Strain Fitness in Pantoea sp. MT58 around IAI47_08340

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,765,111	+		IAI47_08330	0.51	+0.5
1,765,139	+		IAI47_08330	0.53	+0.1
1,765,148	+		IAI47_08330	0.54	+0.1
1,765,148	+		IAI47_08330	0.54	+1.3
1,765,148	+		IAI47_08330	0.54	+0.2
1,765,148	+		IAI47_08330	0.54	+0.6
1,765,148	+		IAI47_08330	0.54	-1.3
1,765,149	-		IAI47_08330	0.54	+0.5
1,765,163	+		IAI47_08330	0.56	+1.1
1,765,163	+		IAI47_08330	0.56	-0.7
1,765,210	+		IAI47_08330	0.60	+0.3
1,765,235	+		IAI47_08330	0.62	+1.4
1,765,235	+		IAI47_08330	0.62	+0.3
1,765,235	+		IAI47_08330	0.62	+0.8
1,765,235	+		IAI47_08330	0.62	-0.2
1,765,254	+		IAI47_08330	0.64	+0.9
1,765,254	+		IAI47_08330	0.64	+1.0
1,765,254	+		IAI47_08330	0.64	-0.6
1,765,255	-		IAI47_08330	0.64	-0.5
1,765,255	-		IAI47_08330	0.64	-0.9
1,765,255	-		IAI47_08330	0.64	+0.1
1,765,257	-		IAI47_08330	0.65	-0.3
1,765,305	+		IAI47_08330	0.69	+0.9
1,765,305	+		IAI47_08330	0.69	+1.8
1,765,305	+		IAI47_08330	0.69	+0.8
1,765,305	+		IAI47_08330	0.69	-0.9
1,765,305	+		IAI47_08330	0.69	+2.1
1,765,305	+		IAI47_08330	0.69	-0.1
1,765,305	+		IAI47_08330	0.69	+0.9
1,765,305	+		IAI47_08330	0.69	+2.8
1,765,305	+		IAI47_08330	0.69	+2.0
1,765,306	-		IAI47_08330	0.69	+0.0
1,765,306	-		IAI47_08330	0.69	-1.2
1,765,306	-		IAI47_08330	0.69	+0.6
1,765,306	-		IAI47_08330	0.69	+0.9
1,765,306	-		IAI47_08330	0.69	-0.8
1,765,306	-		IAI47_08330	0.69	+1.0
1,765,306	-		IAI47_08330	0.69	-0.8
1,765,306	-		IAI47_08330	0.69	+1.8
1,765,306	-		IAI47_08330	0.69	+1.3
1,765,306	-		IAI47_08330	0.69	-0.6
1,765,306	-		IAI47_08330	0.69	+0.3
1,765,510	+		IAI47_08330	0.89	-0.6
1,765,510	+		IAI47_08330	0.89	+1.5
1,765,511	-		IAI47_08330	0.89	-0.3
1,765,511	-		IAI47_08330	0.89	-0.1
1,765,533	-				-2.4
1,765,561	+				+2.2
1,765,567	+				+0.0
1,765,567	+				+0.3
1,765,567	+				-1.1
1,765,567	+				+0.9
1,765,567	+				-0.4
1,765,567	+				+1.2
1,765,568	-				+0.3
1,765,568	-				+0.4
1,765,568	-				-1.9
1,765,622	+				+2.4
1,765,622	+				+2.5
1,765,622	+				+1.3
1,765,622	+				-1.6
1,765,622	+				+0.1
1,765,623	-				+0.6
1,765,623	-				-0.3
1,765,623	-				-0.7
1,765,627	-				-0.6
1,765,663	+				+0.7
1,765,667	+				+0.2
1,765,667	+				-0.3
1,765,667	+				-0.9
1,765,667	+				-1.1
1,765,667	+				-1.2
1,765,667	+				-0.2
1,765,667	+				+1.1
1,765,667	+				-0.7
1,765,668	-				-2.1
1,765,699	+				+1.1
1,765,699	+				+0.0
1,765,712	+		IAI47_08335	0.11	+0.2
1,765,713	-		IAI47_08335	0.12	-0.8
1,765,765	+		IAI47_08335	0.25	-0.8
1,765,765	+		IAI47_08335	0.25	+0.4
1,765,765	+		IAI47_08335	0.25	-0.4
1,765,765	+		IAI47_08335	0.25	+2.2
1,765,766	-		IAI47_08335	0.25	+0.3
1,765,766	-		IAI47_08335	0.25	+0.1
1,765,766	-		IAI47_08335	0.25	+2.1
1,765,766	-		IAI47_08335	0.25	+0.3
1,765,766	-		IAI47_08335	0.25	+0.2
1,765,904	+		IAI47_08335	0.61	+0.8
1,765,904	+		IAI47_08335	0.61	+0.3
1,765,904	+		IAI47_08335	0.61	+1.1
1,765,904	+		IAI47_08335	0.61	+0.6
1,765,905	-		IAI47_08335	0.61	-1.0
1,765,905	-		IAI47_08335	0.61	+0.6
1,765,983	+		IAI47_08335	0.81	+0.8
1,765,984	-		IAI47_08335	0.81	-0.4
1,765,984	-		IAI47_08335	0.81	-0.9
1,765,984	-		IAI47_08335	0.81	-0.2
1,765,987	+		IAI47_08335	0.82	-0.3
1,765,987	+		IAI47_08335	0.82	-0.3
1,765,988	-		IAI47_08335	0.82	-1.0
1,765,988	-		IAI47_08335	0.82	+0.9
1,765,988	-		IAI47_08335	0.82	-0.2
1,765,988	-		IAI47_08335	0.82	+1.9
1,765,988	-		IAI47_08335	0.82	-0.6
1,765,988	-		IAI47_08335	0.82	+2.6
1,766,055	+				+0.6
1,766,055	+				-0.4
1,766,055	+				+1.8
1,766,055	+				-0.0
1,766,055	+				+0.5
1,766,055	+				-1.4
1,766,056	-				+0.9
1,766,056	-				+1.0
1,766,056	-				-0.1
1,766,056	-				+1.1
1,766,056	-				-0.7
1,766,056	-				-0.2
1,766,056	-				+0.6
1,766,056	-				-0.2
1,766,123	+				+0.6
1,766,123	+				+1.1
1,766,123	+				+1.2
1,766,123	+				+0.1
1,766,232	+		IAI47_08340	0.26	+1.3
1,766,232	+		IAI47_08340	0.26	+0.4
1,766,232	+		IAI47_08340	0.26	+0.4
1,766,232	+		IAI47_08340	0.26	+1.2
1,766,232	+		IAI47_08340	0.26	+1.9
1,766,232	+		IAI47_08340	0.26	+0.3
1,766,233	-		IAI47_08340	0.26	+1.6
1,766,233	-		IAI47_08340	0.26	+1.1
1,766,233	-		IAI47_08340	0.26	-0.9
1,766,233	-		IAI47_08340	0.26	+1.9
1,766,233	-		IAI47_08340	0.26	-0.5
1,766,233	-		IAI47_08340	0.26	-0.3
1,766,233	-		IAI47_08340	0.26	+2.8
1,766,516	+		IAI47_08340	0.70	+2.6
1,766,516	+		IAI47_08340	0.70	+1.5
1,766,516	+		IAI47_08340	0.70	+1.0
1,766,516	+		IAI47_08340	0.70	+0.7
1,766,516	+		IAI47_08340	0.70	+1.1
1,766,516	+		IAI47_08340	0.70	+0.6
1,766,516	+		IAI47_08340	0.70	+1.4
1,766,517	-		IAI47_08340	0.70	-0.2
1,766,517	-		IAI47_08340	0.70	+0.7
1,766,517	-		IAI47_08340	0.70	+0.7
1,766,517	-		IAI47_08340	0.70	-0.9
1,766,517	-		IAI47_08340	0.70	-0.5
1,766,698	+				+1.3
1,766,699	-				+1.4
1,766,706	+				+3.2
1,766,706	+				+1.2
1,766,707	-				-1.6
1,766,707	-				-1.1
1,766,744	+				-0.9
1,766,744	+				+0.9
1,766,744	+				+0.4
1,766,744	+				+0.8
1,766,744	+				-0.1
1,766,745	-				-0.2
1,766,745	-				-1.1
1,766,747	+				+1.3
1,766,747	+				+1.1
1,766,747	+				-0.1
1,766,747	+				+0.8
1,766,748	-				-0.1
1,766,748	-				-0.2
1,766,749	+				+1.3
1,766,749	+				-0.7
1,766,752	+				+0.6
1,766,752	+				-0.5
1,766,753	-				-0.2
1,766,753	-				-0.1
1,766,753	-				+0.3
1,766,753	-				-1.6
1,766,753	-				-2.2
1,766,829	+				+0.2
1,766,829	+				-0.8
1,766,829	+				-0.5
1,766,829	+				-2.4
1,766,829	+				+0.5
1,766,829	+				+0.7
1,766,830	-				+1.8
1,766,830	-				+0.7
1,766,845	+				+1.3
1,766,846	-				+1.2
1,766,846	-				+1.7
1,766,846	-				+0.5
1,766,864	+				+0.8
1,766,864	+				+0.8
1,766,864	+				-1.6
1,766,864	+				+1.7
1,766,864	+				+0.4
1,766,864	+				-0.5
1,766,864	+				-0.5
1,766,865	-				+1.6
1,766,865	-				-1.8
1,766,865	-				+0.5
1,766,865	-				+0.8
1,766,865	-				+1.3
1,766,865	-				+3.0
1,766,865	-				+0.2
1,766,865	-				+0.3
1,766,906	-				+1.0
1,767,000	+				+0.7
1,767,000	+				+1.8
1,767,147	+		IAI47_08345	0.22	+1.5
1,767,148	-		IAI47_08345	0.22	-0.1
1,767,218	-		IAI47_08345	0.28	-1.1
1,767,218	-		IAI47_08345	0.28	-1.3
1,767,295	+		IAI47_08345	0.35	+1.2
1,767,296	-		IAI47_08345	0.35	+0.9
1,767,334	+		IAI47_08345	0.38	+0.8
1,767,334	+		IAI47_08345	0.38	+0.8
1,767,335	-		IAI47_08345	0.38	+0.3
1,767,341	-		IAI47_08345	0.39	+0.4
1,767,341	-		IAI47_08345	0.39	+0.6
1,767,353	-		IAI47_08345	0.40	-0.8
1,767,353	-		IAI47_08345	0.40	+0.9
1,767,380	+		IAI47_08345	0.42	+1.5
1,767,380	+		IAI47_08345	0.42	+0.6
1,767,380	+		IAI47_08345	0.42	+0.7
1,767,380	+		IAI47_08345	0.42	+1.5
1,767,381	-		IAI47_08345	0.42	+0.0
1,767,381	-		IAI47_08345	0.42	+0.4
1,767,381	-		IAI47_08345	0.42	-1.9
1,767,513	-		IAI47_08345	0.54	+1.0
1,767,513	-		IAI47_08345	0.54	+0.9
1,767,513	-		IAI47_08345	0.54	+2.0
1,767,533	+		IAI47_08345	0.55	+1.3
1,767,586	+		IAI47_08345	0.60	+1.6
1,767,586	+		IAI47_08345	0.60	+0.1
1,767,586	+		IAI47_08345	0.60	-0.3
1,767,586	+		IAI47_08345	0.60	+0.9
1,767,586	+		IAI47_08345	0.60	-0.0
1,767,586	+		IAI47_08345	0.60	+1.0
1,767,587	-		IAI47_08345	0.60	-0.6
1,767,587	-		IAI47_08345	0.60	-0.5
1,767,587	-		IAI47_08345	0.60	-0.4
1,767,587	-		IAI47_08345	0.60	-0.8
1,767,587	-		IAI47_08345	0.60	+1.3
1,767,587	-		IAI47_08345	0.60	+0.6
1,767,587	-		IAI47_08345	0.60	+1.5
1,767,587	-		IAI47_08345	0.60	+1.8
1,767,587	-		IAI47_08345	0.60	-0.9
1,767,587	-		IAI47_08345	0.60	+0.0
1,767,587	-		IAI47_08345	0.60	-0.5
1,767,587	-		IAI47_08345	0.60	+0.6
1,767,613	+		IAI47_08345	0.62	+0.1
1,767,613	+		IAI47_08345	0.62	+1.9
1,767,613	+		IAI47_08345	0.62	-0.8