Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06103 and H281DRAFT_06104 overlap by 4 nucleotides H281DRAFT_06104 and H281DRAFT_06105 are separated by 37 nucleotides H281DRAFT_06105 and H281DRAFT_06106 are separated by 19 nucleotides
H281DRAFT_06103: H281DRAFT_06103 - peptide/nickel transport system ATP-binding protein, at 123,290 to 124,180
_06103
H281DRAFT_06104: H281DRAFT_06104 - peptide/nickel transport system ATP-binding protein, at 124,177 to 124,944
_06104
H281DRAFT_06105: H281DRAFT_06105 - transcriptional regulator, GntR family, at 124,982 to 126,085
_06105
H281DRAFT_06106: H281DRAFT_06106 - putative spermidine/putrescine transport system substrate-binding protein, at 126,105 to 127,340
_06106
Position (kb) 124
125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 123.998 kb on + strand, within H281DRAFT_06103 at 124.177 kb on - strand at 124.479 kb on - strand, within H281DRAFT_06104 at 124.483 kb on - strand, within H281DRAFT_06104 at 124.536 kb on - strand, within H281DRAFT_06104 at 124.536 kb on - strand, within H281DRAFT_06104 at 124.829 kb on + strand, within H281DRAFT_06104 at 124.905 kb on + strand at 124.983 kb on + strand at 125.001 kb on + strand at 125.005 kb on + strand at 125.005 kb on + strand at 125.219 kb on - strand, within H281DRAFT_06105 at 125.219 kb on - strand, within H281DRAFT_06105 at 125.302 kb on - strand, within H281DRAFT_06105 at 125.302 kb on - strand, within H281DRAFT_06105 at 125.423 kb on + strand, within H281DRAFT_06105 at 125.440 kb on - strand, within H281DRAFT_06105 at 125.900 kb on - strand, within H281DRAFT_06105 at 126.142 kb on + strand at 126.143 kb on - strand at 126.172 kb on - strand at 126.188 kb on + strand at 126.199 kb on + strand at 126.292 kb on + strand, within H281DRAFT_06106 at 126.293 kb on - strand, within H281DRAFT_06106 at 126.314 kb on + strand, within H281DRAFT_06106 at 126.314 kb on + strand, within H281DRAFT_06106 at 126.314 kb on + strand, within H281DRAFT_06106 at 126.314 kb on + strand, within H281DRAFT_06106 at 126.347 kb on - strand, within H281DRAFT_06106 at 126.447 kb on + strand, within H281DRAFT_06106 at 126.570 kb on - strand, within H281DRAFT_06106 at 126.768 kb on + strand, within H281DRAFT_06106 at 126.768 kb on + strand, within H281DRAFT_06106 at 126.843 kb on + strand, within H281DRAFT_06106 at 126.859 kb on + strand, within H281DRAFT_06106 at 126.860 kb on - strand, within H281DRAFT_06106 at 126.947 kb on - strand, within H281DRAFT_06106
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 123,998 + H281DRAFT_06103 0.79 +0.0 124,177 - -0.6 124,479 - H281DRAFT_06104 0.39 +1.8 124,483 - H281DRAFT_06104 0.40 -0.4 124,536 - H281DRAFT_06104 0.47 +0.3 124,536 - H281DRAFT_06104 0.47 +1.5 124,829 + H281DRAFT_06104 0.85 -0.8 124,905 + -0.5 124,983 + +0.9 125,001 + -1.3 125,005 + -0.0 125,005 + -1.2 125,219 - H281DRAFT_06105 0.21 -0.6 125,219 - H281DRAFT_06105 0.21 -0.5 125,302 - H281DRAFT_06105 0.29 -1.2 125,302 - H281DRAFT_06105 0.29 -1.6 125,423 + H281DRAFT_06105 0.40 -0.8 125,440 - H281DRAFT_06105 0.41 -0.2 125,900 - H281DRAFT_06105 0.83 -0.5 126,142 + +1.0 126,143 - +0.0 126,172 - -1.2 126,188 + -0.8 126,199 + +0.1 126,292 + H281DRAFT_06106 0.15 +0.2 126,293 - H281DRAFT_06106 0.15 +0.6 126,314 + H281DRAFT_06106 0.17 -1.5 126,314 + H281DRAFT_06106 0.17 +0.3 126,314 + H281DRAFT_06106 0.17 -2.1 126,314 + H281DRAFT_06106 0.17 -1.1 126,347 - H281DRAFT_06106 0.20 +0.2 126,447 + H281DRAFT_06106 0.28 -0.8 126,570 - H281DRAFT_06106 0.38 +0.7 126,768 + H281DRAFT_06106 0.54 -0.6 126,768 + H281DRAFT_06106 0.54 +0.3 126,843 + H281DRAFT_06106 0.60 -0.2 126,859 + H281DRAFT_06106 0.61 +0.1 126,860 - H281DRAFT_06106 0.61 +0.2 126,947 - H281DRAFT_06106 0.68 -0.8
Or see this region's nucleotide sequence