Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01156

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01155 and H281DRAFT_01156 are separated by 108 nucleotidesH281DRAFT_01156 and H281DRAFT_01157 are separated by 41 nucleotides H281DRAFT_01155: H281DRAFT_01155 - 2,5-dioxopentanoate dehydrogenase (NAD+), at 1,304,301 to 1,305,746 _01155 H281DRAFT_01156: H281DRAFT_01156 - Protein N-acetyltransferase, RimJ/RimL family, at 1,305,855 to 1,306,433 _01156 H281DRAFT_01157: H281DRAFT_01157 - 2-keto-3-deoxygluconate permease, at 1,306,475 to 1,307,491 _01157 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -1 0 1at 1305.708 kb on + strandat 1305.744 kb on + strandat 1305.782 kb on + strandat 1305.789 kb on - strandat 1305.855 kb on - strandat 1305.855 kb on - strandat 1306.001 kb on + strand, within H281DRAFT_01156at 1306.147 kb on + strand, within H281DRAFT_01156at 1306.179 kb on - strand, within H281DRAFT_01156at 1306.347 kb on - strand, within H281DRAFT_01156at 1306.452 kb on + strandat 1306.452 kb on + strandat 1306.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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1,305,708 + +0.5
1,305,744 + -0.5
1,305,782 + +1.3
1,305,789 - -1.7
1,305,855 - -0.4
1,305,855 - -0.0
1,306,001 + H281DRAFT_01156 0.25 -1.0
1,306,147 + H281DRAFT_01156 0.50 +0.1
1,306,179 - H281DRAFT_01156 0.56 -1.7
1,306,347 - H281DRAFT_01156 0.85 +0.3
1,306,452 + -0.6
1,306,452 + -0.1
1,306,487 - -0.3

Or see this region's nucleotide sequence