Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02614

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02612 and H281DRAFT_02613 are separated by 21 nucleotidesH281DRAFT_02613 and H281DRAFT_02614 overlap by 4 nucleotidesH281DRAFT_02614 and H281DRAFT_02615 are separated by 24 nucleotidesH281DRAFT_02615 and H281DRAFT_02616 are separated by 120 nucleotides H281DRAFT_02612: H281DRAFT_02612 - Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase, at 189,476 to 190,528 _02612 H281DRAFT_02613: H281DRAFT_02613 - amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-), at 190,550 to 191,299 _02613 H281DRAFT_02614: H281DRAFT_02614 - L-glutamine ABC transporter membrane protein, at 191,296 to 191,952 _02614 H281DRAFT_02615: H281DRAFT_02615 - glutamine transport system substrate-binding protein, at 191,977 to 192,723 _02615 H281DRAFT_02616: H281DRAFT_02616 - hypothetical protein, at 192,844 to 193,047 _02616 Position (kb) 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1at 190.437 kb on + strandat 190.438 kb on - strandat 190.508 kb on + strandat 190.634 kb on - strand, within H281DRAFT_02613at 190.634 kb on - strand, within H281DRAFT_02613at 190.634 kb on - strand, within H281DRAFT_02613at 190.634 kb on - strand, within H281DRAFT_02613at 190.875 kb on + strand, within H281DRAFT_02613at 190.875 kb on + strand, within H281DRAFT_02613at 191.186 kb on + strand, within H281DRAFT_02613at 191.299 kb on + strandat 191.452 kb on + strand, within H281DRAFT_02614at 191.816 kb on + strand, within H281DRAFT_02614at 191.817 kb on - strand, within H281DRAFT_02614at 192.170 kb on + strand, within H281DRAFT_02615at 192.171 kb on - strand, within H281DRAFT_02615at 192.171 kb on - strand, within H281DRAFT_02615at 192.171 kb on - strand, within H281DRAFT_02615at 192.173 kb on + strand, within H281DRAFT_02615at 192.173 kb on + strand, within H281DRAFT_02615at 192.401 kb on + strand, within H281DRAFT_02615at 192.404 kb on + strand, within H281DRAFT_02615at 192.404 kb on + strand, within H281DRAFT_02615at 192.925 kb on + strand, within H281DRAFT_02616

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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190,437 + +0.4
190,438 - -0.8
190,508 + +1.1
190,634 - H281DRAFT_02613 0.11 -0.1
190,634 - H281DRAFT_02613 0.11 -0.0
190,634 - H281DRAFT_02613 0.11 +0.5
190,634 - H281DRAFT_02613 0.11 +0.5
190,875 + H281DRAFT_02613 0.43 +0.0
190,875 + H281DRAFT_02613 0.43 +0.6
191,186 + H281DRAFT_02613 0.85 -1.4
191,299 + +1.4
191,452 + H281DRAFT_02614 0.24 -1.7
191,816 + H281DRAFT_02614 0.79 +0.9
191,817 - H281DRAFT_02614 0.79 +1.2
192,170 + H281DRAFT_02615 0.26 -0.5
192,171 - H281DRAFT_02615 0.26 +0.1
192,171 - H281DRAFT_02615 0.26 +0.2
192,171 - H281DRAFT_02615 0.26 -3.0
192,173 + H281DRAFT_02615 0.26 +1.2
192,173 + H281DRAFT_02615 0.26 -1.9
192,401 + H281DRAFT_02615 0.57 -0.6
192,404 + H281DRAFT_02615 0.57 +0.5
192,404 + H281DRAFT_02615 0.57 +0.9
192,925 + H281DRAFT_02616 0.40 -0.2

Or see this region's nucleotide sequence