Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04715

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04714 and H281DRAFT_04715 are separated by 176 nucleotidesH281DRAFT_04715 and H281DRAFT_04716 are separated by 272 nucleotidesH281DRAFT_04716 and H281DRAFT_04717 are separated by 201 nucleotides H281DRAFT_04714: H281DRAFT_04714 - small conductance mechanosensitive channel, at 128,277 to 129,089 _04714 H281DRAFT_04715: H281DRAFT_04715 - hypothetical protein, at 129,266 to 129,730 _04715 H281DRAFT_04716: H281DRAFT_04716 - tRNA_Lys_TTT, at 130,003 to 130,078 _04716 H281DRAFT_04717: H281DRAFT_04717 - tol-pal system protein YbgF, at 130,280 to 131,029 _04717 Position (kb) 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 128.358 kb on - strandat 128.368 kb on + strand, within H281DRAFT_04714at 128.368 kb on + strand, within H281DRAFT_04714at 128.482 kb on - strand, within H281DRAFT_04714at 128.640 kb on - strand, within H281DRAFT_04714at 128.649 kb on - strand, within H281DRAFT_04714at 129.126 kb on - strandat 129.200 kb on + strandat 129.201 kb on - strandat 129.202 kb on + strandat 129.202 kb on + strandat 129.202 kb on + strandat 129.203 kb on - strandat 129.268 kb on - strandat 129.396 kb on + strand, within H281DRAFT_04715at 129.397 kb on - strand, within H281DRAFT_04715at 129.565 kb on + strand, within H281DRAFT_04715at 129.640 kb on + strand, within H281DRAFT_04715at 129.741 kb on + strandat 129.741 kb on + strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.742 kb on - strandat 129.912 kb on + strandat 129.913 kb on - strandat 129.913 kb on - strandat 129.913 kb on - strandat 129.921 kb on - strandat 129.970 kb on - strandat 130.144 kb on + strandat 130.144 kb on + strandat 130.144 kb on + strandat 130.145 kb on - strandat 130.145 kb on - strandat 130.145 kb on - strandat 130.281 kb on + strandat 130.282 kb on - strandat 130.282 kb on - strandat 130.489 kb on - strand, within H281DRAFT_04717at 130.503 kb on + strand, within H281DRAFT_04717at 130.524 kb on + strand, within H281DRAFT_04717at 130.558 kb on - strand, within H281DRAFT_04717

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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128,358 - +0.6
128,368 + H281DRAFT_04714 0.11 -0.3
128,368 + H281DRAFT_04714 0.11 +0.6
128,482 - H281DRAFT_04714 0.25 +0.8
128,640 - H281DRAFT_04714 0.45 -3.0
128,649 - H281DRAFT_04714 0.46 -1.1
129,126 - +0.1
129,200 + -1.0
129,201 - +0.0
129,202 + +1.9
129,202 + +0.4
129,202 + +0.4
129,203 - -1.9
129,268 - -0.1
129,396 + H281DRAFT_04715 0.28 +0.2
129,397 - H281DRAFT_04715 0.28 +0.5
129,565 + H281DRAFT_04715 0.64 +0.2
129,640 + H281DRAFT_04715 0.80 -2.6
129,741 + -0.6
129,741 + +0.3
129,742 - -0.9
129,742 - +2.2
129,742 - -0.6
129,742 - +0.5
129,742 - +0.8
129,742 - +2.3
129,742 - +1.0
129,912 + +0.4
129,913 - -1.1
129,913 - +0.1
129,913 - -1.6
129,921 - -1.2
129,970 - +0.5
130,144 + -1.1
130,144 + -1.4
130,144 + -0.1
130,145 - +0.3
130,145 - -0.7
130,145 - -0.8
130,281 + -1.2
130,282 - -0.2
130,282 - +0.4
130,489 - H281DRAFT_04717 0.28 -2.7
130,503 + H281DRAFT_04717 0.30 +0.8
130,524 + H281DRAFT_04717 0.33 -1.0
130,558 - H281DRAFT_04717 0.37 -2.0

Or see this region's nucleotide sequence