Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05472 and H281DRAFT_05473 are separated by 24 nucleotides H281DRAFT_05473 and H281DRAFT_05474 overlap by 4 nucleotides H281DRAFT_05474 and H281DRAFT_05475 overlap by 11 nucleotides
H281DRAFT_05472: H281DRAFT_05472 - L-alanine-DL-glutamate epimerase, at 53,151 to 54,257
_05472
H281DRAFT_05473: H281DRAFT_05473 - hypothetical protein, at 54,282 to 55,199
_05473
H281DRAFT_05474: H281DRAFT_05474 - Gluconate 2-dehydrogenase subunit 3, at 55,196 to 55,843
_05474
H281DRAFT_05475: H281DRAFT_05475 - Choline dehydrogenase, at 55,833 to 57,488
_05475
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 53.313 kb on + strand, within H281DRAFT_05472 at 53.314 kb on - strand, within H281DRAFT_05472 at 53.314 kb on - strand, within H281DRAFT_05472 at 54.030 kb on + strand, within H281DRAFT_05472 at 54.130 kb on + strand, within H281DRAFT_05472 at 54.130 kb on + strand, within H281DRAFT_05472 at 54.130 kb on + strand, within H281DRAFT_05472 at 54.504 kb on + strand, within H281DRAFT_05473 at 54.505 kb on - strand, within H281DRAFT_05473 at 54.505 kb on - strand, within H281DRAFT_05473 at 54.648 kb on + strand, within H281DRAFT_05473 at 54.649 kb on - strand, within H281DRAFT_05473 at 54.649 kb on - strand, within H281DRAFT_05473 at 54.649 kb on - strand, within H281DRAFT_05473 at 54.649 kb on - strand, within H281DRAFT_05473 at 54.912 kb on + strand, within H281DRAFT_05473 at 54.913 kb on - strand, within H281DRAFT_05473 at 55.679 kb on + strand, within H281DRAFT_05474 at 55.680 kb on - strand, within H281DRAFT_05474 at 55.680 kb on - strand, within H281DRAFT_05474 at 55.683 kb on - strand, within H281DRAFT_05474 at 55.683 kb on - strand, within H281DRAFT_05474 at 55.683 kb on - strand, within H281DRAFT_05474 at 55.683 kb on - strand, within H281DRAFT_05474 at 55.817 kb on + strand at 55.817 kb on + strand at 55.817 kb on + strand at 55.817 kb on + strand at 55.818 kb on - strand at 55.818 kb on - strand at 55.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 53,313 + H281DRAFT_05472 0.15 -0.7 53,314 - H281DRAFT_05472 0.15 -1.6 53,314 - H281DRAFT_05472 0.15 +0.4 54,030 + H281DRAFT_05472 0.79 +0.5 54,130 + H281DRAFT_05472 0.88 -2.5 54,130 + H281DRAFT_05472 0.88 +1.4 54,130 + H281DRAFT_05472 0.88 +1.5 54,504 + H281DRAFT_05473 0.24 +0.9 54,505 - H281DRAFT_05473 0.24 +0.0 54,505 - H281DRAFT_05473 0.24 -0.1 54,648 + H281DRAFT_05473 0.40 +0.3 54,649 - H281DRAFT_05473 0.40 +0.5 54,649 - H281DRAFT_05473 0.40 -2.4 54,649 - H281DRAFT_05473 0.40 +0.9 54,649 - H281DRAFT_05473 0.40 +0.9 54,912 + H281DRAFT_05473 0.69 -0.5 54,913 - H281DRAFT_05473 0.69 -0.5 55,679 + H281DRAFT_05474 0.75 -0.2 55,680 - H281DRAFT_05474 0.75 +0.1 55,680 - H281DRAFT_05474 0.75 -0.6 55,683 - H281DRAFT_05474 0.75 +2.6 55,683 - H281DRAFT_05474 0.75 -3.4 55,683 - H281DRAFT_05474 0.75 +1.1 55,683 - H281DRAFT_05474 0.75 +0.8 55,817 + -0.9 55,817 + +0.4 55,817 + +0.2 55,817 + -0.6 55,818 - -1.4 55,818 - -0.8 55,818 - +1.3
Or see this region's nucleotide sequence