Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02130

Experiment: PYE 30C survival rep2 28 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02129 and CCNA_02130 are separated by 64 nucleotidesCCNA_02130 and CCNA_02131 are separated by 19 nucleotides CCNA_02129: CCNA_02129 - acyl-CoA dehydrogenase, short-chain specific, at 2,282,731 to 2,283,864 _02129 CCNA_02130: CCNA_02130 - pyruvate kinase, at 2,283,929 to 2,285,359 _02130 CCNA_02131: CCNA_02131 - glucan 1,4-beta-glucosidase, at 2,285,379 to 2,287,844 _02131 Position (kb) 2283 2284 2285 2286Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2282.934 kb on - strand, within CCNA_02129at 2282.934 kb on - strand, within CCNA_02129at 2282.955 kb on - strand, within CCNA_02129at 2282.955 kb on - strand, within CCNA_02129at 2282.969 kb on + strand, within CCNA_02129at 2282.969 kb on + strand, within CCNA_02129at 2283.057 kb on + strand, within CCNA_02129at 2283.065 kb on - strand, within CCNA_02129at 2283.187 kb on + strand, within CCNA_02129at 2283.202 kb on - strand, within CCNA_02129at 2283.225 kb on + strand, within CCNA_02129at 2283.246 kb on - strand, within CCNA_02129at 2283.251 kb on - strand, within CCNA_02129at 2283.272 kb on - strand, within CCNA_02129at 2283.277 kb on + strand, within CCNA_02129at 2283.278 kb on - strand, within CCNA_02129at 2283.280 kb on - strand, within CCNA_02129at 2283.282 kb on + strand, within CCNA_02129at 2283.290 kb on - strand, within CCNA_02129at 2283.310 kb on - strand, within CCNA_02129at 2283.325 kb on - strand, within CCNA_02129at 2283.328 kb on + strand, within CCNA_02129at 2283.402 kb on - strand, within CCNA_02129at 2283.402 kb on - strand, within CCNA_02129at 2283.405 kb on + strand, within CCNA_02129at 2283.414 kb on + strand, within CCNA_02129at 2283.414 kb on + strand, within CCNA_02129at 2283.414 kb on + strand, within CCNA_02129at 2283.414 kb on + strand, within CCNA_02129at 2283.422 kb on - strand, within CCNA_02129at 2283.422 kb on - strand, within CCNA_02129at 2283.422 kb on - strand, within CCNA_02129at 2283.436 kb on + strand, within CCNA_02129at 2283.437 kb on - strand, within CCNA_02129at 2283.472 kb on + strand, within CCNA_02129at 2283.472 kb on - strand, within CCNA_02129at 2283.505 kb on + strand, within CCNA_02129at 2283.513 kb on - strand, within CCNA_02129at 2283.513 kb on - strand, within CCNA_02129at 2283.513 kb on - strand, within CCNA_02129at 2283.513 kb on - strand, within CCNA_02129at 2283.518 kb on - strand, within CCNA_02129at 2283.518 kb on - strand, within CCNA_02129at 2283.523 kb on - strand, within CCNA_02129at 2283.543 kb on + strand, within CCNA_02129at 2283.547 kb on - strand, within CCNA_02129at 2283.555 kb on + strand, within CCNA_02129at 2283.555 kb on + strand, within CCNA_02129at 2283.563 kb on - strand, within CCNA_02129at 2283.565 kb on + strand, within CCNA_02129at 2283.573 kb on - strand, within CCNA_02129at 2283.573 kb on - strand, within CCNA_02129at 2283.573 kb on - strand, within CCNA_02129at 2283.605 kb on - strand, within CCNA_02129at 2283.649 kb on + strand, within CCNA_02129at 2283.684 kb on + strand, within CCNA_02129at 2283.684 kb on + strand, within CCNA_02129at 2283.684 kb on + strand, within CCNA_02129at 2283.692 kb on - strand, within CCNA_02129at 2283.692 kb on - strand, within CCNA_02129at 2283.717 kb on + strand, within CCNA_02129at 2283.722 kb on + strand, within CCNA_02129at 2283.727 kb on + strand, within CCNA_02129at 2283.732 kb on + strand, within CCNA_02129at 2283.775 kb on - strandat 2283.818 kb on - strandat 2283.918 kb on + strandat 2283.948 kb on - strandat 2283.965 kb on + strandat 2283.998 kb on + strandat 2284.049 kb on - strandat 2284.056 kb on - strandat 2284.057 kb on - strandat 2284.092 kb on - strand, within CCNA_02130at 2284.094 kb on + strand, within CCNA_02130at 2284.117 kb on + strand, within CCNA_02130at 2284.117 kb on + strand, within CCNA_02130at 2284.117 kb on + strand, within CCNA_02130at 2284.125 kb on + strand, within CCNA_02130at 2284.125 kb on + strand, within CCNA_02130at 2284.125 kb on + strand, within CCNA_02130at 2284.125 kb on + strand, within CCNA_02130at 2284.128 kb on - strand, within CCNA_02130at 2284.133 kb on - strand, within CCNA_02130at 2284.133 kb on - strand, within CCNA_02130at 2284.133 kb on - strand, within CCNA_02130at 2284.139 kb on + strand, within CCNA_02130at 2284.152 kb on + strand, within CCNA_02130at 2284.152 kb on + strand, within CCNA_02130at 2284.152 kb on + strand, within CCNA_02130at 2284.160 kb on - strand, within CCNA_02130at 2284.160 kb on - strand, within CCNA_02130at 2284.160 kb on - strand, within CCNA_02130at 2284.172 kb on + strand, within CCNA_02130at 2284.172 kb on + strand, within CCNA_02130at 2284.180 kb on - strand, within CCNA_02130at 2284.185 kb on - strand, within CCNA_02130at 2284.222 kb on + strand, within CCNA_02130at 2284.240 kb on - strand, within CCNA_02130at 2284.327 kb on - strand, within CCNA_02130at 2284.327 kb on - strand, within CCNA_02130at 2284.329 kb on + strand, within CCNA_02130at 2284.332 kb on - strand, within CCNA_02130at 2284.337 kb on - strand, within CCNA_02130at 2284.339 kb on + strand, within CCNA_02130at 2284.339 kb on + strand, within CCNA_02130at 2284.342 kb on - strand, within CCNA_02130at 2284.347 kb on - strand, within CCNA_02130at 2284.457 kb on + strand, within CCNA_02130at 2284.457 kb on + strand, within CCNA_02130at 2284.465 kb on - strand, within CCNA_02130at 2284.487 kb on - strand, within CCNA_02130at 2284.503 kb on - strand, within CCNA_02130at 2284.559 kb on - strand, within CCNA_02130at 2284.581 kb on + strand, within CCNA_02130at 2284.596 kb on + strand, within CCNA_02130at 2284.715 kb on - strand, within CCNA_02130at 2284.730 kb on + strand, within CCNA_02130at 2284.755 kb on + strand, within CCNA_02130at 2284.760 kb on + strand, within CCNA_02130at 2284.762 kb on + strand, within CCNA_02130at 2284.762 kb on + strand, within CCNA_02130at 2284.763 kb on - strand, within CCNA_02130at 2284.763 kb on - strand, within CCNA_02130at 2284.763 kb on - strand, within CCNA_02130at 2284.763 kb on - strand, within CCNA_02130at 2284.770 kb on - strand, within CCNA_02130at 2284.772 kb on + strand, within CCNA_02130at 2284.774 kb on + strand, within CCNA_02130at 2284.781 kb on + strand, within CCNA_02130at 2284.781 kb on + strand, within CCNA_02130at 2284.794 kb on - strand, within CCNA_02130at 2284.794 kb on - strand, within CCNA_02130at 2284.804 kb on - strand, within CCNA_02130at 2284.804 kb on - strand, within CCNA_02130at 2284.820 kb on + strand, within CCNA_02130at 2284.820 kb on + strand, within CCNA_02130at 2284.820 kb on + strand, within CCNA_02130at 2284.828 kb on - strand, within CCNA_02130at 2284.835 kb on + strand, within CCNA_02130at 2284.879 kb on - strand, within CCNA_02130at 2284.913 kb on + strand, within CCNA_02130at 2284.920 kb on + strand, within CCNA_02130at 2284.920 kb on + strand, within CCNA_02130at 2284.921 kb on - strand, within CCNA_02130at 2284.921 kb on - strand, within CCNA_02130at 2284.921 kb on - strand, within CCNA_02130at 2284.921 kb on - strand, within CCNA_02130at 2284.928 kb on - strand, within CCNA_02130at 2284.943 kb on - strand, within CCNA_02130at 2284.945 kb on - strand, within CCNA_02130at 2284.967 kb on - strand, within CCNA_02130at 2285.102 kb on - strand, within CCNA_02130at 2285.137 kb on + strand, within CCNA_02130at 2285.137 kb on + strand, within CCNA_02130at 2285.145 kb on - strand, within CCNA_02130at 2285.145 kb on - strand, within CCNA_02130at 2285.145 kb on - strand, within CCNA_02130at 2285.145 kb on - strand, within CCNA_02130at 2285.225 kb on + strandat 2285.262 kb on - strandat 2285.271 kb on - strandat 2285.274 kb on + strandat 2285.282 kb on - strandat 2285.282 kb on - strandat 2285.282 kb on - strandat 2285.282 kb on - strandat 2285.304 kb on - strandat 2285.304 kb on - strandat 2285.324 kb on - strandat 2285.389 kb on - strandat 2285.389 kb on - strandat 2285.571 kb on + strandat 2285.683 kb on - strand, within CCNA_02131at 2285.724 kb on - strand, within CCNA_02131at 2285.727 kb on + strand, within CCNA_02131at 2285.740 kb on - strand, within CCNA_02131at 2285.740 kb on - strand, within CCNA_02131at 2285.771 kb on - strand, within CCNA_02131at 2285.778 kb on + strand, within CCNA_02131at 2285.786 kb on - strand, within CCNA_02131at 2285.796 kb on - strand, within CCNA_02131at 2285.834 kb on - strand, within CCNA_02131at 2285.904 kb on - strand, within CCNA_02131at 2285.931 kb on + strand, within CCNA_02131at 2285.936 kb on + strand, within CCNA_02131at 2285.936 kb on + strand, within CCNA_02131at 2285.939 kb on - strand, within CCNA_02131at 2285.944 kb on - strand, within CCNA_02131at 2286.016 kb on + strand, within CCNA_02131at 2286.024 kb on - strand, within CCNA_02131at 2286.095 kb on + strand, within CCNA_02131at 2286.103 kb on - strand, within CCNA_02131at 2286.136 kb on - strand, within CCNA_02131at 2286.143 kb on + strand, within CCNA_02131at 2286.143 kb on + strand, within CCNA_02131at 2286.143 kb on + strand, within CCNA_02131at 2286.162 kb on - strand, within CCNA_02131at 2286.213 kb on - strand, within CCNA_02131at 2286.238 kb on - strand, within CCNA_02131at 2286.238 kb on - strandat 2286.245 kb on - strand, within CCNA_02131at 2286.286 kb on + strand, within CCNA_02131at 2286.286 kb on + strand, within CCNA_02131

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days
remove
2,282,934 - CCNA_02129 0.18 -0.8
2,282,934 - CCNA_02129 0.18 +0.3
2,282,955 - CCNA_02129 0.20 -3.2
2,282,955 - CCNA_02129 0.20 -1.0
2,282,969 + CCNA_02129 0.21 -0.5
2,282,969 + CCNA_02129 0.21 -1.1
2,283,057 + CCNA_02129 0.29 -1.9
2,283,065 - CCNA_02129 0.29 -2.3
2,283,187 + CCNA_02129 0.40 -1.6
2,283,202 - CCNA_02129 0.42 -1.9
2,283,225 + CCNA_02129 0.44 +1.5
2,283,246 - CCNA_02129 0.45 -0.4
2,283,251 - CCNA_02129 0.46 -0.6
2,283,272 - CCNA_02129 0.48 -0.3
2,283,277 + CCNA_02129 0.48 -0.3
2,283,278 - CCNA_02129 0.48 -1.8
2,283,280 - CCNA_02129 0.48 -0.4
2,283,282 + CCNA_02129 0.49 +2.2
2,283,290 - CCNA_02129 0.49 +0.6
2,283,310 - CCNA_02129 0.51 -2.7
2,283,325 - CCNA_02129 0.52 -0.5
2,283,328 + CCNA_02129 0.53 -1.0
2,283,402 - CCNA_02129 0.59 -2.2
2,283,402 - CCNA_02129 0.59 -0.1
2,283,405 + CCNA_02129 0.59 -1.5
2,283,414 + CCNA_02129 0.60 +3.3
2,283,414 + CCNA_02129 0.60 +1.3
2,283,414 + CCNA_02129 0.60 +1.8
2,283,414 + CCNA_02129 0.60 -1.7
2,283,422 - CCNA_02129 0.61 -0.0
2,283,422 - CCNA_02129 0.61 +0.1
2,283,422 - CCNA_02129 0.61 +1.5
2,283,436 + CCNA_02129 0.62 -0.3
2,283,437 - CCNA_02129 0.62 -2.8
2,283,472 + CCNA_02129 0.65 -2.3
2,283,472 - CCNA_02129 0.65 -0.8
2,283,505 + CCNA_02129 0.68 +2.6
2,283,513 - CCNA_02129 0.69 +2.3
2,283,513 - CCNA_02129 0.69 -0.0
2,283,513 - CCNA_02129 0.69 +3.8
2,283,513 - CCNA_02129 0.69 -1.2
2,283,518 - CCNA_02129 0.69 -1.3
2,283,518 - CCNA_02129 0.69 +1.2
2,283,523 - CCNA_02129 0.70 +0.0
2,283,543 + CCNA_02129 0.72 +0.6
2,283,547 - CCNA_02129 0.72 +3.1
2,283,555 + CCNA_02129 0.73 +0.2
2,283,555 + CCNA_02129 0.73 -1.8
2,283,563 - CCNA_02129 0.73 -1.2
2,283,565 + CCNA_02129 0.74 -0.9
2,283,573 - CCNA_02129 0.74 -0.1
2,283,573 - CCNA_02129 0.74 +0.1
2,283,573 - CCNA_02129 0.74 -2.0
2,283,605 - CCNA_02129 0.77 +1.0
2,283,649 + CCNA_02129 0.81 -0.6
2,283,684 + CCNA_02129 0.84 +0.8
2,283,684 + CCNA_02129 0.84 -1.7
2,283,684 + CCNA_02129 0.84 -1.7
2,283,692 - CCNA_02129 0.85 +1.0
2,283,692 - CCNA_02129 0.85 +1.3
2,283,717 + CCNA_02129 0.87 +3.4
2,283,722 + CCNA_02129 0.87 -0.5
2,283,727 + CCNA_02129 0.88 -2.1
2,283,732 + CCNA_02129 0.88 +0.3
2,283,775 - -3.0
2,283,818 - -2.3
2,283,918 + +2.3
2,283,948 - -1.3
2,283,965 + -0.5
2,283,998 + -0.8
2,284,049 - +2.3
2,284,056 - -0.9
2,284,057 - +1.6
2,284,092 - CCNA_02130 0.11 +2.9
2,284,094 + CCNA_02130 0.12 -0.9
2,284,117 + CCNA_02130 0.13 -1.3
2,284,117 + CCNA_02130 0.13 -2.1
2,284,117 + CCNA_02130 0.13 +2.7
2,284,125 + CCNA_02130 0.14 +0.4
2,284,125 + CCNA_02130 0.14 -1.7
2,284,125 + CCNA_02130 0.14 -0.7
2,284,125 + CCNA_02130 0.14 -0.8
2,284,128 - CCNA_02130 0.14 -1.9
2,284,133 - CCNA_02130 0.14 +2.8
2,284,133 - CCNA_02130 0.14 -0.5
2,284,133 - CCNA_02130 0.14 +0.7
2,284,139 + CCNA_02130 0.15 -0.9
2,284,152 + CCNA_02130 0.16 +2.2
2,284,152 + CCNA_02130 0.16 -0.2
2,284,152 + CCNA_02130 0.16 +0.9
2,284,160 - CCNA_02130 0.16 +0.1
2,284,160 - CCNA_02130 0.16 +1.6
2,284,160 - CCNA_02130 0.16 +1.4
2,284,172 + CCNA_02130 0.17 -0.3
2,284,172 + CCNA_02130 0.17 +2.5
2,284,180 - CCNA_02130 0.18 -1.8
2,284,185 - CCNA_02130 0.18 +1.6
2,284,222 + CCNA_02130 0.20 -0.6
2,284,240 - CCNA_02130 0.22 -0.1
2,284,327 - CCNA_02130 0.28 +1.4
2,284,327 - CCNA_02130 0.28 +0.1
2,284,329 + CCNA_02130 0.28 -0.3
2,284,332 - CCNA_02130 0.28 +2.4
2,284,337 - CCNA_02130 0.29 +0.9
2,284,339 + CCNA_02130 0.29 -0.5
2,284,339 + CCNA_02130 0.29 +2.5
2,284,342 - CCNA_02130 0.29 +0.9
2,284,347 - CCNA_02130 0.29 +0.7
2,284,457 + CCNA_02130 0.37 -0.3
2,284,457 + CCNA_02130 0.37 -0.8
2,284,465 - CCNA_02130 0.37 -2.2
2,284,487 - CCNA_02130 0.39 +0.9
2,284,503 - CCNA_02130 0.40 +1.5
2,284,559 - CCNA_02130 0.44 -1.8
2,284,581 + CCNA_02130 0.46 +0.9
2,284,596 + CCNA_02130 0.47 +2.6
2,284,715 - CCNA_02130 0.55 -0.4
2,284,730 + CCNA_02130 0.56 +0.9
2,284,755 + CCNA_02130 0.58 -0.1
2,284,760 + CCNA_02130 0.58 -2.6
2,284,762 + CCNA_02130 0.58 +2.5
2,284,762 + CCNA_02130 0.58 -0.3
2,284,763 - CCNA_02130 0.58 +1.2
2,284,763 - CCNA_02130 0.58 +2.5
2,284,763 - CCNA_02130 0.58 +0.4
2,284,763 - CCNA_02130 0.58 +1.0
2,284,770 - CCNA_02130 0.59 +2.2
2,284,772 + CCNA_02130 0.59 +1.2
2,284,774 + CCNA_02130 0.59 -1.5
2,284,781 + CCNA_02130 0.60 +2.5
2,284,781 + CCNA_02130 0.60 +1.5
2,284,794 - CCNA_02130 0.60 +2.2
2,284,794 - CCNA_02130 0.60 +0.4
2,284,804 - CCNA_02130 0.61 -1.2
2,284,804 - CCNA_02130 0.61 -3.6
2,284,820 + CCNA_02130 0.62 +2.6
2,284,820 + CCNA_02130 0.62 -0.8
2,284,820 + CCNA_02130 0.62 -2.6
2,284,828 - CCNA_02130 0.63 +0.9
2,284,835 + CCNA_02130 0.63 -2.8
2,284,879 - CCNA_02130 0.66 -1.9
2,284,913 + CCNA_02130 0.69 +3.5
2,284,920 + CCNA_02130 0.69 +0.5
2,284,920 + CCNA_02130 0.69 +1.9
2,284,921 - CCNA_02130 0.69 -0.5
2,284,921 - CCNA_02130 0.69 -1.5
2,284,921 - CCNA_02130 0.69 -0.7
2,284,921 - CCNA_02130 0.69 +3.2
2,284,928 - CCNA_02130 0.70 -3.8
2,284,943 - CCNA_02130 0.71 +1.5
2,284,945 - CCNA_02130 0.71 -1.0
2,284,967 - CCNA_02130 0.73 +0.6
2,285,102 - CCNA_02130 0.82 +2.0
2,285,137 + CCNA_02130 0.84 +0.2
2,285,137 + CCNA_02130 0.84 -2.6
2,285,145 - CCNA_02130 0.85 -1.6
2,285,145 - CCNA_02130 0.85 +1.6
2,285,145 - CCNA_02130 0.85 -0.9
2,285,145 - CCNA_02130 0.85 +0.6
2,285,225 + +0.1
2,285,262 - +1.3
2,285,271 - +1.4
2,285,274 + -2.2
2,285,282 - -0.4
2,285,282 - +1.2
2,285,282 - -0.9
2,285,282 - -1.8
2,285,304 - +1.3
2,285,304 - +1.9
2,285,324 - +0.3
2,285,389 - -0.9
2,285,389 - +1.3
2,285,571 + -0.4
2,285,683 - CCNA_02131 0.12 -1.3
2,285,724 - CCNA_02131 0.14 -2.3
2,285,727 + CCNA_02131 0.14 +1.0
2,285,740 - CCNA_02131 0.15 -1.6
2,285,740 - CCNA_02131 0.15 -1.2
2,285,771 - CCNA_02131 0.16 -2.0
2,285,778 + CCNA_02131 0.16 -0.0
2,285,786 - CCNA_02131 0.17 -0.9
2,285,796 - CCNA_02131 0.17 +1.3
2,285,834 - CCNA_02131 0.18 +0.8
2,285,904 - CCNA_02131 0.21 -1.5
2,285,931 + CCNA_02131 0.22 -1.2
2,285,936 + CCNA_02131 0.23 -1.6
2,285,936 + CCNA_02131 0.23 +1.7
2,285,939 - CCNA_02131 0.23 -1.8
2,285,944 - CCNA_02131 0.23 -0.6
2,286,016 + CCNA_02131 0.26 -0.1
2,286,024 - CCNA_02131 0.26 -0.2
2,286,095 + CCNA_02131 0.29 +2.5
2,286,103 - CCNA_02131 0.29 +0.5
2,286,136 - CCNA_02131 0.31 +0.0
2,286,143 + CCNA_02131 0.31 -1.9
2,286,143 + CCNA_02131 0.31 -2.2
2,286,143 + CCNA_02131 0.31 -1.8
2,286,162 - CCNA_02131 0.32 -1.6
2,286,213 - CCNA_02131 0.34 +0.6
2,286,238 - CCNA_02131 0.35 -1.9
2,286,238 - -3.2
2,286,245 - CCNA_02131 0.35 +1.0
2,286,286 + CCNA_02131 0.37 +0.9
2,286,286 + CCNA_02131 0.37 -0.8

Or see this region's nucleotide sequence