Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03124 and H281DRAFT_03125 are separated by 156 nucleotides H281DRAFT_03125 and H281DRAFT_03126 overlap by 4 nucleotides H281DRAFT_03126 and H281DRAFT_03127 are separated by 1 nucleotides
H281DRAFT_03124: H281DRAFT_03124 - outer membrane porin, OprD family, at 157,103 to 158,665
_03124
H281DRAFT_03125: H281DRAFT_03125 - oligopeptide transport system ATP-binding protein, at 158,822 to 159,820
_03125
H281DRAFT_03126: H281DRAFT_03126 - oligopeptide transport system ATP-binding protein, at 159,817 to 160,818
_03126
H281DRAFT_03127: H281DRAFT_03127 - oligopeptide transport system permease protein, at 160,820 to 161,734
_03127
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.056 kb on - strand, within H281DRAFT_03124 at 158.056 kb on - strand, within H281DRAFT_03124 at 158.215 kb on - strand, within H281DRAFT_03124 at 158.250 kb on + strand, within H281DRAFT_03124 at 158.656 kb on + strand at 158.807 kb on + strand at 159.821 kb on - strand at 159.821 kb on - strand at 160.074 kb on - strand, within H281DRAFT_03126 at 160.136 kb on + strand, within H281DRAFT_03126 at 160.136 kb on + strand, within H281DRAFT_03126 at 160.137 kb on - strand, within H281DRAFT_03126 at 160.371 kb on - strand, within H281DRAFT_03126
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 158,056 - H281DRAFT_03124 0.61 -2.3 158,056 - H281DRAFT_03124 0.61 -0.9 158,215 - H281DRAFT_03124 0.71 -0.2 158,250 + H281DRAFT_03124 0.73 +1.5 158,656 + -3.3 158,807 + -0.1 159,821 - +0.2 159,821 - +1.0 160,074 - H281DRAFT_03126 0.26 -0.5 160,136 + H281DRAFT_03126 0.32 -1.1 160,136 + H281DRAFT_03126 0.32 -0.5 160,137 - H281DRAFT_03126 0.32 -0.4 160,371 - H281DRAFT_03126 0.55 +1.8
Or see this region's nucleotide sequence