Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03638

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03636 and H281DRAFT_03637 overlap by 8 nucleotidesH281DRAFT_03637 and H281DRAFT_03638 are separated by 26 nucleotidesH281DRAFT_03638 and H281DRAFT_03639 are separated by 32 nucleotidesH281DRAFT_03639 and H281DRAFT_03640 are separated by 0 nucleotides H281DRAFT_03636: H281DRAFT_03636 - Phenylpropionate dioxygenase, large terminal subunit, at 144,880 to 145,983 _03636 H281DRAFT_03637: H281DRAFT_03637 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 145,976 to 146,743 _03637 H281DRAFT_03638: H281DRAFT_03638 - Cupin domain-containing protein, at 146,770 to 147,297 _03638 H281DRAFT_03639: H281DRAFT_03639 - Pimeloyl-ACP methyl ester carboxylesterase, at 147,330 to 148,223 _03639 H281DRAFT_03640: H281DRAFT_03640 - transcriptional regulator, IclR family, at 148,224 to 149,108 _03640 Position (kb) 146 147 148Strain fitness (log2 ratio) -2 -1 0 1 2 3at 145.780 kb on + strand, within H281DRAFT_03636at 145.781 kb on - strand, within H281DRAFT_03636at 145.828 kb on + strand, within H281DRAFT_03636at 145.981 kb on + strandat 146.165 kb on + strand, within H281DRAFT_03637at 146.371 kb on - strand, within H281DRAFT_03637at 146.580 kb on - strand, within H281DRAFT_03637at 146.603 kb on + strand, within H281DRAFT_03637at 146.939 kb on - strand, within H281DRAFT_03638

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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145,780 + H281DRAFT_03636 0.82 -2.0
145,781 - H281DRAFT_03636 0.82 -0.1
145,828 + H281DRAFT_03636 0.86 +3.2
145,981 + -1.1
146,165 + H281DRAFT_03637 0.25 +0.2
146,371 - H281DRAFT_03637 0.51 +1.8
146,580 - H281DRAFT_03637 0.79 +0.7
146,603 + H281DRAFT_03637 0.82 -0.9
146,939 - H281DRAFT_03638 0.32 +0.0

Or see this region's nucleotide sequence