Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01858

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
1,989,888	+		CCNA_01857	0.19	-1.6
1,989,916	+		CCNA_01857	0.21	-0.9
1,989,924	-		CCNA_01857	0.22	-0.3
1,989,924	-		CCNA_01857	0.22	-1.6
1,989,932	+		CCNA_01857	0.22	+1.0
1,989,942	+		CCNA_01857	0.23	+0.0
1,989,959	+		CCNA_01857	0.24	+1.2
1,989,965	+		CCNA_01857	0.25	+0.5
1,989,965	+		CCNA_01857	0.25	-0.2
1,989,973	-		CCNA_01857	0.25	+0.2
1,989,973	-		CCNA_01857	0.25	-0.9
1,989,986	+		CCNA_01857	0.26	+2.6
1,989,995	+		CCNA_01857	0.27	-2.7
1,990,000	+		CCNA_01857	0.28	+0.3
1,990,001	+		CCNA_01857	0.28	+1.3
1,990,310	+		CCNA_01857	0.52	-0.3
1,990,310	+		CCNA_01857	0.52	-0.7
1,990,318	-		CCNA_01857	0.53	-1.0
1,990,325	+		CCNA_01857	0.53	+3.0
1,990,363	-		CCNA_01857	0.56	-1.1
1,990,376	+		CCNA_01857	0.58	+0.3
1,990,376	+		CCNA_01857	0.58	-0.8
1,990,376	+		CCNA_01857	0.58	+1.3
1,990,376	+		CCNA_01857	0.58	-0.9
1,990,384	-		CCNA_01857	0.58	-2.3
1,990,384	-		CCNA_01857	0.58	+1.8
1,990,384	-		CCNA_01857	0.58	+0.8
1,990,448	+		CCNA_01857	0.63	+1.6
1,990,456	-		CCNA_01857	0.64	+2.0
1,990,456	-		CCNA_01857	0.64	+2.8
1,990,456	-		CCNA_01857	0.64	-0.0
1,990,477	-		CCNA_01857	0.66	-0.0
1,990,478	+		CCNA_01857	0.66	+0.9
1,990,498	-		CCNA_01857	0.67	+2.8
1,990,500	-		CCNA_01857	0.67	-1.9
1,990,533	+		CCNA_01857	0.70	+1.1
1,990,551	+		CCNA_01857	0.71	+0.7
1,990,605	-		CCNA_01857	0.76	-0.7
1,990,612	-		CCNA_01857	0.76	+0.4
1,990,633	+		CCNA_01857	0.78	+1.8
1,990,718	-		CCNA_01857	0.85	-0.5
1,990,740	+		CCNA_01857	0.86	+1.3
1,990,742	+		CCNA_01857	0.87	+1.8
1,990,756	+		CCNA_01857	0.88	+1.6
1,990,823	+				+0.0
1,990,835	+				-0.9
1,990,876	-				+4.1
1,990,903	+				+1.7
1,990,903	+				+1.5
1,990,903	+				+3.0
1,990,903	+				-0.3
1,990,903	+				+0.4
1,990,911	-				-2.4
1,990,975	+		CCNA_01858	0.12	+2.0
1,990,983	+		CCNA_01858	0.13	-0.1
1,990,990	+		CCNA_01858	0.14	+0.4
1,991,025	+		CCNA_01858	0.17	+1.4
1,991,075	+		CCNA_01858	0.23	+1.1
1,991,075	+		CCNA_01858	0.23	-1.4
1,991,075	+		CCNA_01858	0.23	+1.4
1,991,137	+		CCNA_01858	0.30	+1.8
1,991,145	-		CCNA_01858	0.31	-1.0
1,991,183	+		CCNA_01858	0.35	+2.7
1,991,211	+		CCNA_01858	0.38	+1.9
1,991,279	-		CCNA_01858	0.46	-0.9
1,991,279	-		CCNA_01858	0.46	-0.9
1,991,296	+		CCNA_01858	0.48	-2.6
1,991,304	-		CCNA_01858	0.48	-0.4
1,991,353	+		CCNA_01858	0.54	+0.5
1,991,353	+		CCNA_01858	0.54	-0.6
1,991,417	+		CCNA_01858	0.61	+0.4
1,991,425	-		CCNA_01858	0.62	+0.8
1,991,461	+		CCNA_01858	0.66	+0.4
1,991,461	+		CCNA_01858	0.66	-1.7
1,991,469	-		CCNA_01858	0.67	+2.8
1,991,469	-		CCNA_01858	0.67	-1.5
1,991,471	+		CCNA_01858	0.67	+2.3
1,991,509	-		CCNA_01858	0.71	-2.3
1,991,549	-		CCNA_01858	0.76	+2.8
1,991,570	+		CCNA_01858	0.78	+1.4
1,991,570	+		CCNA_01858	0.78	+1.8
1,991,570	+		CCNA_01858	0.78	+2.0
1,991,580	+		CCNA_01858	0.79	-0.3
1,991,583	-		CCNA_01858	0.79	-0.8
1,991,613	+		CCNA_01858	0.83	+1.5
1,991,613	+		CCNA_01858	0.83	+2.6
1,991,613	+		CCNA_01858	0.83	-1.3
1,991,613	+		CCNA_01858	0.83	-0.7
1,991,613	+		CCNA_01858	0.83	+1.9
1,991,613	+		CCNA_01858	0.83	+3.1
1,991,613	+		CCNA_01858	0.83	+2.5
1,991,621	-		CCNA_01858	0.83	-1.3
1,991,646	+		CCNA_01858	0.86	+0.1
1,991,656	+		CCNA_01858	0.87	+0.6
1,991,656	+		CCNA_01858	0.87	-0.7
1,991,682	+				-0.2
1,991,682	+				-2.3
1,991,682	+				+0.1
1,991,682	+				+1.9
1,991,682	+				+1.9
1,991,682	+				+1.7
1,991,682	+				+2.2
1,991,690	-				+0.2
1,991,753	+				+2.4
1,991,754	+				+3.3
1,991,762	-				+1.2
1,991,762	-				-0.7
1,991,762	-				-1.7
1,991,763	+				+1.8
1,991,763	+				-1.9
1,991,771	-				+2.8
1,991,772	-				-0.2
1,991,776	+				-0.3
1,991,794	+				+1.1
1,991,842	-				-1.1
1,991,846	+				+2.1
1,991,846	+				+2.2
1,991,890	+				-1.5
1,991,900	+				+0.3
1,991,915	+				+0.4
1,991,921	+				+3.2
1,991,929	-				-0.9
1,991,938	+				-0.4
1,991,970	+				+0.5
1,991,975	+				-0.9
1,991,975	+				+2.6
1,991,975	+				+0.2
1,991,975	+				-0.1
1,991,983	-				+4.4
1,991,983	-				-2.0
1,991,983	-				-0.7
1,991,983	-				+0.4
1,991,983	-				-1.7
1,991,983	-				+0.4
1,992,012	+				-0.8
1,992,052	+				+1.1
1,992,078	+		CCNA_01859	0.11	-2.3
1,992,078	+		CCNA_01859	0.11	+3.9
1,992,086	-		CCNA_01859	0.12	-0.2
1,992,097	+		CCNA_01859	0.12	+0.4
1,992,117	-		CCNA_01859	0.13	+2.8
1,992,128	-		CCNA_01859	0.14	-0.6
1,992,181	+		CCNA_01859	0.16	+0.5
1,992,184	-		CCNA_01859	0.16	+2.8
1,992,184	-		CCNA_01859	0.16	+1.8
1,992,197	-		CCNA_01859	0.17	-1.5
1,992,202	+		CCNA_01859	0.17	+1.5
1,992,310	+		CCNA_01859	0.23	+0.7
1,992,310	+		CCNA_01859	0.23	+2.1
1,992,318	-		CCNA_01859	0.23	-0.4
1,992,318	-		CCNA_01859	0.23	+1.2
1,992,457	+		CCNA_01859	0.30	+1.0
1,992,457	+		CCNA_01859	0.30	+0.9
1,992,465	-		CCNA_01859	0.30	-2.5
1,992,516	+		CCNA_01859	0.33	-0.5
1,992,524	-		CCNA_01859	0.33	-2.0
1,992,567	-		CCNA_01859	0.35	-2.0
1,992,631	+		CCNA_01859	0.38	+1.8
1,992,680	-		CCNA_01859	0.41	+0.2
1,992,684	+		CCNA_01859	0.41	-2.4
1,992,690	+		CCNA_01859	0.41	+0.3
1,992,695	+		CCNA_01859	0.41	+3.3
1,992,700	+		CCNA_01859	0.42	+3.3
1,992,734	+		CCNA_01859	0.43	+0.9
1,992,734	+		CCNA_01859	0.43	+0.1
1,992,734	+		CCNA_01859	0.43	+1.1
1,992,734	+		CCNA_01859	0.43	-0.7
1,992,734	+		CCNA_01859	0.43	+0.8
1,992,734	+		CCNA_01859	0.43	+0.5
1,992,734	+		CCNA_01859	0.43	-3.1
1,992,734	+		CCNA_01859	0.43	+2.4
1,992,734	+		CCNA_01859	0.43	+0.4
1,992,734	+		CCNA_01859	0.43	+0.4
1,992,742	-		CCNA_01859	0.44	+2.8
1,992,742	-		CCNA_01859	0.44	+0.8
1,992,747	-		CCNA_01859	0.44	-0.4
1,992,747	-		CCNA_01859	0.44	+1.2
1,992,757	-		CCNA_01859	0.44	-0.7
1,992,768	-		CCNA_01859	0.45	-1.6