Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03525

Experiment: Hexanoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03523 and H281DRAFT_03524 are separated by 111 nucleotidesH281DRAFT_03524 and H281DRAFT_03525 are separated by 218 nucleotidesH281DRAFT_03525 and H281DRAFT_03526 are separated by 111 nucleotides H281DRAFT_03523: H281DRAFT_03523 - mannose-6-phosphate isomerase, at 22,288 to 23,397 _03523 H281DRAFT_03524: H281DRAFT_03524 - hypothetical protein, at 23,509 to 23,784 _03524 H281DRAFT_03525: H281DRAFT_03525 - cold-shock DNA-binding protein family, at 24,003 to 24,206 _03525 H281DRAFT_03526: H281DRAFT_03526 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 24,318 to 25,940 _03526 Position (kb) 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 23.042 kb on + strand, within H281DRAFT_03523at 23.043 kb on - strand, within H281DRAFT_03523at 23.328 kb on - strandat 23.359 kb on + strandat 23.359 kb on + strandat 23.360 kb on - strandat 23.413 kb on + strandat 23.413 kb on + strandat 23.413 kb on + strandat 23.413 kb on + strandat 23.413 kb on + strandat 23.413 kb on + strandat 23.413 kb on + strandat 23.414 kb on - strandat 23.513 kb on + strandat 23.514 kb on - strandat 23.514 kb on - strandat 23.514 kb on - strandat 23.514 kb on - strandat 23.514 kb on - strandat 23.565 kb on + strand, within H281DRAFT_03524at 23.565 kb on + strand, within H281DRAFT_03524at 23.566 kb on - strand, within H281DRAFT_03524at 23.567 kb on + strand, within H281DRAFT_03524at 23.568 kb on - strand, within H281DRAFT_03524at 23.568 kb on - strand, within H281DRAFT_03524at 23.568 kb on - strand, within H281DRAFT_03524at 23.587 kb on - strand, within H281DRAFT_03524at 23.758 kb on - strandat 23.774 kb on + strandat 23.774 kb on + strandat 23.774 kb on + strandat 23.805 kb on + strandat 23.805 kb on + strandat 23.805 kb on + strandat 23.805 kb on + strandat 23.805 kb on + strandat 23.805 kb on + strandat 23.805 kb on + strandat 23.805 kb on + strandat 23.881 kb on + strandat 23.889 kb on + strandat 23.889 kb on + strandat 23.912 kb on + strandat 23.912 kb on + strandat 23.923 kb on + strandat 23.923 kb on + strandat 23.923 kb on + strandat 23.924 kb on - strandat 23.924 kb on - strandat 23.924 kb on - strandat 23.924 kb on - strandat 23.961 kb on + strandat 23.961 kb on + strandat 23.979 kb on + strandat 23.979 kb on + strandat 23.979 kb on + strandat 23.980 kb on - strandat 23.980 kb on - strandat 23.980 kb on - strandat 23.991 kb on - strandat 24.015 kb on - strandat 24.016 kb on - strandat 24.029 kb on + strand, within H281DRAFT_03525at 24.119 kb on + strand, within H281DRAFT_03525at 24.120 kb on - strand, within H281DRAFT_03525at 24.204 kb on + strandat 24.204 kb on + strandat 24.204 kb on + strandat 24.208 kb on + strandat 24.208 kb on + strandat 24.209 kb on - strandat 24.209 kb on - strandat 24.217 kb on + strandat 24.217 kb on + strandat 24.234 kb on - strandat 24.248 kb on - strandat 24.250 kb on + strandat 24.827 kb on + strand, within H281DRAFT_03526at 24.827 kb on + strand, within H281DRAFT_03526at 24.864 kb on - strand, within H281DRAFT_03526at 24.915 kb on + strand, within H281DRAFT_03526at 24.915 kb on + strand, within H281DRAFT_03526at 24.915 kb on + strand, within H281DRAFT_03526at 24.916 kb on - strand, within H281DRAFT_03526at 24.916 kb on - strand, within H281DRAFT_03526

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
remove
23,042 + H281DRAFT_03523 0.68 +0.0
23,043 - H281DRAFT_03523 0.68 +0.2
23,328 - +0.7
23,359 + -2.0
23,359 + +0.5
23,360 - +1.8
23,413 + +0.4
23,413 + +1.4
23,413 + -1.1
23,413 + -0.3
23,413 + +0.5
23,413 + -1.2
23,413 + -0.5
23,414 - +0.0
23,513 + -2.9
23,514 - -1.1
23,514 - -0.7
23,514 - -0.7
23,514 - -0.1
23,514 - +2.5
23,565 + H281DRAFT_03524 0.20 -1.6
23,565 + H281DRAFT_03524 0.20 -1.0
23,566 - H281DRAFT_03524 0.21 -0.1
23,567 + H281DRAFT_03524 0.21 -0.8
23,568 - H281DRAFT_03524 0.21 +0.7
23,568 - H281DRAFT_03524 0.21 -1.9
23,568 - H281DRAFT_03524 0.21 -1.1
23,587 - H281DRAFT_03524 0.28 -0.8
23,758 - -0.0
23,774 + +0.7
23,774 + -0.3
23,774 + -0.5
23,805 + +1.2
23,805 + -0.1
23,805 + +0.1
23,805 + -0.6
23,805 + -0.6
23,805 + +1.2
23,805 + -0.4
23,805 + -0.1
23,881 + -1.1
23,889 + -0.5
23,889 + +0.5
23,912 + +0.1
23,912 + +0.7
23,923 + +0.5
23,923 + -1.2
23,923 + -2.0
23,924 - +0.5
23,924 - -0.6
23,924 - +0.5
23,924 - -1.7
23,961 + -0.4
23,961 + -2.1
23,979 + -2.0
23,979 + -1.0
23,979 + +0.1
23,980 - -0.1
23,980 - +0.2
23,980 - -0.7
23,991 - -1.3
24,015 - -0.4
24,016 - +0.3
24,029 + H281DRAFT_03525 0.13 -0.8
24,119 + H281DRAFT_03525 0.57 -0.7
24,120 - H281DRAFT_03525 0.57 +0.6
24,204 + +0.2
24,204 + +0.7
24,204 + -0.3
24,208 + +0.7
24,208 + -0.1
24,209 - -0.5
24,209 - -0.2
24,217 + +0.4
24,217 + -0.7
24,234 - +0.2
24,248 - +2.1
24,250 + +1.5
24,827 + H281DRAFT_03526 0.31 -0.1
24,827 + H281DRAFT_03526 0.31 +0.8
24,864 - H281DRAFT_03526 0.34 -0.1
24,915 + H281DRAFT_03526 0.37 -1.7
24,915 + H281DRAFT_03526 0.37 +0.5
24,915 + H281DRAFT_03526 0.37 +0.5
24,916 - H281DRAFT_03526 0.37 +0.8
24,916 - H281DRAFT_03526 0.37 -1.2

Or see this region's nucleotide sequence