Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01859 and H281DRAFT_01860 are separated by 297 nucleotides H281DRAFT_01860 and H281DRAFT_01861 are separated by 123 nucleotides H281DRAFT_01861 and H281DRAFT_01862 are separated by 30 nucleotides
H281DRAFT_01859: H281DRAFT_01859 - Protein of unknown function (DUF3300), at 772,197 to 773,582
_01859
H281DRAFT_01860: H281DRAFT_01860 - hypothetical protein, at 773,880 to 774,137
_01860
H281DRAFT_01861: H281DRAFT_01861 - Predicted periplasmic or secreted lipoprotein, at 774,261 to 774,638
_01861
H281DRAFT_01862: H281DRAFT_01862 - Outer membrane protein (porin), at 774,669 to 775,814
_01862
Position (kb) 774
775 Strain fitness (log2 ratio) -2
-1
0
1
2 at 773.580 kb on + strand at 773.627 kb on + strand at 773.627 kb on + strand at 773.628 kb on - strand at 773.890 kb on + strand at 773.891 kb on - strand at 773.897 kb on - strand at 774.263 kb on - strand at 774.656 kb on - strand at 774.708 kb on - strand at 774.736 kb on + strand at 775.022 kb on - strand, within H281DRAFT_01862 at 775.226 kb on - strand, within H281DRAFT_01862 at 775.414 kb on + strand, within H281DRAFT_01862 at 775.415 kb on - strand, within H281DRAFT_01862 at 775.627 kb on + strand, within H281DRAFT_01862
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 773,580 + +1.4 773,627 + -1.5 773,627 + +0.5 773,628 - +1.4 773,890 + -1.9 773,891 - -2.3 773,897 - +0.2 774,263 - -0.2 774,656 - +1.3 774,708 - +0.8 774,736 + +1.2 775,022 - H281DRAFT_01862 0.31 +0.5 775,226 - H281DRAFT_01862 0.49 -0.2 775,414 + H281DRAFT_01862 0.65 +2.3 775,415 - H281DRAFT_01862 0.65 +1.1 775,627 + H281DRAFT_01862 0.84 -0.2
Or see this region's nucleotide sequence