Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02729

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02728 and H281DRAFT_02729 are separated by 3 nucleotidesH281DRAFT_02729 and H281DRAFT_02730 are separated by 71 nucleotidesH281DRAFT_02730 and H281DRAFT_02731 overlap by 4 nucleotidesH281DRAFT_02731 and H281DRAFT_02732 overlap by 4 nucleotides H281DRAFT_02728: H281DRAFT_02728 - Uncharacterized conserved protein, DUF1501 family, at 314,228 to 315,376 _02728 H281DRAFT_02729: H281DRAFT_02729 - Uncharacterized conserved protein, DUF1800 family, at 315,380 to 316,915 _02729 H281DRAFT_02730: H281DRAFT_02730 - Uncharacterized membrane protein, at 316,987 to 317,496 _02730 H281DRAFT_02731: H281DRAFT_02731 - hypothetical protein, at 317,493 to 317,912 _02731 H281DRAFT_02732: H281DRAFT_02732 - RNA polymerase sigma-70 factor, ECF subfamily, at 317,909 to 318,469 _02732 Position (kb) 315 316 317Strain fitness (log2 ratio) -2 -1 0 1at 314.874 kb on + strand, within H281DRAFT_02728at 315.381 kb on + strandat 315.601 kb on + strand, within H281DRAFT_02729at 316.213 kb on + strand, within H281DRAFT_02729at 317.539 kb on - strand, within H281DRAFT_02731at 317.539 kb on - strand, within H281DRAFT_02731at 317.542 kb on + strand, within H281DRAFT_02731

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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314,874 + H281DRAFT_02728 0.56 -0.1
315,381 + -0.4
315,601 + H281DRAFT_02729 0.14 -1.6
316,213 + H281DRAFT_02729 0.54 -1.7
317,539 - H281DRAFT_02731 0.11 -2.5
317,539 - H281DRAFT_02731 0.11 +0.1
317,542 + H281DRAFT_02731 0.12 +0.4

Or see this region's nucleotide sequence