Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03181

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
3,339,431	-				+0.7
3,339,431	-				-2.5
3,339,431	-				-2.7
3,339,433	+				-2.4
3,339,584	+		CCNA_03180	0.23	+1.3
3,339,590	+		CCNA_03180	0.24	+0.9
3,339,598	+		CCNA_03180	0.25	+0.1
3,339,600	+		CCNA_03180	0.25	-0.7
3,339,613	+		CCNA_03180	0.27	-0.7
3,339,620	+		CCNA_03180	0.28	-0.2
3,339,663	+		CCNA_03180	0.34	-0.9
3,339,673	-		CCNA_03180	0.35	-1.9
3,339,688	-		CCNA_03180	0.37	-1.8
3,339,748	+		CCNA_03180	0.45	+2.4
3,339,751	-		CCNA_03180	0.46	-1.6
3,339,751	-		CCNA_03180	0.46	-1.6
3,339,756	-		CCNA_03180	0.46	-2.3
3,339,799	-		CCNA_03180	0.52	-0.1
3,339,809	+		CCNA_03180	0.54	-2.3
3,339,810	+		CCNA_03180	0.54	+0.1
3,339,817	-		CCNA_03180	0.55	+0.1
3,339,828	-		CCNA_03180	0.56	-0.4
3,339,828	-		CCNA_03180	0.56	+0.4
3,339,828	-		CCNA_03180	0.56	-0.3
3,339,853	-		CCNA_03180	0.60	-1.6
3,339,875	+		CCNA_03180	0.63	-1.1
3,339,961	+		CCNA_03180	0.74	-0.4
3,339,962	+		CCNA_03180	0.75	+1.4
3,339,969	-		CCNA_03180	0.76	+1.2
3,339,972	+		CCNA_03180	0.76	-1.6
3,339,980	-		CCNA_03180	0.77	+2.6
3,339,986	+		CCNA_03180	0.78	-1.6
3,339,994	-		CCNA_03180	0.79	-0.1
3,340,062	+		CCNA_03180	0.88	+0.1
3,340,081	-				-1.6
3,340,081	-				+0.1
3,340,088	-				-0.8
3,340,136	-				-2.3
3,340,249	-				-0.7
3,340,253	+				-1.7
3,340,253	+				+3.4
3,340,253	+				-2.4
3,340,253	+				+0.4
3,340,253	+				-1.9
3,340,253	+				-1.7
3,340,253	+				-2.6
3,340,253	+				+1.0
3,340,253	+				-0.0
3,340,253	+				-0.1
3,340,253	+				-0.1
3,340,261	-				+0.9
3,340,261	-				-0.6
3,340,261	-				-1.5
3,340,261	-				+1.2
3,340,261	-				-2.0
3,340,261	-				+0.4
3,340,261	-				+0.1
3,340,261	-				-1.0
3,340,320	-				+0.1
3,340,327	-				-0.3
3,340,355	+				+2.0
3,340,439	+				-0.7
3,340,439	+				-2.0
3,340,439	+				-1.6
3,340,439	+				-1.2
3,340,465	+				-3.4
3,340,465	+				+1.5
3,340,526	-				-2.5
3,340,567	+		CCNA_03181	0.11	-0.9
3,340,567	+		CCNA_03181	0.11	+0.6
3,340,575	-		CCNA_03181	0.12	-0.9
3,340,642	-		CCNA_03181	0.17	+1.9
3,340,648	+		CCNA_03181	0.18	-2.1
3,340,648	+		CCNA_03181	0.18	-3.4
3,340,648	+		CCNA_03181	0.18	+1.5
3,340,656	-		CCNA_03181	0.18	-1.4
3,340,656	-		CCNA_03181	0.18	-1.4
3,340,656	-		CCNA_03181	0.18	+0.1
3,340,658	+		CCNA_03181	0.18	-1.7
3,340,666	-		CCNA_03181	0.19	+0.5
3,340,745	+		CCNA_03181	0.25	-0.5
3,340,749	+		CCNA_03181	0.25	-2.7
3,340,764	-		CCNA_03181	0.27	-1.0
3,340,799	+		CCNA_03181	0.29	-0.4
3,340,802	-		CCNA_03181	0.30	-2.1
3,340,825	-		CCNA_03181	0.31	-2.4
3,340,838	+		CCNA_03181	0.32	-0.4
3,340,864	+		CCNA_03181	0.35	-2.7
3,340,875	+		CCNA_03181	0.35	+1.5
3,340,898	+		CCNA_03181	0.37	-1.5
3,340,903	+		CCNA_03181	0.38	-1.1
3,340,911	-		CCNA_03181	0.38	+0.9
3,340,911	-		CCNA_03181	0.38	-1.1
3,340,911	-		CCNA_03181	0.38	+0.5
3,340,911	-		CCNA_03181	0.38	-0.4
3,340,911	-		CCNA_03181	0.38	-2.1
3,340,954	-		CCNA_03181	0.42	-2.2
3,340,961	-		CCNA_03181	0.42	-0.8
3,340,976	+		CCNA_03181	0.43	-1.4
3,340,985	-		CCNA_03181	0.44	-1.6
3,340,987	+		CCNA_03181	0.44	-0.5
3,340,990	-		CCNA_03181	0.44	-1.1
3,341,013	+		CCNA_03181	0.46	-1.5
3,341,037	-		CCNA_03181	0.48	-0.9
3,341,053	+		CCNA_03181	0.49	+0.9
3,341,056	-		CCNA_03181	0.50	-1.9
3,341,061	-		CCNA_03181	0.50	-1.0
3,341,061	-		CCNA_03181	0.50	+0.1
3,341,061	-		CCNA_03181	0.50	-1.1
3,341,061	-		CCNA_03181	0.50	-3.1
3,341,073	+		CCNA_03181	0.51	-2.0
3,341,073	+		CCNA_03181	0.51	-0.5
3,341,073	+		CCNA_03181	0.51	-1.1
3,341,081	-		CCNA_03181	0.52	+0.2
3,341,101	-		CCNA_03181	0.53	-1.5
3,341,157	-		CCNA_03181	0.57	-2.2
3,341,172	-		CCNA_03181	0.59	-0.9
3,341,191	-		CCNA_03181	0.60	-0.7
3,341,206	-		CCNA_03181	0.61	+2.5
3,341,235	+		CCNA_03181	0.64	+1.1
3,341,235	+		CCNA_03181	0.64	-0.6
3,341,253	+		CCNA_03181	0.65	-2.5
3,341,261	-		CCNA_03181	0.66	-1.2
3,341,261	-		CCNA_03181	0.66	+0.1
3,341,266	-		CCNA_03181	0.66	+2.5
3,341,319	-		CCNA_03181	0.70	-0.2
3,341,387	+		CCNA_03181	0.76	-1.7
3,341,390	-		CCNA_03181	0.76	-0.1
3,341,390	-		CCNA_03181	0.76	+0.5
3,341,400	-		CCNA_03181	0.77	+0.1
3,341,411	+		CCNA_03181	0.77	+1.8
3,341,450	+		CCNA_03181	0.80	-2.2
3,341,476	-		CCNA_03181	0.83	-2.1
3,341,494	+		CCNA_03181	0.84	-0.1
3,341,544	+		CCNA_03181	0.88	-0.3
3,341,600	+				+0.4
3,341,603	-				+2.4
3,341,617	+				+0.1
3,341,625	-				-1.3
3,341,627	+				+1.9
3,341,632	+				-2.2
3,341,632	+				-0.9
3,341,635	-				-0.1
3,341,640	-				-1.1
3,341,646	+				-1.6
3,341,654	-				-3.8
3,341,654	-				-0.4
3,341,680	+				+0.9
3,341,696	-				+2.4
3,341,702	+				+0.3
3,341,747	+				+0.6
3,341,811	-				-0.6
3,341,854	-				-1.5
3,341,880	+				+0.1
3,341,882	+				-0.9
3,341,895	-				+0.2
3,341,905	+		CCNA_03182	0.12	-0.6
3,341,920	+		CCNA_03182	0.16	-1.9
3,341,964	-		CCNA_03182	0.27	+0.1
3,341,995	-		CCNA_03182	0.36	-1.4
3,342,113	+		CCNA_03182	0.67	-1.1
3,342,113	+		CCNA_03182	0.67	-0.3
3,342,113	+		CCNA_03182	0.67	+0.1
3,342,113	+		CCNA_03182	0.67	+0.8
3,342,113	+		CCNA_03182	0.67	+0.7
3,342,113	+		CCNA_03182	0.67	+0.6
3,342,113	+		CCNA_03182	0.67	+1.4
3,342,113	+		CCNA_03182	0.67	+1.2
3,342,113	+		CCNA_03182	0.67	-2.7
3,342,113	+		CCNA_03182	0.67	-1.3
3,342,125	+		CCNA_03182	0.71	-0.3
3,342,151	+		CCNA_03182	0.78	-2.4
3,342,162	+		CCNA_03182	0.81	-1.6
3,342,169	+		CCNA_03182	0.83	-0.7
3,342,169	+		CCNA_03182	0.83	-1.7
3,342,177	-		CCNA_03182	0.85	+2.4
3,342,204	+				+2.3
3,342,212	-				-0.5
3,342,212	-				-1.6
3,342,212	-				+0.7
3,342,212	-				+0.6
3,342,212	-				+1.2
3,342,213	-				+0.5
3,342,222	-				+1.9
3,342,254	+				+1.4
3,342,292	+				-0.7
3,342,295	-				+0.9
3,342,315	-				-0.7
3,342,315	-				-1.3
3,342,321	-				+1.7
3,342,354	+				+0.8
3,342,354	+				-0.1
3,342,354	+				+0.4
3,342,354	+				+2.4
3,342,354	+				+0.9
3,342,354	+				+1.4
3,342,362	-				+0.8
3,342,362	-				-1.4
3,342,362	-				+0.5
3,342,362	-				+0.2
3,342,362	-				+1.2
3,342,362	-				-1.3
3,342,362	-				+1.8
3,342,362	-				-0.3
3,342,420	-				+1.8
3,342,432	-				+0.6
3,342,434	+				-0.4
3,342,435	+				+1.4
3,342,454	-		CCNA_03183	0.10	-2.6
3,342,462	+		CCNA_03183	0.11	-1.1
3,342,471	-		CCNA_03183	0.11	-2.3
3,342,521	-		CCNA_03183	0.14	+4.0
3,342,524	+		CCNA_03183	0.15	-2.2
3,342,550	-		CCNA_03183	0.16	+2.3
3,342,550	-		CCNA_03183	0.16	+1.4
3,342,557	+		CCNA_03183	0.17	-2.8
3,342,565	-		CCNA_03183	0.17	-1.9
3,342,605	+				+0.4
3,342,684	+		CCNA_03183	0.24	-3.5