Strain Fitness in Pantoea sp. MT58 around IAI47_00160

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00150 and IAI47_00155 are separated by 74 nucleotidesIAI47_00155 and IAI47_00160 are separated by 111 nucleotidesIAI47_00160 and IAI47_00165 overlap by 1 nucleotides IAI47_00150: IAI47_00150 - autotransporter, at 31,384 to 32,070 _00150 IAI47_00155: IAI47_00155 - hypothetical protein, at 32,145 to 32,825 _00155 IAI47_00160: IAI47_00160 - primosomal protein DnaT, at 32,937 to 33,473 _00160 IAI47_00165: IAI47_00165 - DNA replication protein DnaC, at 33,473 to 34,213 _00165 Position (kb) 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 32.023 kb on - strandat 32.041 kb on + strandat 32.041 kb on + strandat 32.042 kb on - strandat 32.042 kb on - strandat 32.043 kb on + strandat 32.044 kb on - strandat 32.044 kb on - strandat 32.068 kb on + strandat 32.068 kb on + strandat 32.069 kb on - strandat 32.069 kb on - strandat 32.078 kb on + strandat 32.078 kb on + strandat 32.104 kb on + strandat 32.109 kb on + strandat 32.145 kb on - strandat 32.145 kb on - strandat 32.165 kb on + strandat 32.165 kb on + strandat 32.165 kb on + strandat 32.166 kb on - strandat 32.166 kb on - strandat 32.166 kb on - strandat 32.166 kb on - strandat 32.166 kb on - strandat 32.219 kb on + strand, within IAI47_00155at 32.220 kb on - strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.233 kb on - strand, within IAI47_00155at 32.233 kb on - strand, within IAI47_00155at 32.233 kb on - strand, within IAI47_00155at 32.233 kb on - strand, within IAI47_00155at 32.279 kb on + strand, within IAI47_00155at 32.279 kb on + strand, within IAI47_00155at 32.331 kb on - strand, within IAI47_00155at 32.331 kb on - strand, within IAI47_00155at 32.374 kb on + strand, within IAI47_00155at 32.374 kb on + strand, within IAI47_00155at 32.375 kb on - strand, within IAI47_00155at 32.375 kb on - strand, within IAI47_00155at 32.375 kb on - strand, within IAI47_00155at 32.388 kb on + strand, within IAI47_00155at 32.388 kb on + strand, within IAI47_00155at 32.389 kb on - strand, within IAI47_00155at 32.389 kb on - strand, within IAI47_00155at 32.389 kb on - strand, within IAI47_00155at 32.429 kb on + strand, within IAI47_00155at 32.578 kb on + strand, within IAI47_00155at 32.578 kb on + strand, within IAI47_00155at 32.579 kb on - strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.647 kb on - strand, within IAI47_00155at 32.647 kb on - strand, within IAI47_00155at 32.697 kb on + strand, within IAI47_00155at 32.698 kb on - strand, within IAI47_00155at 32.698 kb on - strand, within IAI47_00155at 32.727 kb on + strand, within IAI47_00155at 32.728 kb on - strand, within IAI47_00155at 32.728 kb on - strand, within IAI47_00155at 32.860 kb on + strandat 32.861 kb on - strandat 32.869 kb on + strandat 32.869 kb on - strandat 32.870 kb on - strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 34.211 kb on + strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.245 kb on + strandat 34.245 kb on + strandat 34.245 kb on + strandat 34.357 kb on - strandat 34.375 kb on + strandat 34.375 kb on + strandat 34.376 kb on - strandat 34.376 kb on - strandat 34.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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32,023 - +0.3
32,041 + -2.8
32,041 + -1.4
32,042 - -1.0
32,042 - +2.2
32,043 + -2.9
32,044 - -0.1
32,044 - +0.9
32,068 + -0.3
32,068 + -1.6
32,069 - -0.9
32,069 - -1.2
32,078 + -0.3
32,078 + -0.6
32,104 + -0.2
32,109 + +1.1
32,145 - -1.6
32,145 - -0.6
32,165 + -1.7
32,165 + -0.2
32,165 + +0.4
32,166 - -0.1
32,166 - +0.8
32,166 - -1.6
32,166 - +0.2
32,166 - +0.6
32,219 + IAI47_00155 0.11 -0.2
32,220 - IAI47_00155 0.11 -0.1
32,232 + IAI47_00155 0.13 +0.7
32,232 + IAI47_00155 0.13 -0.4
32,232 + IAI47_00155 0.13 +0.2
32,232 + IAI47_00155 0.13 +0.0
32,232 + IAI47_00155 0.13 +0.1
32,232 + IAI47_00155 0.13 -1.5
32,233 - IAI47_00155 0.13 -0.0
32,233 - IAI47_00155 0.13 +2.2
32,233 - IAI47_00155 0.13 -0.1
32,233 - IAI47_00155 0.13 +3.5
32,279 + IAI47_00155 0.20 -1.5
32,279 + IAI47_00155 0.20 -1.8
32,331 - IAI47_00155 0.27 -0.1
32,331 - IAI47_00155 0.27 -2.3
32,374 + IAI47_00155 0.34 +0.1
32,374 + IAI47_00155 0.34 +0.8
32,375 - IAI47_00155 0.34 +0.1
32,375 - IAI47_00155 0.34 -0.3
32,375 - IAI47_00155 0.34 -0.6
32,388 + IAI47_00155 0.36 +0.7
32,388 + IAI47_00155 0.36 -0.9
32,389 - IAI47_00155 0.36 -0.5
32,389 - IAI47_00155 0.36 -0.3
32,389 - IAI47_00155 0.36 -0.9
32,429 + IAI47_00155 0.42 -0.6
32,578 + IAI47_00155 0.64 +1.2
32,578 + IAI47_00155 0.64 +0.3
32,579 - IAI47_00155 0.64 +1.0
32,646 + IAI47_00155 0.74 +0.9
32,646 + IAI47_00155 0.74 -1.1
32,646 + IAI47_00155 0.74 +0.2
32,646 + IAI47_00155 0.74 +1.1
32,646 + IAI47_00155 0.74 -1.9
32,646 + IAI47_00155 0.74 +0.2
32,646 + IAI47_00155 0.74 -1.5
32,646 + IAI47_00155 0.74 +0.2
32,647 - IAI47_00155 0.74 -1.0
32,647 - IAI47_00155 0.74 -0.0
32,697 + IAI47_00155 0.81 -0.5
32,698 - IAI47_00155 0.81 -0.4
32,698 - IAI47_00155 0.81 -0.3
32,727 + IAI47_00155 0.85 +0.5
32,728 - IAI47_00155 0.86 +0.4
32,728 - IAI47_00155 0.86 +1.3
32,860 + -0.3
32,861 - +0.6
32,869 + -1.6
32,869 - -0.2
32,870 - +0.4
32,874 + +3.1
32,874 + +1.7
32,874 + +1.0
32,874 + +0.9
32,874 + -0.7
32,874 + -0.0
32,874 + -0.9
32,874 + -0.7
32,874 + -0.9
34,211 + -1.3
34,212 - -0.8
34,212 - -0.0
34,212 - -1.1
34,212 - +0.4
34,212 - -0.4
34,212 - -2.4
34,245 + -0.3
34,245 + -0.2
34,245 + +0.2
34,357 - -0.1
34,375 + -0.3
34,375 + -0.5
34,376 - -1.5
34,376 - +2.6
34,376 - -0.5

Or see this region's nucleotide sequence