Experiment: PYE 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02129 and CCNA_02130 are separated by 64 nucleotides CCNA_02130 and CCNA_02131 are separated by 19 nucleotides
CCNA_02129: CCNA_02129 - acyl-CoA dehydrogenase, short-chain specific, at 2,282,731 to 2,283,864
_02129
CCNA_02130: CCNA_02130 - pyruvate kinase, at 2,283,929 to 2,285,359
_02130
CCNA_02131: CCNA_02131 - glucan 1,4-beta-glucosidase, at 2,285,379 to 2,287,844
_02131
Position (kb)
2283
2284
2285
2286 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2282.934 kb on - strand, within CCNA_02129 at 2282.934 kb on - strand, within CCNA_02129 at 2282.955 kb on - strand, within CCNA_02129 at 2282.955 kb on - strand, within CCNA_02129 at 2282.969 kb on + strand, within CCNA_02129 at 2282.969 kb on + strand, within CCNA_02129 at 2283.057 kb on + strand, within CCNA_02129 at 2283.065 kb on - strand, within CCNA_02129 at 2283.187 kb on + strand, within CCNA_02129 at 2283.202 kb on - strand, within CCNA_02129 at 2283.225 kb on + strand, within CCNA_02129 at 2283.246 kb on - strand, within CCNA_02129 at 2283.251 kb on - strand, within CCNA_02129 at 2283.272 kb on - strand, within CCNA_02129 at 2283.277 kb on + strand, within CCNA_02129 at 2283.278 kb on - strand, within CCNA_02129 at 2283.280 kb on - strand, within CCNA_02129 at 2283.282 kb on + strand, within CCNA_02129 at 2283.290 kb on - strand, within CCNA_02129 at 2283.310 kb on - strand, within CCNA_02129 at 2283.325 kb on - strand, within CCNA_02129 at 2283.328 kb on + strand, within CCNA_02129 at 2283.402 kb on - strand, within CCNA_02129 at 2283.402 kb on - strand, within CCNA_02129 at 2283.405 kb on + strand, within CCNA_02129 at 2283.414 kb on + strand, within CCNA_02129 at 2283.414 kb on + strand, within CCNA_02129 at 2283.414 kb on + strand, within CCNA_02129 at 2283.414 kb on + strand, within CCNA_02129 at 2283.422 kb on - strand, within CCNA_02129 at 2283.422 kb on - strand, within CCNA_02129 at 2283.422 kb on - strand, within CCNA_02129 at 2283.436 kb on + strand, within CCNA_02129 at 2283.437 kb on - strand, within CCNA_02129 at 2283.472 kb on + strand, within CCNA_02129 at 2283.472 kb on - strand, within CCNA_02129 at 2283.505 kb on + strand, within CCNA_02129 at 2283.513 kb on - strand, within CCNA_02129 at 2283.513 kb on - strand, within CCNA_02129 at 2283.513 kb on - strand, within CCNA_02129 at 2283.513 kb on - strand, within CCNA_02129 at 2283.518 kb on - strand, within CCNA_02129 at 2283.518 kb on - strand, within CCNA_02129 at 2283.523 kb on - strand, within CCNA_02129 at 2283.543 kb on + strand, within CCNA_02129 at 2283.547 kb on - strand, within CCNA_02129 at 2283.555 kb on + strand, within CCNA_02129 at 2283.555 kb on + strand, within CCNA_02129 at 2283.563 kb on - strand, within CCNA_02129 at 2283.565 kb on + strand, within CCNA_02129 at 2283.573 kb on - strand, within CCNA_02129 at 2283.573 kb on - strand, within CCNA_02129 at 2283.573 kb on - strand, within CCNA_02129 at 2283.605 kb on - strand, within CCNA_02129 at 2283.649 kb on + strand, within CCNA_02129 at 2283.684 kb on + strand, within CCNA_02129 at 2283.684 kb on + strand, within CCNA_02129 at 2283.684 kb on + strand, within CCNA_02129 at 2283.692 kb on - strand, within CCNA_02129 at 2283.692 kb on - strand, within CCNA_02129 at 2283.717 kb on + strand, within CCNA_02129 at 2283.722 kb on + strand, within CCNA_02129 at 2283.727 kb on + strand, within CCNA_02129 at 2283.732 kb on + strand, within CCNA_02129 at 2283.775 kb on - strand at 2283.818 kb on - strand at 2283.918 kb on + strand at 2283.948 kb on - strand at 2283.965 kb on + strand at 2283.998 kb on + strand at 2284.049 kb on - strand at 2284.056 kb on - strand at 2284.057 kb on - strand at 2284.092 kb on - strand, within CCNA_02130 at 2284.094 kb on + strand, within CCNA_02130 at 2284.117 kb on + strand, within CCNA_02130 at 2284.117 kb on + strand, within CCNA_02130 at 2284.117 kb on + strand, within CCNA_02130 at 2284.125 kb on + strand, within CCNA_02130 at 2284.125 kb on + strand, within CCNA_02130 at 2284.125 kb on + strand, within CCNA_02130 at 2284.125 kb on + strand, within CCNA_02130 at 2284.128 kb on - strand, within CCNA_02130 at 2284.133 kb on - strand, within CCNA_02130 at 2284.133 kb on - strand, within CCNA_02130 at 2284.133 kb on - strand, within CCNA_02130 at 2284.139 kb on + strand, within CCNA_02130 at 2284.152 kb on + strand, within CCNA_02130 at 2284.152 kb on + strand, within CCNA_02130 at 2284.152 kb on + strand, within CCNA_02130 at 2284.160 kb on - strand, within CCNA_02130 at 2284.160 kb on - strand, within CCNA_02130 at 2284.160 kb on - strand, within CCNA_02130 at 2284.172 kb on + strand, within CCNA_02130 at 2284.172 kb on + strand, within CCNA_02130 at 2284.180 kb on - strand, within CCNA_02130 at 2284.185 kb on - strand, within CCNA_02130 at 2284.222 kb on + strand, within CCNA_02130 at 2284.240 kb on - strand, within CCNA_02130 at 2284.327 kb on - strand, within CCNA_02130 at 2284.327 kb on - strand, within CCNA_02130 at 2284.329 kb on + strand, within CCNA_02130 at 2284.332 kb on - strand, within CCNA_02130 at 2284.337 kb on - strand, within CCNA_02130 at 2284.339 kb on + strand, within CCNA_02130 at 2284.339 kb on + strand, within CCNA_02130 at 2284.342 kb on - strand, within CCNA_02130 at 2284.347 kb on - strand, within CCNA_02130 at 2284.457 kb on + strand, within CCNA_02130 at 2284.457 kb on + strand, within CCNA_02130 at 2284.465 kb on - strand, within CCNA_02130 at 2284.487 kb on - strand, within CCNA_02130 at 2284.503 kb on - strand, within CCNA_02130 at 2284.559 kb on - strand, within CCNA_02130 at 2284.581 kb on + strand, within CCNA_02130 at 2284.596 kb on + strand, within CCNA_02130 at 2284.715 kb on - strand, within CCNA_02130 at 2284.730 kb on + strand, within CCNA_02130 at 2284.755 kb on + strand, within CCNA_02130 at 2284.760 kb on + strand, within CCNA_02130 at 2284.762 kb on + strand, within CCNA_02130 at 2284.762 kb on + strand, within CCNA_02130 at 2284.763 kb on - strand, within CCNA_02130 at 2284.763 kb on - strand, within CCNA_02130 at 2284.763 kb on - strand, within CCNA_02130 at 2284.763 kb on - strand, within CCNA_02130 at 2284.770 kb on - strand, within CCNA_02130 at 2284.772 kb on + strand, within CCNA_02130 at 2284.774 kb on + strand, within CCNA_02130 at 2284.781 kb on + strand, within CCNA_02130 at 2284.781 kb on + strand, within CCNA_02130 at 2284.794 kb on - strand, within CCNA_02130 at 2284.794 kb on - strand, within CCNA_02130 at 2284.804 kb on - strand, within CCNA_02130 at 2284.804 kb on - strand, within CCNA_02130 at 2284.820 kb on + strand, within CCNA_02130 at 2284.820 kb on + strand, within CCNA_02130 at 2284.820 kb on + strand, within CCNA_02130 at 2284.828 kb on - strand, within CCNA_02130 at 2284.835 kb on + strand, within CCNA_02130 at 2284.879 kb on - strand, within CCNA_02130 at 2284.913 kb on + strand, within CCNA_02130 at 2284.920 kb on + strand, within CCNA_02130 at 2284.920 kb on + strand, within CCNA_02130 at 2284.921 kb on - strand, within CCNA_02130 at 2284.921 kb on - strand, within CCNA_02130 at 2284.921 kb on - strand, within CCNA_02130 at 2284.921 kb on - strand, within CCNA_02130 at 2284.928 kb on - strand, within CCNA_02130 at 2284.943 kb on - strand, within CCNA_02130 at 2284.945 kb on - strand, within CCNA_02130 at 2284.967 kb on - strand, within CCNA_02130 at 2285.102 kb on - strand, within CCNA_02130 at 2285.137 kb on + strand, within CCNA_02130 at 2285.137 kb on + strand, within CCNA_02130 at 2285.145 kb on - strand, within CCNA_02130 at 2285.145 kb on - strand, within CCNA_02130 at 2285.145 kb on - strand, within CCNA_02130 at 2285.145 kb on - strand, within CCNA_02130 at 2285.225 kb on + strand at 2285.262 kb on - strand at 2285.271 kb on - strand at 2285.274 kb on + strand at 2285.282 kb on - strand at 2285.282 kb on - strand at 2285.282 kb on - strand at 2285.282 kb on - strand at 2285.304 kb on - strand at 2285.304 kb on - strand at 2285.324 kb on - strand at 2285.389 kb on - strand at 2285.389 kb on - strand at 2285.571 kb on + strand at 2285.683 kb on - strand, within CCNA_02131 at 2285.724 kb on - strand, within CCNA_02131 at 2285.727 kb on + strand, within CCNA_02131 at 2285.740 kb on - strand, within CCNA_02131 at 2285.740 kb on - strand, within CCNA_02131 at 2285.771 kb on - strand, within CCNA_02131 at 2285.778 kb on + strand, within CCNA_02131 at 2285.786 kb on - strand, within CCNA_02131 at 2285.796 kb on - strand, within CCNA_02131 at 2285.834 kb on - strand, within CCNA_02131 at 2285.904 kb on - strand, within CCNA_02131 at 2285.931 kb on + strand, within CCNA_02131 at 2285.936 kb on + strand, within CCNA_02131 at 2285.936 kb on + strand, within CCNA_02131 at 2285.939 kb on - strand, within CCNA_02131 at 2285.944 kb on - strand, within CCNA_02131 at 2286.016 kb on + strand, within CCNA_02131 at 2286.024 kb on - strand, within CCNA_02131 at 2286.095 kb on + strand, within CCNA_02131 at 2286.103 kb on - strand, within CCNA_02131 at 2286.136 kb on - strand, within CCNA_02131 at 2286.143 kb on + strand, within CCNA_02131 at 2286.143 kb on + strand, within CCNA_02131 at 2286.143 kb on + strand, within CCNA_02131 at 2286.162 kb on - strand, within CCNA_02131 at 2286.213 kb on - strand, within CCNA_02131 at 2286.238 kb on - strand, within CCNA_02131 at 2286.238 kb on - strand at 2286.245 kb on - strand, within CCNA_02131 at 2286.286 kb on + strand, within CCNA_02131 at 2286.286 kb on + strand, within CCNA_02131
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days remove 2,282,934 - CCNA_02129 0.18 -0.8 2,282,934 - CCNA_02129 0.18 +0.3 2,282,955 - CCNA_02129 0.20 -3.2 2,282,955 - CCNA_02129 0.20 -1.0 2,282,969 + CCNA_02129 0.21 -0.5 2,282,969 + CCNA_02129 0.21 -1.1 2,283,057 + CCNA_02129 0.29 -1.9 2,283,065 - CCNA_02129 0.29 -2.3 2,283,187 + CCNA_02129 0.40 -1.6 2,283,202 - CCNA_02129 0.42 -1.9 2,283,225 + CCNA_02129 0.44 +1.5 2,283,246 - CCNA_02129 0.45 -0.4 2,283,251 - CCNA_02129 0.46 -0.6 2,283,272 - CCNA_02129 0.48 -0.3 2,283,277 + CCNA_02129 0.48 -0.3 2,283,278 - CCNA_02129 0.48 -1.8 2,283,280 - CCNA_02129 0.48 -0.4 2,283,282 + CCNA_02129 0.49 +2.2 2,283,290 - CCNA_02129 0.49 +0.6 2,283,310 - CCNA_02129 0.51 -2.7 2,283,325 - CCNA_02129 0.52 -0.5 2,283,328 + CCNA_02129 0.53 -1.0 2,283,402 - CCNA_02129 0.59 -2.2 2,283,402 - CCNA_02129 0.59 -0.1 2,283,405 + CCNA_02129 0.59 -1.5 2,283,414 + CCNA_02129 0.60 +3.3 2,283,414 + CCNA_02129 0.60 +1.3 2,283,414 + CCNA_02129 0.60 +1.8 2,283,414 + CCNA_02129 0.60 -1.7 2,283,422 - CCNA_02129 0.61 -0.0 2,283,422 - CCNA_02129 0.61 +0.1 2,283,422 - CCNA_02129 0.61 +1.5 2,283,436 + CCNA_02129 0.62 -0.3 2,283,437 - CCNA_02129 0.62 -2.8 2,283,472 + CCNA_02129 0.65 -2.3 2,283,472 - CCNA_02129 0.65 -0.8 2,283,505 + CCNA_02129 0.68 +2.6 2,283,513 - CCNA_02129 0.69 +2.3 2,283,513 - CCNA_02129 0.69 -0.0 2,283,513 - CCNA_02129 0.69 +3.8 2,283,513 - CCNA_02129 0.69 -1.2 2,283,518 - CCNA_02129 0.69 -1.3 2,283,518 - CCNA_02129 0.69 +1.2 2,283,523 - CCNA_02129 0.70 +0.0 2,283,543 + CCNA_02129 0.72 +0.6 2,283,547 - CCNA_02129 0.72 +3.1 2,283,555 + CCNA_02129 0.73 +0.2 2,283,555 + CCNA_02129 0.73 -1.8 2,283,563 - CCNA_02129 0.73 -1.2 2,283,565 + CCNA_02129 0.74 -0.9 2,283,573 - CCNA_02129 0.74 -0.1 2,283,573 - CCNA_02129 0.74 +0.1 2,283,573 - CCNA_02129 0.74 -2.0 2,283,605 - CCNA_02129 0.77 +1.0 2,283,649 + CCNA_02129 0.81 -0.6 2,283,684 + CCNA_02129 0.84 +0.8 2,283,684 + CCNA_02129 0.84 -1.7 2,283,684 + CCNA_02129 0.84 -1.7 2,283,692 - CCNA_02129 0.85 +1.0 2,283,692 - CCNA_02129 0.85 +1.3 2,283,717 + CCNA_02129 0.87 +3.4 2,283,722 + CCNA_02129 0.87 -0.5 2,283,727 + CCNA_02129 0.88 -2.1 2,283,732 + CCNA_02129 0.88 +0.3 2,283,775 - -3.0 2,283,818 - -2.3 2,283,918 + +2.3 2,283,948 - -1.3 2,283,965 + -0.5 2,283,998 + -0.8 2,284,049 - +2.3 2,284,056 - -0.9 2,284,057 - +1.6 2,284,092 - CCNA_02130 0.11 +2.9 2,284,094 + CCNA_02130 0.12 -0.9 2,284,117 + CCNA_02130 0.13 -1.3 2,284,117 + CCNA_02130 0.13 -2.1 2,284,117 + CCNA_02130 0.13 +2.7 2,284,125 + CCNA_02130 0.14 +0.4 2,284,125 + CCNA_02130 0.14 -1.7 2,284,125 + CCNA_02130 0.14 -0.7 2,284,125 + CCNA_02130 0.14 -0.8 2,284,128 - CCNA_02130 0.14 -1.9 2,284,133 - CCNA_02130 0.14 +2.8 2,284,133 - CCNA_02130 0.14 -0.5 2,284,133 - CCNA_02130 0.14 +0.7 2,284,139 + CCNA_02130 0.15 -0.9 2,284,152 + CCNA_02130 0.16 +2.2 2,284,152 + CCNA_02130 0.16 -0.2 2,284,152 + CCNA_02130 0.16 +0.9 2,284,160 - CCNA_02130 0.16 +0.1 2,284,160 - CCNA_02130 0.16 +1.6 2,284,160 - CCNA_02130 0.16 +1.4 2,284,172 + CCNA_02130 0.17 -0.3 2,284,172 + CCNA_02130 0.17 +2.5 2,284,180 - CCNA_02130 0.18 -1.8 2,284,185 - CCNA_02130 0.18 +1.6 2,284,222 + CCNA_02130 0.20 -0.6 2,284,240 - CCNA_02130 0.22 -0.1 2,284,327 - CCNA_02130 0.28 +1.4 2,284,327 - CCNA_02130 0.28 +0.1 2,284,329 + CCNA_02130 0.28 -0.3 2,284,332 - CCNA_02130 0.28 +2.4 2,284,337 - CCNA_02130 0.29 +0.9 2,284,339 + CCNA_02130 0.29 -0.5 2,284,339 + CCNA_02130 0.29 +2.5 2,284,342 - CCNA_02130 0.29 +0.9 2,284,347 - CCNA_02130 0.29 +0.7 2,284,457 + CCNA_02130 0.37 -0.3 2,284,457 + CCNA_02130 0.37 -0.8 2,284,465 - CCNA_02130 0.37 -2.2 2,284,487 - CCNA_02130 0.39 +0.9 2,284,503 - CCNA_02130 0.40 +1.5 2,284,559 - CCNA_02130 0.44 -1.8 2,284,581 + CCNA_02130 0.46 +0.9 2,284,596 + CCNA_02130 0.47 +2.6 2,284,715 - CCNA_02130 0.55 -0.4 2,284,730 + CCNA_02130 0.56 +0.9 2,284,755 + CCNA_02130 0.58 -0.1 2,284,760 + CCNA_02130 0.58 -2.6 2,284,762 + CCNA_02130 0.58 +2.5 2,284,762 + CCNA_02130 0.58 -0.3 2,284,763 - CCNA_02130 0.58 +1.2 2,284,763 - CCNA_02130 0.58 +2.5 2,284,763 - CCNA_02130 0.58 +0.4 2,284,763 - CCNA_02130 0.58 +1.0 2,284,770 - CCNA_02130 0.59 +2.2 2,284,772 + CCNA_02130 0.59 +1.2 2,284,774 + CCNA_02130 0.59 -1.5 2,284,781 + CCNA_02130 0.60 +2.5 2,284,781 + CCNA_02130 0.60 +1.5 2,284,794 - CCNA_02130 0.60 +2.2 2,284,794 - CCNA_02130 0.60 +0.4 2,284,804 - CCNA_02130 0.61 -1.2 2,284,804 - CCNA_02130 0.61 -3.6 2,284,820 + CCNA_02130 0.62 +2.6 2,284,820 + CCNA_02130 0.62 -0.8 2,284,820 + CCNA_02130 0.62 -2.6 2,284,828 - CCNA_02130 0.63 +0.9 2,284,835 + CCNA_02130 0.63 -2.8 2,284,879 - CCNA_02130 0.66 -1.9 2,284,913 + CCNA_02130 0.69 +3.5 2,284,920 + CCNA_02130 0.69 +0.5 2,284,920 + CCNA_02130 0.69 +1.9 2,284,921 - CCNA_02130 0.69 -0.5 2,284,921 - CCNA_02130 0.69 -1.5 2,284,921 - CCNA_02130 0.69 -0.7 2,284,921 - CCNA_02130 0.69 +3.2 2,284,928 - CCNA_02130 0.70 -3.8 2,284,943 - CCNA_02130 0.71 +1.5 2,284,945 - CCNA_02130 0.71 -1.0 2,284,967 - CCNA_02130 0.73 +0.6 2,285,102 - CCNA_02130 0.82 +2.0 2,285,137 + CCNA_02130 0.84 +0.2 2,285,137 + CCNA_02130 0.84 -2.6 2,285,145 - CCNA_02130 0.85 -1.6 2,285,145 - CCNA_02130 0.85 +1.6 2,285,145 - CCNA_02130 0.85 -0.9 2,285,145 - CCNA_02130 0.85 +0.6 2,285,225 + +0.1 2,285,262 - +1.3 2,285,271 - +1.4 2,285,274 + -2.2 2,285,282 - -0.4 2,285,282 - +1.2 2,285,282 - -0.9 2,285,282 - -1.8 2,285,304 - +1.3 2,285,304 - +1.9 2,285,324 - +0.3 2,285,389 - -0.9 2,285,389 - +1.3 2,285,571 + -0.4 2,285,683 - CCNA_02131 0.12 -1.3 2,285,724 - CCNA_02131 0.14 -2.3 2,285,727 + CCNA_02131 0.14 +1.0 2,285,740 - CCNA_02131 0.15 -1.6 2,285,740 - CCNA_02131 0.15 -1.2 2,285,771 - CCNA_02131 0.16 -2.0 2,285,778 + CCNA_02131 0.16 -0.0 2,285,786 - CCNA_02131 0.17 -0.9 2,285,796 - CCNA_02131 0.17 +1.3 2,285,834 - CCNA_02131 0.18 +0.8 2,285,904 - CCNA_02131 0.21 -1.5 2,285,931 + CCNA_02131 0.22 -1.2 2,285,936 + CCNA_02131 0.23 -1.6 2,285,936 + CCNA_02131 0.23 +1.7 2,285,939 - CCNA_02131 0.23 -1.8 2,285,944 - CCNA_02131 0.23 -0.6 2,286,016 + CCNA_02131 0.26 -0.1 2,286,024 - CCNA_02131 0.26 -0.2 2,286,095 + CCNA_02131 0.29 +2.5 2,286,103 - CCNA_02131 0.29 +0.5 2,286,136 - CCNA_02131 0.31 +0.0 2,286,143 + CCNA_02131 0.31 -1.9 2,286,143 + CCNA_02131 0.31 -2.2 2,286,143 + CCNA_02131 0.31 -1.8 2,286,162 - CCNA_02131 0.32 -1.6 2,286,213 - CCNA_02131 0.34 +0.6 2,286,238 - CCNA_02131 0.35 -1.9 2,286,238 - -3.2 2,286,245 - CCNA_02131 0.35 +1.0 2,286,286 + CCNA_02131 0.37 +0.9 2,286,286 + CCNA_02131 0.37 -0.8
Or see this region's nucleotide sequence