Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03482

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03481 and H281DRAFT_03482 are separated by 200 nucleotidesH281DRAFT_03482 and H281DRAFT_03483 are separated by 186 nucleotides H281DRAFT_03481: H281DRAFT_03481 - PAP2 superfamily protein, at 565,009 to 565,344 _03481 H281DRAFT_03482: H281DRAFT_03482 - hypothetical protein, at 565,545 to 567,110 _03482 H281DRAFT_03483: H281DRAFT_03483 - Major Facilitator Superfamily protein, at 567,297 to 568,649 _03483 Position (kb) 565 566 567 568Strain fitness (log2 ratio) -2 -1 0 1at 564.746 kb on - strandat 565.040 kb on - strandat 565.467 kb on - strandat 565.674 kb on + strandat 565.675 kb on - strandat 566.113 kb on + strand, within H281DRAFT_03482at 566.280 kb on - strand, within H281DRAFT_03482at 566.281 kb on + strand, within H281DRAFT_03482at 566.282 kb on - strand, within H281DRAFT_03482at 566.447 kb on - strand, within H281DRAFT_03482at 566.727 kb on + strand, within H281DRAFT_03482at 567.091 kb on - strandat 567.230 kb on + strandat 567.276 kb on + strandat 567.554 kb on + strand, within H281DRAFT_03483at 567.622 kb on - strandat 567.888 kb on + strand, within H281DRAFT_03483at 568.054 kb on - strand, within H281DRAFT_03483at 568.054 kb on - strand, within H281DRAFT_03483

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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564,746 - +0.7
565,040 - -0.4
565,467 - +0.8
565,674 + +0.7
565,675 - +0.2
566,113 + H281DRAFT_03482 0.36 +0.2
566,280 - H281DRAFT_03482 0.47 +1.0
566,281 + H281DRAFT_03482 0.47 -0.1
566,282 - H281DRAFT_03482 0.47 +0.2
566,447 - H281DRAFT_03482 0.58 +0.8
566,727 + H281DRAFT_03482 0.75 -2.2
567,091 - -0.1
567,230 + -0.8
567,276 + +0.0
567,554 + H281DRAFT_03483 0.19 +1.0
567,622 - -0.1
567,888 + H281DRAFT_03483 0.44 -0.1
568,054 - H281DRAFT_03483 0.56 +0.4
568,054 - H281DRAFT_03483 0.56 +0.2

Or see this region's nucleotide sequence