Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05703

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05701 and H281DRAFT_05702 are separated by 95 nucleotidesH281DRAFT_05702 and H281DRAFT_05703 overlap by 4 nucleotidesH281DRAFT_05703 and H281DRAFT_05704 are separated by 158 nucleotides H281DRAFT_05701: H281DRAFT_05701 - glycerol 3-phosphate ABC transporter ATP-binding protein, at 118,364 to 119,452 _05701 H281DRAFT_05702: H281DRAFT_05702 - glycerol 3-phosphate ABC transporter membrane protein, at 119,548 to 120,393 _05702 H281DRAFT_05703: H281DRAFT_05703 - glycerol 3-phosphate ABC transporter membrane protein /carbohydrate ABC transporter membrane protein 1, CUT1 family, at 120,390 to 121,274 _05703 H281DRAFT_05704: H281DRAFT_05704 - glycerol 3-phosphate-binding protein, at 121,433 to 122,767 _05704 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1at 119.751 kb on - strand, within H281DRAFT_05702at 119.960 kb on + strand, within H281DRAFT_05702at 119.960 kb on + strandat 119.960 kb on + strand, within H281DRAFT_05702at 119.960 kb on + strand, within H281DRAFT_05702at 119.961 kb on - strand, within H281DRAFT_05702at 119.961 kb on - strand, within H281DRAFT_05702at 119.964 kb on + strand, within H281DRAFT_05702at 119.964 kb on + strand, within H281DRAFT_05702at 119.964 kb on + strand, within H281DRAFT_05702at 119.964 kb on + strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 120.220 kb on - strand, within H281DRAFT_05702at 120.344 kb on - strandat 120.526 kb on + strand, within H281DRAFT_05703at 120.526 kb on + strand, within H281DRAFT_05703at 120.604 kb on + strand, within H281DRAFT_05703at 120.604 kb on + strand, within H281DRAFT_05703at 120.604 kb on + strand, within H281DRAFT_05703at 120.745 kb on + strand, within H281DRAFT_05703at 120.745 kb on + strand, within H281DRAFT_05703at 120.746 kb on - strand, within H281DRAFT_05703at 120.764 kb on - strand, within H281DRAFT_05703at 120.764 kb on - strand, within H281DRAFT_05703at 120.764 kb on - strandat 120.848 kb on - strand, within H281DRAFT_05703at 120.934 kb on + strand, within H281DRAFT_05703at 120.934 kb on + strand, within H281DRAFT_05703at 120.935 kb on - strand, within H281DRAFT_05703at 121.075 kb on + strand, within H281DRAFT_05703at 121.234 kb on + strandat 121.235 kb on - strandat 121.343 kb on + strandat 121.344 kb on - strandat 121.351 kb on + strandat 121.426 kb on - strandat 121.434 kb on + strandat 121.434 kb on + strandat 121.435 kb on - strandat 121.584 kb on - strand, within H281DRAFT_05704at 121.584 kb on - strand, within H281DRAFT_05704at 121.584 kb on - strand, within H281DRAFT_05704at 121.660 kb on - strand, within H281DRAFT_05704at 121.686 kb on + strand, within H281DRAFT_05704at 121.686 kb on + strand, within H281DRAFT_05704at 121.711 kb on - strand, within H281DRAFT_05704at 121.711 kb on - strand, within H281DRAFT_05704at 121.758 kb on + strand, within H281DRAFT_05704at 121.759 kb on - strand, within H281DRAFT_05704at 121.785 kb on + strand, within H281DRAFT_05704at 121.786 kb on - strand, within H281DRAFT_05704at 121.909 kb on - strand, within H281DRAFT_05704at 121.968 kb on + strand, within H281DRAFT_05704at 122.004 kb on + strand, within H281DRAFT_05704at 122.004 kb on + strand, within H281DRAFT_05704at 122.004 kb on + strand, within H281DRAFT_05704at 122.005 kb on - strand, within H281DRAFT_05704at 122.005 kb on - strand, within H281DRAFT_05704at 122.145 kb on + strand, within H281DRAFT_05704

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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119,751 - H281DRAFT_05702 0.24 +0.6
119,960 + H281DRAFT_05702 0.49 -0.4
119,960 + +0.5
119,960 + H281DRAFT_05702 0.49 +0.9
119,960 + H281DRAFT_05702 0.49 +0.9
119,961 - H281DRAFT_05702 0.49 -0.0
119,961 - H281DRAFT_05702 0.49 -0.9
119,964 + H281DRAFT_05702 0.49 -1.6
119,964 + H281DRAFT_05702 0.49 +0.9
119,964 + H281DRAFT_05702 0.49 -0.9
119,964 + H281DRAFT_05702 0.49 -0.5
119,965 - H281DRAFT_05702 0.49 -0.1
119,965 - H281DRAFT_05702 0.49 +0.0
119,965 - H281DRAFT_05702 0.49 -0.3
119,965 - H281DRAFT_05702 0.49 +1.7
119,965 - H281DRAFT_05702 0.49 -0.1
120,220 - H281DRAFT_05702 0.79 +0.0
120,344 - +0.0
120,526 + H281DRAFT_05703 0.15 +0.8
120,526 + H281DRAFT_05703 0.15 +0.9
120,604 + H281DRAFT_05703 0.24 -0.5
120,604 + H281DRAFT_05703 0.24 -0.5
120,604 + H281DRAFT_05703 0.24 -2.6
120,745 + H281DRAFT_05703 0.40 +0.4
120,745 + H281DRAFT_05703 0.40 -0.5
120,746 - H281DRAFT_05703 0.40 -0.0
120,764 - H281DRAFT_05703 0.42 -0.8
120,764 - H281DRAFT_05703 0.42 -0.7
120,764 - +1.5
120,848 - H281DRAFT_05703 0.52 +0.3
120,934 + H281DRAFT_05703 0.61 +0.5
120,934 + H281DRAFT_05703 0.61 -1.7
120,935 - H281DRAFT_05703 0.62 -0.9
121,075 + H281DRAFT_05703 0.77 -0.4
121,234 + +0.8
121,235 - +0.8
121,343 + -0.1
121,344 - -0.4
121,351 + +0.7
121,426 - +0.1
121,434 + +0.1
121,434 + +0.1
121,435 - +0.3
121,584 - H281DRAFT_05704 0.11 +0.6
121,584 - H281DRAFT_05704 0.11 -0.9
121,584 - H281DRAFT_05704 0.11 -0.5
121,660 - H281DRAFT_05704 0.17 -1.9
121,686 + H281DRAFT_05704 0.19 -2.8
121,686 + H281DRAFT_05704 0.19 -0.3
121,711 - H281DRAFT_05704 0.21 -1.8
121,711 - H281DRAFT_05704 0.21 -1.5
121,758 + H281DRAFT_05704 0.24 +1.1
121,759 - H281DRAFT_05704 0.24 +0.9
121,785 + H281DRAFT_05704 0.26 +1.1
121,786 - H281DRAFT_05704 0.26 +0.7
121,909 - H281DRAFT_05704 0.36 -0.5
121,968 + H281DRAFT_05704 0.40 -0.1
122,004 + H281DRAFT_05704 0.43 +0.6
122,004 + H281DRAFT_05704 0.43 -0.1
122,004 + H281DRAFT_05704 0.43 +0.9
122,005 - H281DRAFT_05704 0.43 +1.4
122,005 - H281DRAFT_05704 0.43 +0.5
122,145 + H281DRAFT_05704 0.53 +0.3

Or see this region's nucleotide sequence