Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02933

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02932 and H281DRAFT_02933 are separated by 159 nucleotidesH281DRAFT_02933 and H281DRAFT_02934 are separated by 31 nucleotidesH281DRAFT_02934 and H281DRAFT_02935 are separated by 119 nucleotides H281DRAFT_02932: H281DRAFT_02932 - Major Facilitator Superfamily protein, at 543,230 to 543,679 _02932 H281DRAFT_02933: H281DRAFT_02933 - Tetratricopeptide repeat-containing protein, at 543,839 to 544,753 _02933 H281DRAFT_02934: H281DRAFT_02934 - hypothetical protein, at 544,785 to 545,087 _02934 H281DRAFT_02935: H281DRAFT_02935 - ATP-dependent transcriptional regulator, at 545,207 to 548,404 _02935 Position (kb) 543 544 545Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 543.000 kb on + strandat 543.000 kb on + strandat 543.001 kb on - strandat 543.082 kb on - strandat 543.082 kb on - strandat 543.177 kb on + strandat 543.201 kb on + strandat 543.416 kb on - strand, within H281DRAFT_02932at 543.461 kb on + strand, within H281DRAFT_02932at 543.461 kb on + strand, within H281DRAFT_02932at 543.558 kb on - strand, within H281DRAFT_02932at 543.571 kb on - strand, within H281DRAFT_02932at 543.571 kb on - strand, within H281DRAFT_02932at 543.630 kb on + strand, within H281DRAFT_02932at 543.631 kb on - strand, within H281DRAFT_02932at 543.631 kb on - strand, within H281DRAFT_02932at 543.631 kb on - strand, within H281DRAFT_02932at 543.633 kb on + strand, within H281DRAFT_02932at 543.633 kb on + strand, within H281DRAFT_02932at 543.634 kb on - strand, within H281DRAFT_02932at 543.634 kb on - strand, within H281DRAFT_02932at 543.778 kb on + strandat 543.778 kb on + strandat 543.778 kb on + strandat 543.779 kb on - strandat 543.779 kb on - strandat 543.840 kb on + strandat 543.841 kb on - strandat 543.853 kb on + strandat 543.882 kb on - strandat 543.882 kb on - strandat 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.987 kb on + strand, within H281DRAFT_02933at 543.987 kb on + strand, within H281DRAFT_02933at 543.988 kb on - strand, within H281DRAFT_02933at 544.082 kb on + strand, within H281DRAFT_02933at 544.190 kb on + strand, within H281DRAFT_02933at 544.193 kb on - strand, within H281DRAFT_02933at 544.193 kb on - strand, within H281DRAFT_02933at 544.193 kb on - strand, within H281DRAFT_02933at 544.445 kb on - strand, within H281DRAFT_02933at 544.459 kb on - strand, within H281DRAFT_02933at 544.459 kb on - strand, within H281DRAFT_02933at 544.577 kb on - strand, within H281DRAFT_02933at 544.582 kb on + strand, within H281DRAFT_02933at 544.582 kb on + strand, within H281DRAFT_02933at 544.586 kb on + strand, within H281DRAFT_02933at 544.587 kb on - strand, within H281DRAFT_02933at 544.643 kb on + strand, within H281DRAFT_02933at 544.669 kb on - strandat 544.746 kb on + strandat 544.746 kb on + strandat 544.939 kb on + strandat 544.941 kb on + strand, within H281DRAFT_02934at 544.942 kb on - strand, within H281DRAFT_02934at 544.942 kb on - strand, within H281DRAFT_02934at 544.989 kb on + strand, within H281DRAFT_02934at 545.057 kb on + strandat 545.058 kb on - strandat 545.058 kb on - strandat 545.471 kb on - strandat 545.471 kb on - strandat 545.600 kb on + strand, within H281DRAFT_02935at 545.600 kb on + strand, within H281DRAFT_02935at 545.601 kb on - strand, within H281DRAFT_02935at 545.647 kb on + strand, within H281DRAFT_02935at 545.720 kb on + strand, within H281DRAFT_02935at 545.721 kb on - strand, within H281DRAFT_02935

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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543,000 + +1.1
543,000 + +0.9
543,001 - +0.5
543,082 - +1.0
543,082 - +0.7
543,177 + +0.6
543,201 + +0.0
543,416 - H281DRAFT_02932 0.41 +0.0
543,461 + H281DRAFT_02932 0.51 +0.6
543,461 + H281DRAFT_02932 0.51 +0.6
543,558 - H281DRAFT_02932 0.73 +0.7
543,571 - H281DRAFT_02932 0.76 +2.1
543,571 - H281DRAFT_02932 0.76 -0.8
543,630 + H281DRAFT_02932 0.89 -0.5
543,631 - H281DRAFT_02932 0.89 +0.1
543,631 - H281DRAFT_02932 0.89 +0.7
543,631 - H281DRAFT_02932 0.89 -2.6
543,633 + H281DRAFT_02932 0.90 +2.0
543,633 + H281DRAFT_02932 0.90 +0.4
543,634 - H281DRAFT_02932 0.90 +0.6
543,634 - H281DRAFT_02932 0.90 +1.6
543,778 + +0.6
543,778 + -0.3
543,778 + +0.6
543,779 - +0.4
543,779 - +2.0
543,840 + +0.4
543,841 - -0.1
543,853 + -0.3
543,882 - +0.4
543,882 - +0.8
543,985 + H281DRAFT_02933 0.16 +0.6
543,985 + H281DRAFT_02933 0.16 +0.4
543,985 + H281DRAFT_02933 0.16 +1.0
543,985 + H281DRAFT_02933 0.16 -2.4
543,985 + H281DRAFT_02933 0.16 +0.5
543,985 + H281DRAFT_02933 0.16 -0.6
543,986 - H281DRAFT_02933 0.16 +0.5
543,986 - H281DRAFT_02933 0.16 -1.1
543,986 - H281DRAFT_02933 0.16 +1.3
543,986 - H281DRAFT_02933 0.16 +0.4
543,986 - H281DRAFT_02933 0.16 +0.3
543,986 - H281DRAFT_02933 0.16 -0.4
543,987 + H281DRAFT_02933 0.16 +0.1
543,987 + H281DRAFT_02933 0.16 -0.7
543,988 - H281DRAFT_02933 0.16 +0.5
544,082 + H281DRAFT_02933 0.27 -0.8
544,190 + H281DRAFT_02933 0.38 -1.7
544,193 - H281DRAFT_02933 0.39 +0.3
544,193 - H281DRAFT_02933 0.39 -0.6
544,193 - H281DRAFT_02933 0.39 +1.3
544,445 - H281DRAFT_02933 0.66 +0.2
544,459 - H281DRAFT_02933 0.68 -0.3
544,459 - H281DRAFT_02933 0.68 -0.5
544,577 - H281DRAFT_02933 0.81 -1.0
544,582 + H281DRAFT_02933 0.81 -0.1
544,582 + H281DRAFT_02933 0.81 +0.6
544,586 + H281DRAFT_02933 0.82 -3.2
544,587 - H281DRAFT_02933 0.82 +1.0
544,643 + H281DRAFT_02933 0.88 +0.6
544,669 - -3.0
544,746 + +0.5
544,746 + -0.0
544,939 + -0.8
544,941 + H281DRAFT_02934 0.51 +0.0
544,942 - H281DRAFT_02934 0.52 -0.3
544,942 - H281DRAFT_02934 0.52 +0.9
544,989 + H281DRAFT_02934 0.67 -0.0
545,057 + +1.0
545,058 - +0.9
545,058 - -0.2
545,471 - +0.7
545,471 - +0.2
545,600 + H281DRAFT_02935 0.12 +0.2
545,600 + H281DRAFT_02935 0.12 +1.2
545,601 - H281DRAFT_02935 0.12 +1.0
545,647 + H281DRAFT_02935 0.14 +0.5
545,720 + H281DRAFT_02935 0.16 +1.1
545,721 - H281DRAFT_02935 0.16 +0.1

Or see this region's nucleotide sequence