Experiment: PYE 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03998 and CCNA_00464 are separated by 713 nucleotides
CCNA_03998: CCNA_03998 - GT1/WbuB-like N-acetyl-L-fucosamine transferase, at 475,532 to 476,800
_03998
CCNA_00464: CCNA_00464 - Undecaprenyl-phosphate sugar phosphotransferase-related protein, at 477,514 to 477,678
_00464
Position (kb) 475
476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 474.545 kb on + strand at 474.545 kb on + strand at 474.545 kb on + strand at 474.545 kb on + strand at 474.545 kb on + strand at 474.553 kb on + strand at 474.553 kb on - strand at 474.553 kb on - strand at 474.553 kb on - strand at 474.582 kb on - strand at 474.592 kb on + strand at 474.592 kb on + strand at 474.600 kb on - strand at 474.621 kb on + strand at 474.623 kb on + strand at 474.629 kb on - strand at 474.631 kb on - strand at 474.636 kb on + strand at 474.644 kb on - strand at 474.695 kb on + strand at 474.695 kb on + strand at 474.800 kb on - strand at 474.820 kb on + strand at 474.824 kb on + strand at 474.828 kb on - strand at 474.859 kb on + strand at 474.869 kb on + strand at 474.877 kb on - strand at 474.877 kb on - strand at 474.894 kb on - strand at 474.989 kb on - strand at 474.989 kb on - strand at 474.995 kb on + strand at 475.008 kb on - strand at 475.010 kb on + strand at 475.015 kb on + strand at 475.020 kb on + strand at 475.028 kb on - strand at 475.040 kb on + strand at 475.047 kb on + strand at 475.048 kb on - strand at 475.048 kb on - strand at 475.048 kb on - strand at 475.053 kb on - strand at 475.053 kb on - strand at 475.055 kb on - strand at 475.055 kb on - strand at 475.055 kb on - strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.069 kb on - strand at 475.075 kb on - strand at 475.075 kb on - strand at 475.075 kb on - strand at 475.075 kb on - strand at 475.075 kb on - strand at 475.078 kb on + strand at 475.086 kb on - strand at 475.135 kb on + strand at 475.143 kb on - strand at 475.190 kb on - strand at 475.233 kb on - strand at 475.233 kb on - strand at 475.259 kb on + strand at 475.259 kb on + strand at 475.260 kb on + strand at 475.260 kb on + strand at 475.260 kb on - strand at 475.268 kb on - strand at 475.268 kb on - strand at 475.268 kb on - strand at 475.268 kb on - strand at 475.268 kb on - strand at 475.282 kb on + strand at 475.330 kb on + strand at 475.368 kb on + strand at 475.378 kb on + strand at 475.386 kb on - strand at 475.396 kb on - strand at 475.402 kb on + strand at 475.410 kb on - strand at 475.417 kb on + strand at 475.417 kb on + strand at 475.425 kb on - strand at 475.444 kb on + strand at 475.447 kb on + strand at 475.447 kb on + strand at 475.455 kb on - strand at 475.455 kb on - strand at 475.455 kb on - strand at 475.462 kb on + strand at 475.464 kb on + strand at 475.466 kb on + strand at 475.472 kb on - strand at 475.496 kb on - strand at 475.506 kb on + strand at 475.512 kb on + strand at 475.526 kb on + strand at 475.529 kb on - strand at 475.553 kb on + strand at 475.554 kb on + strand at 475.554 kb on + strand at 475.555 kb on + strand at 475.571 kb on + strand at 475.572 kb on + strand at 475.602 kb on - strand at 475.610 kb on + strand at 475.630 kb on + strand at 475.650 kb on - strand at 475.660 kb on - strand, within CCNA_03998 at 475.660 kb on - strand, within CCNA_03998 at 475.668 kb on + strand, within CCNA_03998 at 475.676 kb on - strand, within CCNA_03998 at 475.683 kb on - strand, within CCNA_03998 at 475.697 kb on + strand, within CCNA_03998 at 475.704 kb on - strand, within CCNA_03998 at 475.704 kb on - strand, within CCNA_03998 at 475.718 kb on - strand, within CCNA_03998 at 475.756 kb on + strand, within CCNA_03998 at 475.786 kb on + strand, within CCNA_03998 at 475.793 kb on - strand, within CCNA_03998 at 475.868 kb on + strand, within CCNA_03998 at 475.870 kb on + strand, within CCNA_03998 at 475.877 kb on + strand, within CCNA_03998 at 475.877 kb on + strand, within CCNA_03998 at 475.877 kb on + strand, within CCNA_03998 at 475.879 kb on - strand, within CCNA_03998 at 475.914 kb on - strand, within CCNA_03998 at 475.919 kb on + strand, within CCNA_03998 at 475.919 kb on + strand, within CCNA_03998 at 475.926 kb on + strand, within CCNA_03998 at 475.926 kb on + strand, within CCNA_03998 at 475.934 kb on - strand, within CCNA_03998 at 475.965 kb on - strand, within CCNA_03998 at 475.965 kb on - strand, within CCNA_03998 at 475.993 kb on + strand, within CCNA_03998 at 476.034 kb on - strand, within CCNA_03998 at 476.060 kb on - strand, within CCNA_03998 at 476.060 kb on - strand, within CCNA_03998 at 476.078 kb on + strand, within CCNA_03998 at 476.086 kb on - strand, within CCNA_03998 at 476.117 kb on - strand, within CCNA_03998 at 476.121 kb on + strand, within CCNA_03998 at 476.150 kb on - strand, within CCNA_03998 at 476.191 kb on - strand, within CCNA_03998 at 476.203 kb on - strand, within CCNA_03998 at 476.219 kb on + strand, within CCNA_03998 at 476.234 kb on + strand, within CCNA_03998 at 476.242 kb on + strand, within CCNA_03998 at 476.242 kb on - strand, within CCNA_03998 at 476.277 kb on - strand, within CCNA_03998 at 476.281 kb on + strand, within CCNA_03998 at 476.283 kb on - strand, within CCNA_03998 at 476.306 kb on - strand, within CCNA_03998 at 476.306 kb on - strand, within CCNA_03998 at 476.324 kb on + strand, within CCNA_03998 at 476.330 kb on + strand, within CCNA_03998 at 476.344 kb on + strand, within CCNA_03998 at 476.352 kb on - strand, within CCNA_03998 at 476.357 kb on + strand, within CCNA_03998 at 476.359 kb on + strand, within CCNA_03998 at 476.414 kb on - strand, within CCNA_03998 at 476.420 kb on + strand, within CCNA_03998 at 476.423 kb on - strand, within CCNA_03998 at 476.436 kb on - strand, within CCNA_03998 at 476.470 kb on + strand, within CCNA_03998 at 476.516 kb on + strand, within CCNA_03998 at 476.544 kb on - strand, within CCNA_03998 at 476.544 kb on - strand, within CCNA_03998 at 476.552 kb on + strand, within CCNA_03998 at 476.572 kb on + strand, within CCNA_03998 at 476.580 kb on - strand, within CCNA_03998 at 476.594 kb on + strand, within CCNA_03998 at 476.609 kb on + strand, within CCNA_03998 at 476.609 kb on + strand, within CCNA_03998 at 476.616 kb on + strand, within CCNA_03998 at 476.651 kb on + strand, within CCNA_03998 at 476.659 kb on - strand, within CCNA_03998 at 476.659 kb on - strand, within CCNA_03998 at 476.674 kb on - strand at 476.748 kb on + strand at 476.748 kb on + strand at 476.765 kb on + strand at 476.779 kb on + strand at 476.779 kb on + strand at 476.799 kb on + strand at 476.808 kb on + strand at 476.808 kb on + strand at 476.808 kb on + strand at 476.808 kb on + strand at 476.834 kb on - strand at 476.872 kb on + strand at 476.872 kb on + strand at 476.872 kb on + strand at 476.872 kb on + strand at 476.880 kb on - strand at 476.880 kb on - strand at 476.880 kb on - strand at 476.880 kb on - strand at 476.910 kb on + strand at 476.910 kb on + strand at 476.910 kb on + strand at 476.914 kb on - strand at 476.918 kb on - strand at 477.017 kb on + strand at 477.212 kb on + strand at 477.212 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.254 kb on - strand at 477.280 kb on + strand at 477.280 kb on + strand at 477.297 kb on - strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.306 kb on + strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.324 kb on - strand at 477.332 kb on + strand at 477.348 kb on + strand at 477.370 kb on - strand at 477.390 kb on - strand at 477.390 kb on - strand at 477.474 kb on + strand at 477.474 kb on + strand at 477.474 kb on + strand at 477.482 kb on - strand at 477.492 kb on + strand at 477.493 kb on - strand at 477.495 kb on + strand at 477.495 kb on + strand at 477.495 kb on + strand at 477.495 kb on + strand at 477.495 kb on + strand at 477.503 kb on + strand at 477.503 kb on - strand at 477.503 kb on - strand at 477.503 kb on - strand at 477.506 kb on + strand at 477.506 kb on + strand at 477.517 kb on - strand at 477.551 kb on + strand, within CCNA_00464 at 477.556 kb on + strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.559 kb on - strand, within CCNA_00464 at 477.565 kb on + strand, within CCNA_00464 at 477.574 kb on - strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.579 kb on - strand, within CCNA_00464 at 477.583 kb on + strand, within CCNA_00464 at 477.584 kb on + strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.604 kb on - strand, within CCNA_00464 at 477.624 kb on + strand, within CCNA_00464 at 477.659 kb on - strand, within CCNA_00464 at 477.665 kb on + strand at 477.682 kb on + strand at 477.692 kb on - strand at 477.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days remove 474,545 + -1.0 474,545 + +1.9 474,545 + -0.5 474,545 + -1.6 474,545 + -2.2 474,553 + +2.7 474,553 - +0.9 474,553 - -2.1 474,553 - -1.1 474,582 - -2.2 474,592 + -3.5 474,592 + +1.1 474,600 - +0.3 474,621 + -0.6 474,623 + -0.9 474,629 - -0.3 474,631 - -2.1 474,636 + -2.0 474,644 - -1.1 474,695 + +0.5 474,695 + -0.5 474,800 - +1.3 474,820 + +2.0 474,824 + -0.2 474,828 - -0.9 474,859 + -0.4 474,869 + -0.8 474,877 - -0.9 474,877 - +0.5 474,894 - +1.8 474,989 - +1.5 474,989 - +0.9 474,995 + +1.1 475,008 - +0.6 475,010 + +2.1 475,015 + -1.6 475,020 + -0.2 475,028 - +0.1 475,040 + -2.0 475,047 + -0.2 475,048 - +0.9 475,048 - +0.7 475,048 - +1.0 475,053 - +1.2 475,053 - +1.8 475,055 - -0.6 475,055 - -0.1 475,055 - +1.5 475,067 + +1.1 475,067 + -3.3 475,067 + +1.5 475,067 + +0.4 475,067 + -2.1 475,069 - +2.6 475,075 - -2.0 475,075 - -1.2 475,075 - -1.2 475,075 - -0.3 475,075 - -0.1 475,078 + +0.9 475,086 - -2.0 475,135 + +1.0 475,143 - +0.1 475,190 - +0.5 475,233 - +1.3 475,233 - -0.4 475,259 + -0.1 475,259 + +0.9 475,260 + -1.9 475,260 + +2.3 475,260 - +1.5 475,268 - -0.8 475,268 - +1.8 475,268 - +1.2 475,268 - +0.9 475,268 - +1.7 475,282 + +1.5 475,330 + -2.8 475,368 + +0.8 475,378 + +0.1 475,386 - -1.3 475,396 - -2.7 475,402 + +0.1 475,410 - -0.3 475,417 + -2.0 475,417 + -1.1 475,425 - -0.1 475,444 + -0.3 475,447 + +0.7 475,447 + -1.6 475,455 - -0.7 475,455 - +0.9 475,455 - -1.3 475,462 + -1.3 475,464 + +0.7 475,466 + +1.3 475,472 - -1.1 475,496 - +2.5 475,506 + +1.2 475,512 + -0.2 475,526 + +0.3 475,529 - +0.7 475,553 + -1.5 475,554 + +0.8 475,554 + +1.1 475,555 + -1.1 475,571 + +1.7 475,572 + +2.6 475,602 - +0.8 475,610 + +3.2 475,630 + +3.6 475,650 - -1.2 475,660 - CCNA_03998 0.10 +6.2 475,660 - CCNA_03998 0.10 +2.5 475,668 + CCNA_03998 0.11 +4.0 475,676 - CCNA_03998 0.11 +2.6 475,683 - CCNA_03998 0.12 -0.7 475,697 + CCNA_03998 0.13 +4.0 475,704 - CCNA_03998 0.14 +2.8 475,704 - CCNA_03998 0.14 +2.5 475,718 - CCNA_03998 0.15 +4.4 475,756 + CCNA_03998 0.18 +4.6 475,786 + CCNA_03998 0.20 +4.3 475,793 - CCNA_03998 0.21 +4.7 475,868 + CCNA_03998 0.26 +4.2 475,870 + CCNA_03998 0.27 +4.0 475,877 + CCNA_03998 0.27 +3.7 475,877 + CCNA_03998 0.27 +3.9 475,877 + CCNA_03998 0.27 +4.0 475,879 - CCNA_03998 0.27 +0.7 475,914 - CCNA_03998 0.30 +3.1 475,919 + CCNA_03998 0.30 +4.1 475,919 + CCNA_03998 0.30 +3.5 475,926 + CCNA_03998 0.31 +4.2 475,926 + CCNA_03998 0.31 +4.7 475,934 - CCNA_03998 0.32 +5.8 475,965 - CCNA_03998 0.34 +2.3 475,965 - CCNA_03998 0.34 +4.0 475,993 + CCNA_03998 0.36 +6.9 476,034 - CCNA_03998 0.40 +4.1 476,060 - CCNA_03998 0.42 +6.3 476,060 - CCNA_03998 0.42 +3.6 476,078 + CCNA_03998 0.43 +4.3 476,086 - CCNA_03998 0.44 +0.4 476,117 - CCNA_03998 0.46 +4.0 476,121 + CCNA_03998 0.46 +2.4 476,150 - CCNA_03998 0.49 +3.1 476,191 - CCNA_03998 0.52 -0.8 476,203 - CCNA_03998 0.53 +2.3 476,219 + CCNA_03998 0.54 +3.3 476,234 + CCNA_03998 0.55 +3.5 476,242 + CCNA_03998 0.56 +2.9 476,242 - CCNA_03998 0.56 +3.7 476,277 - CCNA_03998 0.59 +3.2 476,281 + CCNA_03998 0.59 +3.2 476,283 - CCNA_03998 0.59 +1.9 476,306 - CCNA_03998 0.61 +3.0 476,306 - CCNA_03998 0.61 +2.9 476,324 + CCNA_03998 0.62 +3.5 476,330 + CCNA_03998 0.63 +4.5 476,344 + CCNA_03998 0.64 +3.7 476,352 - CCNA_03998 0.65 +2.3 476,357 + CCNA_03998 0.65 +3.4 476,359 + CCNA_03998 0.65 +3.3 476,414 - CCNA_03998 0.70 +1.5 476,420 + CCNA_03998 0.70 +3.2 476,423 - CCNA_03998 0.70 -0.3 476,436 - CCNA_03998 0.71 +3.5 476,470 + CCNA_03998 0.74 +3.8 476,516 + CCNA_03998 0.78 +4.2 476,544 - CCNA_03998 0.80 +1.5 476,544 - CCNA_03998 0.80 +1.7 476,552 + CCNA_03998 0.80 +4.0 476,572 + CCNA_03998 0.82 +4.1 476,580 - CCNA_03998 0.83 +3.3 476,594 + CCNA_03998 0.84 +5.0 476,609 + CCNA_03998 0.85 +5.0 476,609 + CCNA_03998 0.85 +4.5 476,616 + CCNA_03998 0.85 +3.7 476,651 + CCNA_03998 0.88 +2.9 476,659 - CCNA_03998 0.89 +1.5 476,659 - CCNA_03998 0.89 +2.5 476,674 - +2.5 476,748 + +6.4 476,748 + +4.2 476,765 + +2.7 476,779 + -0.3 476,779 + +0.3 476,799 + -0.9 476,808 + +0.5 476,808 + +1.1 476,808 + +1.0 476,808 + +0.3 476,834 - +2.5 476,872 + -1.1 476,872 + +0.7 476,872 + -2.1 476,872 + +0.9 476,880 - +2.5 476,880 - +0.2 476,880 - -0.5 476,880 - -0.8 476,910 + -1.3 476,910 + +1.4 476,910 + -2.9 476,914 - +0.5 476,918 - +2.5 477,017 + -0.3 477,212 + +0.9 477,212 + +2.5 477,246 + -0.3 477,246 + +1.2 477,246 + +0.3 477,254 - +0.3 477,280 + +4.3 477,280 + -0.6 477,297 - +0.2 477,304 + -1.0 477,304 + +0.5 477,304 + -0.7 477,304 + -2.8 477,304 + +1.7 477,304 + -1.1 477,306 + +1.7 477,312 - +2.5 477,312 - +0.5 477,312 - +3.0 477,312 - +2.5 477,324 - +2.5 477,332 + -1.1 477,348 + +1.4 477,370 - +2.5 477,390 - +2.5 477,390 - +2.5 477,474 + +0.1 477,474 + -0.4 477,474 + -0.6 477,482 - -0.8 477,492 + -0.9 477,493 - -2.2 477,495 + +0.2 477,495 + +2.5 477,495 + +1.4 477,495 + +0.2 477,495 + +0.9 477,503 + -0.1 477,503 - -1.0 477,503 - +2.1 477,503 - -1.9 477,506 + +0.1 477,506 + -1.2 477,517 - +0.9 477,551 + CCNA_00464 0.22 -0.2 477,556 + CCNA_00464 0.25 +0.0 477,558 - CCNA_00464 0.27 +0.9 477,559 - CCNA_00464 0.27 -0.6 477,565 + CCNA_00464 0.31 +2.9 477,574 - CCNA_00464 0.36 +0.0 477,576 + CCNA_00464 0.38 +2.1 477,576 + CCNA_00464 0.38 -1.7 477,576 + CCNA_00464 0.38 -2.2 477,579 - CCNA_00464 0.39 +1.2 477,583 + CCNA_00464 0.42 -0.6 477,584 + CCNA_00464 0.42 -2.8 477,584 - CCNA_00464 0.42 -0.3 477,584 - CCNA_00464 0.42 +1.9 477,584 - CCNA_00464 0.42 +0.5 477,584 - CCNA_00464 0.42 +0.2 477,604 - CCNA_00464 0.55 -0.3 477,624 + CCNA_00464 0.67 -0.1 477,659 - CCNA_00464 0.88 +0.5 477,665 + +0.5 477,682 + -0.1 477,692 - -1.6 477,794 + -1.7
Or see this region's nucleotide sequence