Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01334

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01333 and H281DRAFT_01334 are separated by 83 nucleotidesH281DRAFT_01334 and H281DRAFT_01335 overlap by 31 nucleotides H281DRAFT_01333: H281DRAFT_01333 - pyrroloquinoline quinone biosynthesis protein E, at 173,257 to 174,459 _01333 H281DRAFT_01334: H281DRAFT_01334 - two component transcriptional regulator, LuxR family, at 174,543 to 175,205 _01334 H281DRAFT_01335: H281DRAFT_01335 - Signal transduction histidine kinase, at 175,175 to 176,197 _01335 Position (kb) 174 175 176Strain fitness (log2 ratio) -1 0 1at 173.773 kb on + strand, within H281DRAFT_01333at 173.830 kb on + strand, within H281DRAFT_01333at 173.854 kb on + strand, within H281DRAFT_01333at 173.858 kb on - strand, within H281DRAFT_01333at 173.858 kb on - strand, within H281DRAFT_01333at 174.047 kb on + strand, within H281DRAFT_01333at 174.048 kb on - strand, within H281DRAFT_01333at 174.253 kb on + strand, within H281DRAFT_01333at 174.254 kb on - strand, within H281DRAFT_01333at 174.452 kb on - strandat 174.458 kb on - strandat 175.553 kb on + strand, within H281DRAFT_01335at 175.554 kb on - strand, within H281DRAFT_01335at 175.554 kb on - strand, within H281DRAFT_01335at 175.797 kb on + strand, within H281DRAFT_01335

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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173,773 + H281DRAFT_01333 0.43 -0.4
173,830 + H281DRAFT_01333 0.48 -0.6
173,854 + H281DRAFT_01333 0.50 +0.4
173,858 - H281DRAFT_01333 0.50 +1.0
173,858 - H281DRAFT_01333 0.50 -0.5
174,047 + H281DRAFT_01333 0.66 -0.3
174,048 - H281DRAFT_01333 0.66 +0.1
174,253 + H281DRAFT_01333 0.83 -1.7
174,254 - H281DRAFT_01333 0.83 +0.9
174,452 - +0.5
174,458 - +0.3
175,553 + H281DRAFT_01335 0.37 +1.2
175,554 - H281DRAFT_01335 0.37 +0.1
175,554 - H281DRAFT_01335 0.37 +1.1
175,797 + H281DRAFT_01335 0.61 +0.1

Or see this region's nucleotide sequence