Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04705

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04703 and H281DRAFT_04704 are separated by 29 nucleotidesH281DRAFT_04704 and H281DRAFT_04705 overlap by 4 nucleotidesH281DRAFT_04705 and H281DRAFT_04706 are separated by 48 nucleotides H281DRAFT_04703: H281DRAFT_04703 - ketopantoate hydroxymethyltransferase, at 116,635 to 117,450 _04703 H281DRAFT_04704: H281DRAFT_04704 - Deoxyadenosine/deoxycytidine kinase, at 117,480 to 118,160 _04704 H281DRAFT_04705: H281DRAFT_04705 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 118,157 to 118,690 _04705 H281DRAFT_04706: H281DRAFT_04706 - poly(A) polymerase, at 118,739 to 120,337 _04706 Position (kb) 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1at 117.444 kb on - strandat 117.626 kb on - strand, within H281DRAFT_04704at 117.640 kb on + strandat 117.641 kb on - strand, within H281DRAFT_04704at 117.664 kb on + strand, within H281DRAFT_04704at 117.665 kb on - strand, within H281DRAFT_04704at 117.965 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.696 kb on - strandat 118.696 kb on - strandat 118.696 kb on - strandat 118.696 kb on - strandat 118.710 kb on - strandat 118.889 kb on - strandat 119.006 kb on - strand, within H281DRAFT_04706at 119.179 kb on - strand, within H281DRAFT_04706at 119.624 kb on + strand, within H281DRAFT_04706at 119.625 kb on - strand, within H281DRAFT_04706at 119.625 kb on - strand, within H281DRAFT_04706at 119.647 kb on - strand, within H281DRAFT_04706at 119.676 kb on + strand, within H281DRAFT_04706at 119.676 kb on + strand, within H281DRAFT_04706at 119.676 kb on + strand, within H281DRAFT_04706at 119.677 kb on - strand, within H281DRAFT_04706at 119.677 kb on - strand, within H281DRAFT_04706at 119.679 kb on + strand, within H281DRAFT_04706at 119.680 kb on - strand, within H281DRAFT_04706at 119.680 kb on - strand, within H281DRAFT_04706

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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117,444 - -1.1
117,626 - H281DRAFT_04704 0.21 -0.0
117,640 + -1.0
117,641 - H281DRAFT_04704 0.24 +1.1
117,664 + H281DRAFT_04704 0.27 -3.6
117,665 - H281DRAFT_04704 0.27 -2.6
117,965 - H281DRAFT_04704 0.71 -1.2
118,086 - H281DRAFT_04704 0.89 -1.9
118,086 - H281DRAFT_04704 0.89 -0.7
118,086 - H281DRAFT_04704 0.89 +0.9
118,696 - -2.9
118,696 - -1.7
118,696 - -0.4
118,696 - -0.1
118,710 - +0.0
118,889 - +0.6
119,006 - H281DRAFT_04706 0.17 -1.3
119,179 - H281DRAFT_04706 0.28 -1.8
119,624 + H281DRAFT_04706 0.55 -2.3
119,625 - H281DRAFT_04706 0.55 -3.1
119,625 - H281DRAFT_04706 0.55 -1.1
119,647 - H281DRAFT_04706 0.57 -2.1
119,676 + H281DRAFT_04706 0.59 -0.7
119,676 + H281DRAFT_04706 0.59 -0.2
119,676 + H281DRAFT_04706 0.59 +1.7
119,677 - H281DRAFT_04706 0.59 -1.3
119,677 - H281DRAFT_04706 0.59 -0.8
119,679 + H281DRAFT_04706 0.59 -0.5
119,680 - H281DRAFT_04706 0.59 -2.4
119,680 - H281DRAFT_04706 0.59 +0.4

Or see this region's nucleotide sequence