Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05086

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05085 and H281DRAFT_05086 overlap by 4 nucleotidesH281DRAFT_05086 and H281DRAFT_05087 overlap by 4 nucleotides H281DRAFT_05085: H281DRAFT_05085 - DNA helicase/exodeoxyribonuclease V, gamma subunit, at 23,607 to 26,984 _05085 H281DRAFT_05086: H281DRAFT_05086 - DNA helicase/exodeoxyribonuclease V, beta subunit, at 26,981 to 30,682 _05086 H281DRAFT_05087: H281DRAFT_05087 - exodeoxyribonuclease V alpha subunit, at 30,679 to 33,003 _05087 Position (kb) 26 27 28 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1at 26.245 kb on + strand, within H281DRAFT_05085at 26.586 kb on - strand, within H281DRAFT_05085at 27.030 kb on + strandat 27.056 kb on - strandat 27.111 kb on - strandat 28.295 kb on - strand, within H281DRAFT_05086at 28.299 kb on - strand, within H281DRAFT_05086at 28.332 kb on - strandat 29.245 kb on + strandat 29.354 kb on + strand, within H281DRAFT_05086at 29.519 kb on + strand, within H281DRAFT_05086at 30.476 kb on + strandat 31.261 kb on - strand, within H281DRAFT_05087at 31.423 kb on - strand, within H281DRAFT_05087at 31.647 kb on + strand, within H281DRAFT_05087

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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26,245 + H281DRAFT_05085 0.78 -0.7
26,586 - H281DRAFT_05085 0.88 +0.6
27,030 + -0.1
27,056 - -1.2
27,111 - -1.7
28,295 - H281DRAFT_05086 0.35 -2.0
28,299 - H281DRAFT_05086 0.36 -2.7
28,332 - +1.2
29,245 + -1.2
29,354 + H281DRAFT_05086 0.64 -0.3
29,519 + H281DRAFT_05086 0.69 -3.1
30,476 + -1.4
31,261 - H281DRAFT_05087 0.25 -3.4
31,423 - H281DRAFT_05087 0.32 -3.3
31,647 + H281DRAFT_05087 0.42 -0.1

Or see this region's nucleotide sequence