Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02378

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02377 and H281DRAFT_02378 are separated by 166 nucleotidesH281DRAFT_02378 and H281DRAFT_02379 overlap by 1 nucleotides H281DRAFT_02377: H281DRAFT_02377 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 539,074 to 540,288 _02377 H281DRAFT_02378: H281DRAFT_02378 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 540,455 to 541,339 _02378 H281DRAFT_02379: H281DRAFT_02379 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 541,339 to 542,310 _02379 Position (kb) 540 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 539.506 kb on + strand, within H281DRAFT_02377at 539.507 kb on - strand, within H281DRAFT_02377at 539.519 kb on - strand, within H281DRAFT_02377at 539.524 kb on + strand, within H281DRAFT_02377at 539.524 kb on + strand, within H281DRAFT_02377at 539.525 kb on - strand, within H281DRAFT_02377at 539.590 kb on + strand, within H281DRAFT_02377at 539.608 kb on + strand, within H281DRAFT_02377at 539.609 kb on - strand, within H281DRAFT_02377at 539.609 kb on - strand, within H281DRAFT_02377at 539.609 kb on - strand, within H281DRAFT_02377at 539.793 kb on + strand, within H281DRAFT_02377at 539.793 kb on + strand, within H281DRAFT_02377at 539.794 kb on - strand, within H281DRAFT_02377at 539.794 kb on - strand, within H281DRAFT_02377at 539.856 kb on + strand, within H281DRAFT_02377at 539.871 kb on + strand, within H281DRAFT_02377at 539.871 kb on + strandat 539.913 kb on + strand, within H281DRAFT_02377at 539.962 kb on + strand, within H281DRAFT_02377at 539.962 kb on + strand, within H281DRAFT_02377at 540.028 kb on + strand, within H281DRAFT_02377at 540.028 kb on + strand, within H281DRAFT_02377at 540.028 kb on + strand, within H281DRAFT_02377at 540.112 kb on + strand, within H281DRAFT_02377at 540.112 kb on + strand, within H281DRAFT_02377at 540.112 kb on + strand, within H281DRAFT_02377at 540.124 kb on + strand, within H281DRAFT_02377at 540.125 kb on - strandat 540.160 kb on + strand, within H281DRAFT_02377at 540.160 kb on + strand, within H281DRAFT_02377at 540.160 kb on + strand, within H281DRAFT_02377at 540.160 kb on + strand, within H281DRAFT_02377at 540.208 kb on + strandat 540.208 kb on + strandat 540.212 kb on - strandat 540.363 kb on + strandat 540.446 kb on - strandat 540.641 kb on + strand, within H281DRAFT_02378at 540.642 kb on - strand, within H281DRAFT_02378at 540.642 kb on - strand, within H281DRAFT_02378at 540.656 kb on + strand, within H281DRAFT_02378at 540.755 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.811 kb on + strand, within H281DRAFT_02378at 540.812 kb on - strand, within H281DRAFT_02378at 540.812 kb on - strand, within H281DRAFT_02378at 540.816 kb on - strand, within H281DRAFT_02378at 540.816 kb on - strand, within H281DRAFT_02378at 540.816 kb on - strand, within H281DRAFT_02378at 540.836 kb on + strand, within H281DRAFT_02378at 540.897 kb on - strand, within H281DRAFT_02378at 541.055 kb on + strand, within H281DRAFT_02378at 541.055 kb on + strand, within H281DRAFT_02378at 541.056 kb on - strand, within H281DRAFT_02378at 541.352 kb on + strandat 541.352 kb on + strandat 541.357 kb on + strandat 541.358 kb on - strandat 541.406 kb on - strandat 541.406 kb on - strandat 541.474 kb on + strand, within H281DRAFT_02379at 541.475 kb on - strand, within H281DRAFT_02379at 541.526 kb on - strand, within H281DRAFT_02379at 541.526 kb on - strand, within H281DRAFT_02379at 541.537 kb on + strand, within H281DRAFT_02379at 541.651 kb on + strand, within H281DRAFT_02379at 541.652 kb on - strand, within H281DRAFT_02379at 541.652 kb on - strand, within H281DRAFT_02379at 541.690 kb on + strand, within H281DRAFT_02379at 541.690 kb on + strand, within H281DRAFT_02379at 541.691 kb on - strand, within H281DRAFT_02379at 541.798 kb on + strand, within H281DRAFT_02379at 541.820 kb on + strand, within H281DRAFT_02379at 541.821 kb on - strand, within H281DRAFT_02379at 541.922 kb on - strand, within H281DRAFT_02379at 541.926 kb on + strand, within H281DRAFT_02379at 541.927 kb on - strand, within H281DRAFT_02379at 542.021 kb on + strand, within H281DRAFT_02379at 542.022 kb on - strand, within H281DRAFT_02379at 542.235 kb on + strandat 542.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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539,506 + H281DRAFT_02377 0.36 -0.5
539,507 - H281DRAFT_02377 0.36 +2.2
539,519 - H281DRAFT_02377 0.37 +1.5
539,524 + H281DRAFT_02377 0.37 +0.6
539,524 + H281DRAFT_02377 0.37 +0.7
539,525 - H281DRAFT_02377 0.37 +0.3
539,590 + H281DRAFT_02377 0.42 +0.7
539,608 + H281DRAFT_02377 0.44 +0.6
539,609 - H281DRAFT_02377 0.44 -0.5
539,609 - H281DRAFT_02377 0.44 +0.0
539,609 - H281DRAFT_02377 0.44 +1.5
539,793 + H281DRAFT_02377 0.59 +0.7
539,793 + H281DRAFT_02377 0.59 -0.5
539,794 - H281DRAFT_02377 0.59 +0.9
539,794 - H281DRAFT_02377 0.59 +0.7
539,856 + H281DRAFT_02377 0.64 +0.1
539,871 + H281DRAFT_02377 0.66 +0.4
539,871 + -0.1
539,913 + H281DRAFT_02377 0.69 -3.1
539,962 + H281DRAFT_02377 0.73 +0.4
539,962 + H281DRAFT_02377 0.73 +0.2
540,028 + H281DRAFT_02377 0.79 -2.9
540,028 + H281DRAFT_02377 0.79 +1.5
540,028 + H281DRAFT_02377 0.79 +0.2
540,112 + H281DRAFT_02377 0.85 -0.4
540,112 + H281DRAFT_02377 0.85 -1.1
540,112 + H281DRAFT_02377 0.85 +0.2
540,124 + H281DRAFT_02377 0.86 -0.9
540,125 - +1.5
540,160 + H281DRAFT_02377 0.89 -3.1
540,160 + H281DRAFT_02377 0.89 -1.8
540,160 + H281DRAFT_02377 0.89 -1.0
540,160 + H281DRAFT_02377 0.89 -3.2
540,208 + -0.1
540,208 + +0.2
540,212 - -0.8
540,363 + -0.6
540,446 - +1.6
540,641 + H281DRAFT_02378 0.21 +1.8
540,642 - H281DRAFT_02378 0.21 +1.8
540,642 - H281DRAFT_02378 0.21 +2.7
540,656 + H281DRAFT_02378 0.23 +1.7
540,755 + H281DRAFT_02378 0.34 +1.0
540,811 + H281DRAFT_02378 0.40 +1.0
540,811 + H281DRAFT_02378 0.40 +2.3
540,811 + H281DRAFT_02378 0.40 +1.2
540,811 + H281DRAFT_02378 0.40 +1.7
540,812 - H281DRAFT_02378 0.40 +1.7
540,812 - H281DRAFT_02378 0.40 +1.2
540,816 - H281DRAFT_02378 0.41 +1.8
540,816 - H281DRAFT_02378 0.41 +1.4
540,816 - H281DRAFT_02378 0.41 -0.1
540,836 + H281DRAFT_02378 0.43 +1.4
540,897 - H281DRAFT_02378 0.50 +1.5
541,055 + H281DRAFT_02378 0.68 +1.2
541,055 + H281DRAFT_02378 0.68 +2.7
541,056 - H281DRAFT_02378 0.68 +0.9
541,352 + +2.0
541,352 + +0.8
541,357 + +1.5
541,358 - +0.9
541,406 - +0.5
541,406 - +0.8
541,474 + H281DRAFT_02379 0.14 +0.5
541,475 - H281DRAFT_02379 0.14 +0.3
541,526 - H281DRAFT_02379 0.19 +1.5
541,526 - H281DRAFT_02379 0.19 +1.6
541,537 + H281DRAFT_02379 0.20 +1.4
541,651 + H281DRAFT_02379 0.32 +1.1
541,652 - H281DRAFT_02379 0.32 +1.8
541,652 - H281DRAFT_02379 0.32 +1.4
541,690 + H281DRAFT_02379 0.36 +1.2
541,690 + H281DRAFT_02379 0.36 +0.3
541,691 - H281DRAFT_02379 0.36 +0.5
541,798 + H281DRAFT_02379 0.47 +1.3
541,820 + H281DRAFT_02379 0.49 +1.9
541,821 - H281DRAFT_02379 0.50 +1.7
541,922 - H281DRAFT_02379 0.60 +1.4
541,926 + H281DRAFT_02379 0.60 +1.4
541,927 - H281DRAFT_02379 0.60 +1.0
542,021 + H281DRAFT_02379 0.70 +1.3
542,022 - H281DRAFT_02379 0.70 +0.8
542,235 + +1.0
542,236 - -1.0

Or see this region's nucleotide sequence