Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02604

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
2,748,915	-		CCNA_02603	0.30	+0.6
2,748,936	+		CCNA_02603	0.31	-2.8
2,748,946	-		CCNA_02603	0.32	-2.4
2,748,971	+		CCNA_02603	0.34	+1.6
2,748,971	+		CCNA_02603	0.34	-1.7
2,748,971	+		CCNA_02603	0.34	-2.8
2,748,971	+		CCNA_02603	0.34	+0.4
2,748,971	+		CCNA_02603	0.34	-1.3
2,748,974	-		CCNA_02603	0.34	-1.6
2,748,979	-		CCNA_02603	0.34	-0.8
2,748,979	-		CCNA_02603	0.34	+1.0
2,748,979	-				-1.6
2,748,979	-		CCNA_02603	0.34	-0.7
2,748,981	+		CCNA_02603	0.35	-0.8
2,748,984	-		CCNA_02603	0.35	-2.1
2,748,989	-		CCNA_02603	0.35	-0.4
2,748,996	+		CCNA_02603	0.36	-0.7
2,749,030	+		CCNA_02603	0.38	+2.6
2,749,030	+		CCNA_02603	0.38	-1.7
2,749,038	+		CCNA_02603	0.39	-1.1
2,749,045	+		CCNA_02603	0.40	-1.0
2,749,055	-		CCNA_02603	0.40	+1.6
2,749,152	-		CCNA_02603	0.48	+1.5
2,749,180	-		CCNA_02603	0.50	-0.4
2,749,266	+		CCNA_02603	0.57	+1.1
2,749,266	+		CCNA_02603	0.57	+0.9
2,749,266	+		CCNA_02603	0.57	-2.0
2,749,266	+		CCNA_02603	0.57	-1.1
2,749,266	+		CCNA_02603	0.57	-0.7
2,749,267	-		CCNA_02603	0.57	+2.4
2,749,267	-		CCNA_02603	0.57	+1.0
2,749,274	-		CCNA_02603	0.57	-1.5
2,749,276	+		CCNA_02603	0.58	-1.6
2,749,310	-		CCNA_02603	0.60	-1.5
2,749,362	+		CCNA_02603	0.64	-0.3
2,749,375	-		CCNA_02603	0.65	-1.8
2,749,389	+		CCNA_02603	0.66	-1.1
2,749,389	+		CCNA_02603	0.66	-1.6
2,749,389	+		CCNA_02603	0.66	-1.0
2,749,389	+		CCNA_02603	0.66	+1.5
2,749,394	+		CCNA_02603	0.67	-0.4
2,749,394	+		CCNA_02603	0.67	-0.4
2,749,397	-		CCNA_02603	0.67	+4.8
2,749,397	-		CCNA_02603	0.67	-2.4
2,749,397	-		CCNA_02603	0.67	+0.0
2,749,397	-		CCNA_02603	0.67	-1.0
2,749,402	-		CCNA_02603	0.67	-0.2
2,749,404	+		CCNA_02603	0.68	-1.7
2,749,404	+		CCNA_02603	0.68	-1.9
2,749,420	-		CCNA_02603	0.69	-2.2
2,749,452	-		CCNA_02603	0.71	+2.0
2,749,459	-		CCNA_02603	0.72	+2.6
2,749,464	-		CCNA_02603	0.72	-2.2
2,749,498	-		CCNA_02603	0.75	-0.2
2,749,516	+		CCNA_02603	0.76	+0.6
2,749,529	-		CCNA_02603	0.77	+0.4
2,749,537	+		CCNA_02603	0.78	-1.0
2,749,542	+		CCNA_02603	0.78	-2.8
2,749,542	+		CCNA_02603	0.78	-1.9
2,749,550	-		CCNA_02603	0.79	-1.5
2,749,550	-		CCNA_02603	0.79	-1.5
2,749,556	+		CCNA_02603	0.79	-0.6
2,749,561	-		CCNA_02603	0.80	-2.9
2,749,616	+		CCNA_02603	0.84	+0.4
2,749,616	-		CCNA_02603	0.84	+0.3
2,749,621	+		CCNA_02603	0.84	-1.1
2,749,621	+		CCNA_02603	0.84	-0.1
2,749,621	+		CCNA_02603	0.84	-2.7
2,749,622	-		CCNA_02603	0.84	-2.5
2,749,627	+		CCNA_02603	0.85	-1.6
2,749,642	-		CCNA_02603	0.86	+0.0
2,749,701	+				-2.1
2,749,708	+				-3.6
2,749,710	-				-1.1
2,749,727	+				-0.2
2,749,728	+				-2.3
2,749,761	+				+2.0
2,749,765	-				-0.2
2,749,793	+				+3.9
2,749,801	-				+2.7
2,749,885	+				-1.0
2,749,900	+				-0.9
2,749,900	+				-0.3
2,749,903	-				-2.4
2,749,945	-		CCNA_02604	0.10	-1.7
2,749,949	+		CCNA_02604	0.11	-1.1
2,749,975	-		CCNA_02604	0.17	-1.9
2,750,014	+		CCNA_02604	0.27	+0.4
2,750,024	-		CCNA_02604	0.29	-0.5
2,750,031	+		CCNA_02604	0.31	-3.0
2,750,034	+				+0.3
2,750,061	+		CCNA_02604	0.38	-1.6
2,750,070	+		CCNA_02604	0.40	-0.7
2,750,119	+		CCNA_02604	0.52	-2.1
2,750,143	+		CCNA_02604	0.58	-0.4
2,750,143	+		CCNA_02604	0.58	-4.3
2,750,143	+		CCNA_02604	0.58	-0.2
2,750,151	-		CCNA_02604	0.59	-2.8
2,750,198	+		CCNA_02604	0.71	-3.1
2,750,198	+		CCNA_02604	0.71	-2.4
2,750,206	-		CCNA_02604	0.73	-0.2
2,750,206	-		CCNA_02604	0.73	-1.2
2,750,206	-		CCNA_02604	0.73	-1.7
2,750,206	-		CCNA_02604	0.73	-0.3
2,750,206	-		CCNA_02604	0.73	-0.4
2,750,217	+		CCNA_02604	0.75	-1.8
2,750,227	+		CCNA_02604	0.78	-1.4
2,750,246	+		CCNA_02604	0.82	-1.0
2,750,246	+		CCNA_02604	0.82	-3.0
2,750,264	-		CCNA_02604	0.87	-1.4
2,750,298	+				-1.8
2,750,300	-				-1.7
2,750,306	-				-3.2
2,750,306	-				-1.5
2,750,314	-				+0.0
2,750,353	-				+0.5
2,750,359	+				+1.0
2,750,409	+				-1.0
2,750,409	+				-1.2
2,750,409	+				+1.0
2,750,409	+				+2.6
2,750,409	+				-1.7
2,750,409	+				-1.0
2,750,417	-				+0.5
2,750,417	-				-1.6
2,750,417	-				+0.6
2,750,417	-				+2.1
2,750,417	-				-0.5
2,750,417	-				-1.2
2,750,417	-				-2.0
2,750,425	+				-0.9
2,750,425	+				-2.4
2,750,433	-				-0.5
2,750,433	-				+4.0
2,750,446	-				+1.2
2,750,451	-				+2.4
2,750,460	+				+2.6
2,750,460	+				+0.3
2,750,475	-				-2.2
2,750,515	-		CCNA_02605	0.13	-0.1
2,750,515	-		CCNA_02605	0.13	-2.2
2,750,515	-		CCNA_02605	0.13	-1.6
2,750,517	+		CCNA_02605	0.13	-2.3
2,750,525	-		CCNA_02605	0.14	+1.1
2,750,525	-		CCNA_02605	0.14	+1.6
2,750,556	+		CCNA_02605	0.18	+1.3
2,750,586	+		CCNA_02605	0.22	+1.0
2,750,611	+		CCNA_02605	0.25	+0.0
2,750,611	+		CCNA_02605	0.25	+2.6
2,750,619	-		CCNA_02605	0.26	+1.6
2,750,712	-		CCNA_02605	0.38	+1.5
2,750,727	+		CCNA_02605	0.40	-1.6
2,750,745	-		CCNA_02605	0.42	-0.2
2,750,745	-		CCNA_02605	0.42	+1.0
2,750,772	+		CCNA_02605	0.45	+1.6
2,750,791	+		CCNA_02605	0.48	+0.0
2,750,799	-		CCNA_02605	0.49	+0.5
2,750,799	-		CCNA_02605	0.49	-2.2
2,750,817	+		CCNA_02605	0.51	-2.3
2,750,817	+		CCNA_02605	0.51	+1.0
2,750,844	-		CCNA_02605	0.55	+1.2
2,750,862	+		CCNA_02605	0.57	-1.2
2,750,862	+		CCNA_02605	0.57	-2.4
2,750,862	+		CCNA_02605	0.57	-0.9
2,750,870	-		CCNA_02605	0.58	+0.2
2,750,870	-		CCNA_02605	0.58	+0.3
2,750,874	+		CCNA_02605	0.58	+0.6
2,750,914	-		CCNA_02605	0.63	+2.0
2,750,950	+		CCNA_02605	0.68	+1.0
2,750,950	+		CCNA_02605	0.68	+0.0
2,750,958	-		CCNA_02605	0.69	-2.0
2,750,958	-		CCNA_02605	0.69	+1.1
2,750,969	-		CCNA_02605	0.70	+0.1
2,751,017	-		CCNA_02605	0.76	+5.5
2,751,034	+		CCNA_02605	0.79	-1.5
2,751,034	+		CCNA_02605	0.79	+0.0
2,751,066	-		CCNA_02605	0.83	+1.5
2,751,106	-		CCNA_02605	0.88	+0.3
2,751,116	-		CCNA_02605	0.89	-0.9
2,751,123	-		CCNA_02605	0.90	-1.0
2,751,140	-				+1.8
2,751,154	-				+1.2
2,751,154	-				+0.7
2,751,161	+				+1.7
2,751,169	-				-0.6
2,751,169	-				-0.7
2,751,171	+				-1.1
2,751,179	-				+2.9
2,751,181	+				-0.9
2,751,181	+				-0.4
2,751,189	-				-1.3
2,751,217	-				-1.1
2,751,262	-				+1.9
2,751,264	-				-1.9
2,751,289	-				+1.5
2,751,294	-				+0.1
2,751,301	+				-1.4
2,751,311	+				-2.2
2,751,313	-				-1.7
2,751,314	-				+3.6