Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02939

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02938 and H281DRAFT_02939 are separated by 313 nucleotidesH281DRAFT_02939 and H281DRAFT_02940 are separated by 379 nucleotides H281DRAFT_02938: H281DRAFT_02938 - Fucose 4-O-acetylase, at 550,511 to 551,602 _02938 H281DRAFT_02939: H281DRAFT_02939 - hypothetical protein, at 551,916 to 552,053 _02939 H281DRAFT_02940: H281DRAFT_02940 - beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24), at 552,433 to 553,365 _02940 Position (kb) 551 552 553Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 551.097 kb on - strand, within H281DRAFT_02938at 551.097 kb on - strand, within H281DRAFT_02938at 551.193 kb on - strand, within H281DRAFT_02938at 551.193 kb on - strand, within H281DRAFT_02938at 551.226 kb on + strand, within H281DRAFT_02938at 551.392 kb on + strand, within H281DRAFT_02938at 551.505 kb on - strandat 551.655 kb on - strandat 551.739 kb on + strandat 551.917 kb on + strandat 551.917 kb on + strandat 551.990 kb on + strand, within H281DRAFT_02939at 551.991 kb on - strand, within H281DRAFT_02939

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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551,097 - H281DRAFT_02938 0.54 -0.7
551,097 - H281DRAFT_02938 0.54 +0.0
551,193 - H281DRAFT_02938 0.62 +0.7
551,193 - H281DRAFT_02938 0.62 -0.3
551,226 + H281DRAFT_02938 0.65 +1.1
551,392 + H281DRAFT_02938 0.81 +0.4
551,505 - +0.9
551,655 - +0.6
551,739 + -1.5
551,917 + -4.0
551,917 + -0.8
551,990 + H281DRAFT_02939 0.54 -0.5
551,991 - H281DRAFT_02939 0.54 +0.3

Or see this region's nucleotide sequence