Strain Fitness in Pantoea sp. MT58 around IAI47_07485

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_07470 and IAI47_07475 are separated by 24 nucleotidesIAI47_07475 and IAI47_07480 are separated by 139 nucleotidesIAI47_07480 and IAI47_07485 are separated by 114 nucleotidesIAI47_07485 and IAI47_07490 are separated by 107 nucleotides IAI47_07470: IAI47_07470 - AlpA family transcriptional regulator, at 1,578,505 to 1,578,723 _07470 IAI47_07475: IAI47_07475 - hypothetical protein, at 1,578,748 to 1,579,053 _07475 IAI47_07480: IAI47_07480 - hypothetical protein, at 1,579,193 to 1,579,486 _07480 IAI47_07485: IAI47_07485 - DUF4756 family protein, at 1,579,601 to 1,579,987 _07485 IAI47_07490: IAI47_07490 - DNA-binding protein, at 1,580,095 to 1,580,760 _07490 Position (kb) 1579 1580Strain fitness (log2 ratio) -2 -1 0 1 2at 1578.630 kb on - strand, within IAI47_07470at 1578.693 kb on + strand, within IAI47_07470at 1578.721 kb on + strandat 1578.744 kb on + strandat 1578.852 kb on - strand, within IAI47_07475at 1578.957 kb on + strand, within IAI47_07475at 1579.078 kb on - strandat 1579.176 kb on - strandat 1579.197 kb on + strandat 1579.235 kb on - strand, within IAI47_07480at 1579.235 kb on - strand, within IAI47_07480at 1579.296 kb on + strand, within IAI47_07480at 1579.325 kb on - strand, within IAI47_07480at 1579.447 kb on - strand, within IAI47_07480at 1579.460 kb on + strandat 1579.499 kb on + strandat 1579.499 kb on + strandat 1579.500 kb on - strandat 1579.524 kb on - strandat 1579.560 kb on - strandat 1579.603 kb on - strandat 1579.603 kb on - strandat 1579.660 kb on + strand, within IAI47_07485at 1579.660 kb on + strand, within IAI47_07485at 1579.661 kb on - strand, within IAI47_07485at 1579.666 kb on + strand, within IAI47_07485at 1579.737 kb on - strand, within IAI47_07485at 1579.741 kb on + strand, within IAI47_07485at 1579.741 kb on + strand, within IAI47_07485at 1579.742 kb on - strand, within IAI47_07485at 1579.742 kb on - strand, within IAI47_07485at 1579.867 kb on + strand, within IAI47_07485at 1579.868 kb on - strand, within IAI47_07485at 1579.917 kb on + strand, within IAI47_07485at 1579.990 kb on - strandat 1580.074 kb on - strandat 1580.257 kb on - strand, within IAI47_07490at 1580.302 kb on - strand, within IAI47_07490at 1580.341 kb on - strand, within IAI47_07490at 1580.481 kb on + strand, within IAI47_07490at 1580.485 kb on + strand, within IAI47_07490at 1580.660 kb on - strand, within IAI47_07490at 1580.700 kb on + strandat 1580.763 kb on + strandat 1580.812 kb on + strandat 1580.869 kb on - strandat 1580.964 kb on + strandat 1580.980 kb on + strandat 1580.980 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,578,630 - IAI47_07470 0.57 -0.2
1,578,693 + IAI47_07470 0.86 -1.2
1,578,721 + -0.1
1,578,744 + +0.2
1,578,852 - IAI47_07475 0.34 -1.5
1,578,957 + IAI47_07475 0.68 +1.1
1,579,078 - -0.4
1,579,176 - -1.2
1,579,197 + -1.6
1,579,235 - IAI47_07480 0.14 -0.5
1,579,235 - IAI47_07480 0.14 -0.5
1,579,296 + IAI47_07480 0.35 -0.1
1,579,325 - IAI47_07480 0.45 -0.7
1,579,447 - IAI47_07480 0.86 -2.4
1,579,460 + +1.2
1,579,499 + -0.8
1,579,499 + -0.3
1,579,500 - +0.1
1,579,524 - +1.9
1,579,560 - -0.7
1,579,603 - -0.8
1,579,603 - +0.2
1,579,660 + IAI47_07485 0.15 -0.3
1,579,660 + IAI47_07485 0.15 -1.6
1,579,661 - IAI47_07485 0.16 -0.4
1,579,666 + IAI47_07485 0.17 -1.9
1,579,737 - IAI47_07485 0.35 +0.1
1,579,741 + IAI47_07485 0.36 -0.7
1,579,741 + IAI47_07485 0.36 -0.8
1,579,742 - IAI47_07485 0.36 -0.7
1,579,742 - IAI47_07485 0.36 +0.5
1,579,867 + IAI47_07485 0.69 -0.1
1,579,868 - IAI47_07485 0.69 -2.2
1,579,917 + IAI47_07485 0.82 +1.3
1,579,990 - -1.4
1,580,074 - +0.2
1,580,257 - IAI47_07490 0.24 -0.5
1,580,302 - IAI47_07490 0.31 -1.8
1,580,341 - IAI47_07490 0.37 +0.6
1,580,481 + IAI47_07490 0.58 -0.7
1,580,485 + IAI47_07490 0.59 -1.8
1,580,660 - IAI47_07490 0.85 +0.1
1,580,700 + -1.9
1,580,763 + -0.9
1,580,812 + +0.6
1,580,869 - +0.1
1,580,964 + -0.3
1,580,980 + +0.2
1,580,980 + +0.3

Or see this region's nucleotide sequence