Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03219

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
3,378,757	-				-0.3
3,378,782	+		CCNA_03218	0.11	+1.9
3,378,789	-		CCNA_03218	0.12	-2.0
3,378,871	-		CCNA_03218	0.19	-1.3
3,378,906	-		CCNA_03218	0.22	+0.8
3,378,912	-		CCNA_03218	0.23	+0.3
3,378,931	-		CCNA_03218	0.25	+1.4
3,378,932	+		CCNA_03218	0.25	-0.4
3,378,999	-		CCNA_03218	0.31	-0.2
3,378,999	-		CCNA_03218	0.31	-0.2
3,379,029	+		CCNA_03218	0.34	-0.0
3,379,034	+		CCNA_03218	0.34	-1.4
3,379,042	-		CCNA_03218	0.35	+0.1
3,379,108	-		CCNA_03218	0.41	-0.2
3,379,109	+		CCNA_03218	0.41	-0.6
3,379,117	-		CCNA_03218	0.42	+1.4
3,379,135	+		CCNA_03218	0.44	-0.5
3,379,148	-		CCNA_03218	0.45	+1.3
3,379,167	-		CCNA_03218	0.47	+0.1
3,379,170	-		CCNA_03218	0.47	-2.3
3,379,209	+		CCNA_03218	0.51	+2.2
3,379,209	+		CCNA_03218	0.51	-2.4
3,379,214	+		CCNA_03218	0.51	-1.9
3,379,214	+		CCNA_03218	0.51	-0.4
3,379,214	+		CCNA_03218	0.51	+3.0
3,379,214	+		CCNA_03218	0.51	-0.2
3,379,214	+		CCNA_03218	0.51	+0.8
3,379,214	+		CCNA_03218	0.51	-0.5
3,379,231	+		CCNA_03218	0.53	-1.2
3,379,241	-		CCNA_03218	0.53	+0.4
3,379,243	+		CCNA_03218	0.54	-0.5
3,379,246	-		CCNA_03218	0.54	-0.4
3,379,275	-		CCNA_03218	0.57	-1.1
3,379,289	+		CCNA_03218	0.58	+0.1
3,379,318	+		CCNA_03218	0.61	+0.1
3,379,327	-		CCNA_03218	0.61	-2.6
3,379,393	+		CCNA_03218	0.68	-1.9
3,379,411	-		CCNA_03218	0.69	+1.8
3,379,413	+		CCNA_03218	0.69	+1.6
3,379,432	+		CCNA_03218	0.71	-0.3
3,379,447	-		CCNA_03218	0.73	-1.9
3,379,449	+		CCNA_03218	0.73	+1.5
3,379,459	+		CCNA_03218	0.74	-2.1
3,379,495	-		CCNA_03218	0.77	+0.8
3,379,505	+		CCNA_03218	0.78	-1.4
3,379,513	-		CCNA_03218	0.79	-0.5
3,379,516	+		CCNA_03218	0.79	-2.7
3,379,532	+		CCNA_03218	0.81	-0.3
3,379,532	+		CCNA_03218	0.81	-0.4
3,379,542	+		CCNA_03218	0.81	+0.8
3,379,548	-		CCNA_03218	0.82	-0.9
3,379,548	-		CCNA_03218	0.82	+2.7
3,379,586	+		CCNA_03218	0.86	+1.4
3,379,591	+		CCNA_03218	0.86	+0.5
3,379,591	+		CCNA_03218	0.86	+3.7
3,379,591	+		CCNA_03218	0.86	-1.1
3,379,591	+		CCNA_03218	0.86	-1.0
3,379,598	+		CCNA_03218	0.87	-2.8
3,379,598	+		CCNA_03218	0.87	+2.5
3,379,598	+		CCNA_03218	0.87	-2.2
3,379,599	-		CCNA_03218	0.87	-1.8
3,379,599	-		CCNA_03218	0.87	+1.0
3,379,606	-		CCNA_03218	0.87	-0.4
3,379,644	-				-1.8
3,379,644	-				+0.4
3,379,644	-				+3.6
3,379,644	-				+1.4
3,379,648	+				-1.9
3,379,656	+				-0.6
3,379,656	+				+0.9
3,379,656	-				+2.0
3,379,656	-				-0.8
3,379,658	+				-0.6
3,379,671	-				-2.9
3,379,682	+				-0.6
3,379,727	-				-2.1
3,379,735	+				-0.2
3,379,742	+				-1.2
3,379,742	+				+0.1
3,379,743	-				+1.8
3,379,800	+				+3.0
3,379,808	-				-1.9
3,379,808	-				-1.4
3,379,832	+				-0.9
3,379,840	-				-1.6
3,379,888	+				-1.6
3,379,898	+				+1.0
3,379,898	+				-2.6
3,379,898	+				-1.7
3,379,906	-				+0.1
3,379,906	-				-0.6
3,379,924	-				-0.7
3,379,975	-				-0.0
3,380,004	-				+0.1
3,380,009	-				-1.2
3,380,015	+				-1.5
3,380,032	-				+3.8
3,380,061	+		CCNA_03219	0.10	-0.3
3,380,073	-		CCNA_03219	0.11	+0.2
3,380,091	-		CCNA_03219	0.11	-0.6
3,380,114	+		CCNA_03219	0.12	-1.7
3,380,114	+		CCNA_03219	0.12	-1.3
3,380,114	+		CCNA_03219	0.12	+2.0
3,380,114	+		CCNA_03219	0.12	-2.0
3,380,115	-		CCNA_03219	0.12	-0.6
3,380,122	-		CCNA_03219	0.12	-0.3
3,380,122	-		CCNA_03219	0.12	+3.9
3,380,122	-		CCNA_03219	0.12	+2.5
3,380,163	-		CCNA_03219	0.14	-2.5
3,380,174	+		CCNA_03219	0.14	-0.2
3,380,174	+		CCNA_03219	0.14	-3.0
3,380,174	+		CCNA_03219	0.14	-0.9
3,380,174	+		CCNA_03219	0.14	+2.1
3,380,174	+		CCNA_03219	0.14	-1.2
3,380,182	-		CCNA_03219	0.14	-0.5
3,380,192	-		CCNA_03219	0.15	+1.4
3,380,267	+		CCNA_03219	0.17	-1.0
3,380,267	+		CCNA_03219	0.17	-2.7
3,380,275	-		CCNA_03219	0.17	+0.4
3,380,275	-		CCNA_03219	0.17	-1.0
3,380,275	-		CCNA_03219	0.17	-3.0
3,380,275	-		CCNA_03219	0.17	+0.3
3,380,280	-		CCNA_03219	0.17	-0.8
3,380,310	-		CCNA_03219	0.18	-3.1
3,380,311	+		CCNA_03219	0.18	-0.5
3,380,319	-		CCNA_03219	0.19	-2.3
3,380,375	+		CCNA_03219	0.21	-0.3
3,380,402	+		CCNA_03219	0.21	-0.3
3,380,410	-		CCNA_03219	0.22	+1.7
3,380,410	-		CCNA_03219	0.22	+1.4
3,380,410	-		CCNA_03219	0.22	-1.3
3,380,448	+		CCNA_03219	0.23	-0.8
3,380,508	-		CCNA_03219	0.25	-0.2
3,380,511	+		CCNA_03219	0.25	-0.8
3,380,532	+		CCNA_03219	0.26	-0.6
3,380,545	-		CCNA_03219	0.26	-2.9
3,380,574	-		CCNA_03219	0.27	-3.3
3,380,585	+		CCNA_03219	0.27	+0.3
3,380,585	+		CCNA_03219	0.27	-1.0
3,380,593	-		CCNA_03219	0.28	+2.4
3,380,593	-		CCNA_03219	0.28	+0.8
3,380,595	+		CCNA_03219	0.28	+1.9
3,380,631	+		CCNA_03219	0.29	-2.4
3,380,642	-		CCNA_03219	0.29	+2.6
3,380,642	-		CCNA_03219	0.29	-2.1
3,380,642	-		CCNA_03219	0.29	-0.6
3,380,642	-		CCNA_03219	0.29	+0.3
3,380,642	-		CCNA_03219	0.29	-0.6
3,380,670	-		CCNA_03219	0.30	-2.2
3,380,686	+		CCNA_03219	0.31	-2.8
3,380,703	+		CCNA_03219	0.31	+1.4
3,380,707	+		CCNA_03219	0.31	-3.3
3,380,749	-		CCNA_03219	0.33	-1.2
3,380,768	-		CCNA_03219	0.33	+0.1
3,380,770	+		CCNA_03219	0.33	-2.4
3,380,772	+		CCNA_03219	0.33	-0.8
3,380,772	+		CCNA_03219	0.33	+2.4
3,380,777	+		CCNA_03219	0.34	-1.2
3,380,780	-		CCNA_03219	0.34	-2.7
3,380,780	-		CCNA_03219	0.34	-1.3
3,380,868	-		CCNA_03219	0.37	+0.9
3,380,885	+		CCNA_03219	0.37	-0.4
3,380,886	+		CCNA_03219	0.37	-2.8
3,380,888	-		CCNA_03219	0.37	-1.6
3,380,888	-		CCNA_03219	0.37	-2.7
3,380,893	-		CCNA_03219	0.37	-0.6
3,380,920	+		CCNA_03219	0.38	-0.9
3,380,920	+		CCNA_03219	0.38	-2.2
3,380,922	+		CCNA_03219	0.38	-1.8
3,380,956	-		CCNA_03219	0.39	-2.2
3,381,010	+		CCNA_03219	0.41	+0.7
3,381,023	+		CCNA_03219	0.42	+2.5
3,381,041	+		CCNA_03219	0.42	-0.8
3,381,049	-		CCNA_03219	0.42	-2.9
3,381,059	+		CCNA_03219	0.43	-0.9
3,381,147	-		CCNA_03219	0.46	+0.1
3,381,169	-		CCNA_03219	0.46	-0.8
3,381,178	-		CCNA_03219	0.47	+1.4
3,381,225	-		CCNA_03219	0.48	-0.4
3,381,256	+		CCNA_03219	0.49	+0.4
3,381,284	+		CCNA_03219	0.50	-0.4
3,381,301	+		CCNA_03219	0.51	-0.2
3,381,315	-		CCNA_03219	0.51	-1.2
3,381,325	-		CCNA_03219	0.51	-1.3
3,381,325	-		CCNA_03219	0.51	-0.6
3,381,332	-		CCNA_03219	0.52	-2.2
3,381,338	-		CCNA_03219	0.52	-1.3
3,381,361	+		CCNA_03219	0.53	+1.4
3,381,361	+		CCNA_03219	0.53	-3.3
3,381,418	-		CCNA_03219	0.55	-0.5
3,381,423	-		CCNA_03219	0.55	-0.5
3,381,443	+		CCNA_03219	0.55	+2.4
3,381,448	+		CCNA_03219	0.55	+2.0
3,381,464	-		CCNA_03219	0.56	-1.5
3,381,527	-		CCNA_03219	0.58	-0.8
3,381,542	+		CCNA_03219	0.59	+1.4
3,381,566	-		CCNA_03219	0.59	-0.2
3,381,595	+		CCNA_03219	0.60	-2.7
3,381,604	-		CCNA_03219	0.61	+2.4
3,381,636	+				-1.9
3,381,641	+		CCNA_03219	0.62	-2.2
3,381,649	-		CCNA_03219	0.62	+1.3
3,381,683	-		CCNA_03219	0.63	-2.2
3,381,759	+		CCNA_03219	0.66	+0.1
3,381,759	+		CCNA_03219	0.66	-1.4
3,381,759	+		CCNA_03219	0.66	-2.3
3,381,759	+		CCNA_03219	0.66	-1.6
3,381,759	+				+3.4
3,381,760	-		CCNA_03219	0.66	+0.1
3,381,767	+		CCNA_03219	0.66	-0.8
3,381,767	-		CCNA_03219	0.66	-2.6
3,381,767	-		CCNA_03219	0.66	-2.4
3,381,767	-		CCNA_03219	0.66	-1.0
3,381,767	-		CCNA_03219	0.66	-2.2
3,381,767	-		CCNA_03219	0.66	-1.2
3,381,767	-		CCNA_03219	0.66	-1.8
3,381,767	-		CCNA_03219	0.66	-1.7
3,381,767	-		CCNA_03219	0.66	+0.9
3,381,767	-		CCNA_03219	0.66	-1.7
3,381,767	-		CCNA_03219	0.66	-0.2
3,381,767	-		CCNA_03219	0.66	+0.2
3,381,767	-		CCNA_03219	0.66	-3.7
3,381,769	+		CCNA_03219	0.66	-0.6
3,381,777	-		CCNA_03219	0.66	-1.3
3,381,821	-		CCNA_03219	0.68	-2.9
3,381,873	+		CCNA_03219	0.69	+0.2
3,381,891	-		CCNA_03219	0.70	-0.1
3,381,891	-		CCNA_03219	0.70	+1.2
3,381,891	-		CCNA_03219	0.70	-2.0
3,381,998	+		CCNA_03219	0.73	+0.6
3,381,998	-		CCNA_03219	0.73	-1.3
3,382,024	+		CCNA_03219	0.74	-2.2
3,382,024	+		CCNA_03219	0.74	-1.6
3,382,055	+		CCNA_03219	0.75	+1.8
3,382,055	+		CCNA_03219	0.75	-0.2
3,382,063	-		CCNA_03219	0.76	-2.6
3,382,065	+		CCNA_03219	0.76	-0.8
3,382,065	+		CCNA_03219	0.76	+0.9
3,382,095	-		CCNA_03219	0.77	-1.0
3,382,119	+		CCNA_03219	0.77	-0.5
3,382,119	+		CCNA_03219	0.77	+0.3
3,382,119	+		CCNA_03219	0.77	-3.2
3,382,119	+		CCNA_03219	0.77	-0.2
3,382,127	-		CCNA_03219	0.78	-0.8
3,382,127	-		CCNA_03219	0.78	-0.4
3,382,140	-		CCNA_03219	0.78	-0.2
3,382,140	-		CCNA_03219	0.78	-1.8
3,382,238	-		CCNA_03219	0.81	-2.6
3,382,280	-		CCNA_03219	0.83	-1.4
3,382,297	+		CCNA_03219	0.83	+2.4
3,382,305	-		CCNA_03219	0.83	-2.4
3,382,317	+		CCNA_03219	0.84	-0.1
3,382,325	+		CCNA_03219	0.84	-0.8
3,382,328	-		CCNA_03219	0.84	-0.6
3,382,378	-		CCNA_03219	0.86	-3.8
3,382,384	-		CCNA_03219	0.86	+0.5
3,382,401	-		CCNA_03219	0.87	+2.7
3,382,414	+		CCNA_03219	0.87	+0.1
3,382,419	+		CCNA_03219	0.87	-2.0
3,382,448	+		CCNA_03219	0.88	+0.4
3,382,463	-		CCNA_03219	0.89	-1.2
3,382,513	+				+0.9
3,382,577	+				-0.1
3,382,578	+				+0.2
3,382,586	-				-1.7
3,382,642	-				+0.5
3,382,676	+				-0.9
3,382,684	-				-0.6
3,382,684	-				+0.0
3,382,691	+				+1.2
3,382,699	-				-1.5
3,382,704	-				+1.4
3,382,711	-				+2.4
3,382,737	+				-1.8
3,382,747	+				+2.1
3,382,753	-				+2.4
3,382,787	-				+2.4
3,382,798	+				+1.8
3,382,837	-				-1.4
3,382,862	+				+1.2
3,382,889	-				-0.4
3,382,889	-				+0.8
3,382,919	-				-0.1
3,382,933	+				-2.0
3,382,933	+				-0.4
3,382,941	-				-2.6
3,382,941	-				-0.2
3,382,987	-				-0.7
3,382,994	-				-1.5
3,383,001	+				+0.8
3,383,001	+				-1.8
3,383,004	-				-3.5
3,383,009	-				+2.9
3,383,011	-				-2.1
3,383,014	+				+0.4
3,383,014	+				-0.0
3,383,022	-				+0.1
3,383,034	+				+2.2
3,383,040	-				-0.4
3,383,047	+				+0.7
3,383,061	+				-1.4
3,383,064	-				+0.6
3,383,079	+				-2.0
3,383,079	+				+1.8
3,383,079	+				+0.6
3,383,079	+				+1.8
3,383,079	+				+1.5
3,383,079	+				+0.2
3,383,087	-				+0.1
3,383,089	+				+1.0
3,383,090	+				+0.5
3,383,098	-				-0.4
3,383,113	+				+1.3
3,383,151	+				-1.9
3,383,151	+				-1.0
3,383,245	-		CCNA_03221	0.15	+2.4
3,383,245	-		CCNA_03221	0.15	+0.8
3,383,245	-		CCNA_03221	0.15	-2.6
3,383,245	-		CCNA_03221	0.15	+1.4
3,383,266	+		CCNA_03221	0.16	-0.7
3,383,317	+		CCNA_03221	0.19	+1.3
3,383,317	+		CCNA_03221	0.19	+0.7
3,383,318	-		CCNA_03221	0.19	-1.8
3,383,325	-		CCNA_03221	0.20	-1.6
3,383,330	+		CCNA_03221	0.20	+1.1
3,383,330	+		CCNA_03221	0.20	-0.5
3,383,356	-		CCNA_03221	0.22	+0.4
3,383,374	-		CCNA_03221	0.23	+4.0
3,383,408	+		CCNA_03221	0.25	+0.4
3,383,463	+		CCNA_03221	0.28	+0.4
3,383,463	+		CCNA_03221	0.28	+1.2
3,383,463	+		CCNA_03221	0.28	+2.3
3,383,480	+		CCNA_03221	0.29	-0.8
3,383,480	-		CCNA_03221	0.29	+0.2
3,383,484	+		CCNA_03221	0.29	+0.3
3,383,492	-		CCNA_03221	0.30	+0.4
3,383,520	+		CCNA_03221	0.32	+1.2
3,383,541	-		CCNA_03221	0.33	-1.6
3,383,595	+		CCNA_03221	0.36	+3.2
3,383,595	+		CCNA_03221	0.36	+0.3
3,383,679	-		CCNA_03221	0.41	+2.4
3,383,721	-		CCNA_03221	0.44	-0.4
3,383,728	+		CCNA_03221	0.44	-0.5
3,383,757	-		CCNA_03221	0.46	-0.6
3,383,808	+		CCNA_03221	0.49	+0.5
3,383,808	+		CCNA_03221	0.49	-1.5