Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04096

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04094 and H281DRAFT_04095 are separated by 246 nucleotidesH281DRAFT_04095 and H281DRAFT_04096 are separated by 133 nucleotidesH281DRAFT_04096 and H281DRAFT_04097 are separated by 207 nucleotidesH281DRAFT_04097 and H281DRAFT_04098 are separated by 42 nucleotides H281DRAFT_04094: H281DRAFT_04094 - peptide/nickel transport system ATP-binding protein, at 200,909 to 203,143 _04094 H281DRAFT_04095: H281DRAFT_04095 - hypothetical protein, at 203,390 to 203,872 _04095 H281DRAFT_04096: H281DRAFT_04096 - Aldo/keto reductase, at 204,006 to 204,851 _04096 H281DRAFT_04097: H281DRAFT_04097 - transcriptional regulator, GntR family, at 205,059 to 205,805 _04097 H281DRAFT_04098: H281DRAFT_04098 - Predicted acyl-CoA transferases/carnitine dehydratase, at 205,848 to 207,266 _04098 Position (kb) 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 203.035 kb on - strandat 203.147 kb on + strandat 203.148 kb on - strandat 203.148 kb on - strandat 203.322 kb on - strandat 203.322 kb on - strandat 203.322 kb on - strandat 203.355 kb on - strandat 203.364 kb on + strandat 203.365 kb on - strandat 203.374 kb on - strandat 203.926 kb on + strandat 203.926 kb on + strandat 203.983 kb on + strandat 203.983 kb on + strandat 204.050 kb on - strandat 204.268 kb on + strand, within H281DRAFT_04096at 204.269 kb on - strand, within H281DRAFT_04096at 204.344 kb on - strand, within H281DRAFT_04096at 204.518 kb on - strand, within H281DRAFT_04096at 204.518 kb on - strand, within H281DRAFT_04096at 204.601 kb on + strand, within H281DRAFT_04096at 204.682 kb on + strand, within H281DRAFT_04096at 204.696 kb on - strand, within H281DRAFT_04096at 204.945 kb on + strandat 205.004 kb on + strandat 205.046 kb on + strandat 205.051 kb on + strandat 205.052 kb on - strandat 205.247 kb on + strand, within H281DRAFT_04097at 205.247 kb on + strand, within H281DRAFT_04097at 205.248 kb on - strand, within H281DRAFT_04097at 205.324 kb on - strand, within H281DRAFT_04097at 205.382 kb on + strand, within H281DRAFT_04097at 205.439 kb on - strand, within H281DRAFT_04097at 205.547 kb on - strand, within H281DRAFT_04097at 205.547 kb on - strand, within H281DRAFT_04097at 205.581 kb on + strand, within H281DRAFT_04097at 205.581 kb on + strand, within H281DRAFT_04097at 205.588 kb on - strand, within H281DRAFT_04097at 205.588 kb on - strand, within H281DRAFT_04097at 205.588 kb on - strand, within H281DRAFT_04097at 205.721 kb on + strand, within H281DRAFT_04097at 205.722 kb on - strand, within H281DRAFT_04097at 205.758 kb on + strandat 205.758 kb on + strandat 205.758 kb on + strandat 205.776 kb on + strandat 205.776 kb on + strandat 205.776 kb on + strandat 205.777 kb on - strandat 205.804 kb on - strandat 205.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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203,035 - +0.3
203,147 + -0.8
203,148 - -0.4
203,148 - +0.8
203,322 - +0.4
203,322 - +0.3
203,322 - -2.1
203,355 - -2.6
203,364 + -0.7
203,365 - +1.1
203,374 - +0.8
203,926 + -1.1
203,926 + +1.7
203,983 + +0.8
203,983 + -0.4
204,050 - -1.2
204,268 + H281DRAFT_04096 0.31 -0.8
204,269 - H281DRAFT_04096 0.31 +0.9
204,344 - H281DRAFT_04096 0.40 -0.3
204,518 - H281DRAFT_04096 0.61 +1.3
204,518 - H281DRAFT_04096 0.61 -2.8
204,601 + H281DRAFT_04096 0.70 -1.1
204,682 + H281DRAFT_04096 0.80 -0.4
204,696 - H281DRAFT_04096 0.82 -0.8
204,945 + -1.5
205,004 + -0.1
205,046 + -1.1
205,051 + +0.3
205,052 - -0.5
205,247 + H281DRAFT_04097 0.25 -2.7
205,247 + H281DRAFT_04097 0.25 +0.3
205,248 - H281DRAFT_04097 0.25 +1.4
205,324 - H281DRAFT_04097 0.35 +0.1
205,382 + H281DRAFT_04097 0.43 +1.9
205,439 - H281DRAFT_04097 0.51 +0.3
205,547 - H281DRAFT_04097 0.65 -0.2
205,547 - H281DRAFT_04097 0.65 -0.7
205,581 + H281DRAFT_04097 0.70 -0.5
205,581 + H281DRAFT_04097 0.70 +0.3
205,588 - H281DRAFT_04097 0.71 -1.5
205,588 - H281DRAFT_04097 0.71 +0.8
205,588 - H281DRAFT_04097 0.71 -0.0
205,721 + H281DRAFT_04097 0.89 +1.5
205,722 - H281DRAFT_04097 0.89 -1.2
205,758 + +0.0
205,758 + -0.5
205,758 + +0.0
205,776 + -0.5
205,776 + -0.7
205,776 + +0.1
205,777 - +0.5
205,804 - +0.2
205,829 - -0.2

Or see this region's nucleotide sequence