Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03972 and H281DRAFT_03973 overlap by 4 nucleotides H281DRAFT_03973 and H281DRAFT_03974 are separated by 6 nucleotides H281DRAFT_03974 and H281DRAFT_03975 overlap by 4 nucleotides
H281DRAFT_03972: H281DRAFT_03972 - 3-oxoacyl-[acyl-carrier protein] reductase, at 78,094 to 78,819
_03972
H281DRAFT_03973: H281DRAFT_03973 - Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain, at 78,816 to 79,301
_03973
H281DRAFT_03974: H281DRAFT_03974 - 3-oxoacyl-[acyl-carrier-protein] synthase-1, at 79,308 to 80,492
_03974
H281DRAFT_03975: H281DRAFT_03975 - Predicted exporter, at 80,489 to 82,978
_03975
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1 at 78.362 kb on + strand, within H281DRAFT_03972 at 78.362 kb on + strand, within H281DRAFT_03972 at 78.473 kb on + strand, within H281DRAFT_03972 at 78.473 kb on + strand, within H281DRAFT_03972 at 78.578 kb on + strand, within H281DRAFT_03972 at 78.762 kb on - strand at 79.260 kb on - strand at 79.370 kb on - strand at 79.745 kb on + strand, within H281DRAFT_03974 at 80.716 kb on - strand at 80.743 kb on + strand, within H281DRAFT_03975 at 80.743 kb on + strand, within H281DRAFT_03975 at 80.822 kb on + strand, within H281DRAFT_03975 at 81.112 kb on - strand, within H281DRAFT_03975
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 78,362 + H281DRAFT_03972 0.37 -0.5 78,362 + H281DRAFT_03972 0.37 +1.3 78,473 + H281DRAFT_03972 0.52 +1.0 78,473 + H281DRAFT_03972 0.52 +1.3 78,578 + H281DRAFT_03972 0.67 +0.7 78,762 - +0.1 79,260 - -0.5 79,370 - +1.1 79,745 + H281DRAFT_03974 0.37 -0.7 80,716 - -2.2 80,743 + H281DRAFT_03975 0.10 +0.0 80,743 + H281DRAFT_03975 0.10 +0.5 80,822 + H281DRAFT_03975 0.13 -0.8 81,112 - H281DRAFT_03975 0.25 -1.0
Or see this region's nucleotide sequence