Experiment: PYE 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01853 and CCNA_01854 are separated by 144 nucleotides CCNA_01854 and CCNA_01855 are separated by 129 nucleotides CCNA_01855 and CCNA_01856 overlap by 58 nucleotides
CCNA_01853: CCNA_01853 - hypothetical protein, at 1,985,425 to 1,985,829
_01853
CCNA_01854: CCNA_01854 - GntR-family transcriptional regulator, at 1,985,974 to 1,986,639
_01854
CCNA_01855: CCNA_01855 - iron/manganese superoxide dismutase, at 1,986,769 to 1,987,485
_01855
CCNA_01856: CCNA_01856 - ferrichrome-iron receptor, at 1,987,428 to 1,989,626
_01856
Position (kb)
1986
1987
1988 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1985.870 kb on + strand at 1985.870 kb on + strand at 1985.884 kb on + strand at 1985.897 kb on - strand at 1985.922 kb on - strand at 1985.922 kb on - strand at 1985.922 kb on - strand at 1985.938 kb on + strand at 1985.946 kb on - strand at 1985.946 kb on - strand at 1985.976 kb on + strand at 1985.986 kb on + strand at 1985.994 kb on - strand at 1986.061 kb on + strand at 1986.061 kb on + strand, within CCNA_01854 at 1986.083 kb on + strand, within CCNA_01854 at 1986.146 kb on - strand, within CCNA_01854 at 1986.206 kb on + strand, within CCNA_01854 at 1986.223 kb on - strand, within CCNA_01854 at 1986.265 kb on + strand, within CCNA_01854 at 1986.273 kb on - strand, within CCNA_01854 at 1986.277 kb on + strand, within CCNA_01854 at 1986.284 kb on - strand, within CCNA_01854 at 1986.285 kb on - strand, within CCNA_01854 at 1986.363 kb on + strand, within CCNA_01854 at 1986.391 kb on + strand, within CCNA_01854 at 1986.392 kb on + strand, within CCNA_01854 at 1986.415 kb on + strand, within CCNA_01854 at 1986.415 kb on + strand, within CCNA_01854 at 1986.500 kb on + strand, within CCNA_01854 at 1986.518 kb on - strand, within CCNA_01854 at 1986.520 kb on + strand, within CCNA_01854 at 1986.542 kb on + strand, within CCNA_01854 at 1986.567 kb on + strand, within CCNA_01854 at 1986.646 kb on + strand at 1986.646 kb on + strand at 1986.646 kb on + strand at 1986.654 kb on - strand at 1986.654 kb on - strand at 1986.654 kb on - strand at 1986.656 kb on + strand at 1986.656 kb on + strand at 1986.656 kb on + strand at 1986.656 kb on + strand at 1986.656 kb on + strand at 1986.664 kb on - strand at 1986.664 kb on - strand at 1986.664 kb on - strand at 1986.717 kb on + strand at 1986.717 kb on + strand at 1986.751 kb on + strand at 1986.839 kb on + strand at 1986.857 kb on + strand, within CCNA_01855 at 1986.894 kb on + strand, within CCNA_01855 at 1986.897 kb on - strand, within CCNA_01855 at 1986.924 kb on + strand, within CCNA_01855 at 1986.964 kb on + strand, within CCNA_01855 at 1986.972 kb on - strand, within CCNA_01855 at 1986.972 kb on - strand, within CCNA_01855 at 1986.974 kb on + strand, within CCNA_01855 at 1986.982 kb on + strand, within CCNA_01855 at 1987.028 kb on - strand, within CCNA_01855 at 1987.107 kb on - strand, within CCNA_01855 at 1987.108 kb on + strand, within CCNA_01855 at 1987.108 kb on + strand, within CCNA_01855 at 1987.118 kb on - strand, within CCNA_01855 at 1987.130 kb on + strand, within CCNA_01855 at 1987.182 kb on + strand, within CCNA_01855 at 1987.201 kb on - strand, within CCNA_01855 at 1987.243 kb on + strand, within CCNA_01855 at 1987.243 kb on + strand, within CCNA_01855 at 1987.282 kb on - strand, within CCNA_01855 at 1987.335 kb on + strand, within CCNA_01855 at 1987.335 kb on + strand, within CCNA_01855 at 1987.335 kb on + strand, within CCNA_01855 at 1987.335 kb on + strand, within CCNA_01855 at 1987.343 kb on - strand, within CCNA_01855 at 1987.356 kb on + strand, within CCNA_01855 at 1987.393 kb on + strand, within CCNA_01855 at 1987.393 kb on - strand, within CCNA_01855 at 1987.396 kb on - strand, within CCNA_01855 at 1987.441 kb on + strand at 1987.452 kb on + strand at 1987.464 kb on + strand at 1987.472 kb on - strand at 1987.472 kb on - strand at 1987.533 kb on + strand at 1987.533 kb on + strand at 1987.605 kb on - strand at 1987.613 kb on + strand at 1987.656 kb on + strand, within CCNA_01856 at 1987.690 kb on + strand, within CCNA_01856 at 1987.773 kb on + strand, within CCNA_01856 at 1987.773 kb on + strand, within CCNA_01856 at 1987.775 kb on + strand, within CCNA_01856 at 1987.781 kb on - strand, within CCNA_01856 at 1987.796 kb on + strand, within CCNA_01856 at 1987.804 kb on - strand, within CCNA_01856 at 1987.810 kb on + strand, within CCNA_01856 at 1987.810 kb on - strand, within CCNA_01856 at 1987.815 kb on + strand, within CCNA_01856 at 1987.815 kb on + strand, within CCNA_01856 at 1987.820 kb on + strand, within CCNA_01856 at 1987.823 kb on - strand, within CCNA_01856 at 1987.825 kb on + strand, within CCNA_01856 at 1987.825 kb on + strand, within CCNA_01856 at 1987.833 kb on - strand, within CCNA_01856 at 1987.833 kb on - strand, within CCNA_01856 at 1987.833 kb on - strand, within CCNA_01856 at 1987.874 kb on - strand, within CCNA_01856 at 1987.882 kb on + strand, within CCNA_01856 at 1987.930 kb on + strand, within CCNA_01856 at 1987.930 kb on + strand, within CCNA_01856 at 1987.935 kb on + strand, within CCNA_01856 at 1987.940 kb on + strand, within CCNA_01856 at 1987.940 kb on + strand, within CCNA_01856 at 1987.948 kb on - strand, within CCNA_01856 at 1987.948 kb on - strand, within CCNA_01856 at 1988.032 kb on - strand, within CCNA_01856 at 1988.068 kb on + strand, within CCNA_01856 at 1988.068 kb on + strand at 1988.182 kb on + strand, within CCNA_01856 at 1988.255 kb on - strand, within CCNA_01856 at 1988.284 kb on + strand, within CCNA_01856 at 1988.284 kb on + strand, within CCNA_01856 at 1988.292 kb on - strand, within CCNA_01856 at 1988.292 kb on - strand, within CCNA_01856 at 1988.381 kb on - strand, within CCNA_01856 at 1988.390 kb on - strand, within CCNA_01856 at 1988.445 kb on + strand, within CCNA_01856 at 1988.453 kb on - strand, within CCNA_01856
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days remove 1,985,870 + -1.0 1,985,870 + -1.5 1,985,884 + +2.2 1,985,897 - -0.2 1,985,922 - +2.8 1,985,922 - -1.3 1,985,922 - +1.8 1,985,938 + -0.0 1,985,946 - +0.2 1,985,946 - +2.8 1,985,976 + +2.8 1,985,986 + +1.2 1,985,994 - -1.4 1,986,061 + +2.8 1,986,061 + CCNA_01854 0.13 -0.6 1,986,083 + CCNA_01854 0.16 -0.9 1,986,146 - CCNA_01854 0.26 -0.7 1,986,206 + CCNA_01854 0.35 -0.4 1,986,223 - CCNA_01854 0.37 -1.1 1,986,265 + CCNA_01854 0.44 -1.4 1,986,273 - CCNA_01854 0.45 +2.3 1,986,277 + CCNA_01854 0.45 -0.0 1,986,284 - CCNA_01854 0.47 +0.3 1,986,285 - CCNA_01854 0.47 +0.4 1,986,363 + CCNA_01854 0.58 -2.5 1,986,391 + CCNA_01854 0.63 +0.2 1,986,392 + CCNA_01854 0.63 -0.0 1,986,415 + CCNA_01854 0.66 -0.0 1,986,415 + CCNA_01854 0.66 +1.1 1,986,500 + CCNA_01854 0.79 -0.9 1,986,518 - CCNA_01854 0.82 -1.5 1,986,520 + CCNA_01854 0.82 -2.5 1,986,542 + CCNA_01854 0.85 -2.7 1,986,567 + CCNA_01854 0.89 -1.5 1,986,646 + +2.0 1,986,646 + +1.0 1,986,646 + +1.7 1,986,654 - -1.9 1,986,654 - +2.8 1,986,654 - -2.6 1,986,656 + +1.1 1,986,656 + +0.1 1,986,656 + +1.5 1,986,656 + +1.3 1,986,656 + +0.8 1,986,664 - +0.2 1,986,664 - -0.9 1,986,664 - +2.8 1,986,717 + +0.2 1,986,717 + +0.7 1,986,751 + -0.0 1,986,839 + +1.9 1,986,857 + CCNA_01855 0.12 -1.2 1,986,894 + CCNA_01855 0.17 +0.5 1,986,897 - CCNA_01855 0.18 -0.6 1,986,924 + CCNA_01855 0.22 -1.9 1,986,964 + CCNA_01855 0.27 +4.4 1,986,972 - CCNA_01855 0.28 -2.1 1,986,972 - CCNA_01855 0.28 -0.4 1,986,974 + CCNA_01855 0.29 +1.4 1,986,982 + CCNA_01855 0.30 -0.4 1,987,028 - CCNA_01855 0.36 -0.9 1,987,107 - CCNA_01855 0.47 +0.2 1,987,108 + CCNA_01855 0.47 +0.7 1,987,108 + CCNA_01855 0.47 -2.0 1,987,118 - CCNA_01855 0.49 -1.6 1,987,130 + CCNA_01855 0.50 +3.7 1,987,182 + CCNA_01855 0.58 +0.6 1,987,201 - CCNA_01855 0.60 -1.0 1,987,243 + CCNA_01855 0.66 +0.4 1,987,243 + CCNA_01855 0.66 +1.1 1,987,282 - CCNA_01855 0.72 -0.2 1,987,335 + CCNA_01855 0.79 +1.1 1,987,335 + CCNA_01855 0.79 +2.2 1,987,335 + CCNA_01855 0.79 +2.6 1,987,335 + CCNA_01855 0.79 +1.5 1,987,343 - CCNA_01855 0.80 -0.8 1,987,356 + CCNA_01855 0.82 +1.2 1,987,393 + CCNA_01855 0.87 +2.3 1,987,393 - CCNA_01855 0.87 +1.1 1,987,396 - CCNA_01855 0.87 -1.8 1,987,441 + +1.7 1,987,452 + +3.2 1,987,464 + -2.1 1,987,472 - +1.2 1,987,472 - -0.0 1,987,533 + +0.2 1,987,533 + +1.2 1,987,605 - +2.8 1,987,613 + +1.0 1,987,656 + CCNA_01856 0.10 -0.1 1,987,690 + CCNA_01856 0.12 -0.1 1,987,773 + CCNA_01856 0.16 +2.8 1,987,773 + CCNA_01856 0.16 -0.6 1,987,775 + CCNA_01856 0.16 -0.9 1,987,781 - CCNA_01856 0.16 -0.2 1,987,796 + CCNA_01856 0.17 -0.4 1,987,804 - CCNA_01856 0.17 -1.3 1,987,810 + CCNA_01856 0.17 -0.3 1,987,810 - CCNA_01856 0.17 -1.6 1,987,815 + CCNA_01856 0.18 +0.5 1,987,815 + CCNA_01856 0.18 +1.8 1,987,820 + CCNA_01856 0.18 +1.2 1,987,823 - CCNA_01856 0.18 +1.8 1,987,825 + CCNA_01856 0.18 +1.9 1,987,825 + CCNA_01856 0.18 -0.5 1,987,833 - CCNA_01856 0.18 -0.2 1,987,833 - CCNA_01856 0.18 +0.4 1,987,833 - CCNA_01856 0.18 +0.2 1,987,874 - CCNA_01856 0.20 -1.7 1,987,882 + CCNA_01856 0.21 +1.5 1,987,930 + CCNA_01856 0.23 -0.2 1,987,930 + CCNA_01856 0.23 +2.8 1,987,935 + CCNA_01856 0.23 +0.2 1,987,940 + CCNA_01856 0.23 +2.5 1,987,940 + CCNA_01856 0.23 +2.0 1,987,948 - CCNA_01856 0.24 +0.8 1,987,948 - CCNA_01856 0.24 +0.2 1,988,032 - CCNA_01856 0.27 -1.6 1,988,068 + CCNA_01856 0.29 +2.6 1,988,068 + -1.0 1,988,182 + CCNA_01856 0.34 +2.8 1,988,255 - CCNA_01856 0.38 +1.7 1,988,284 + CCNA_01856 0.39 -0.6 1,988,284 + CCNA_01856 0.39 -1.7 1,988,292 - CCNA_01856 0.39 +1.8 1,988,292 - CCNA_01856 0.39 +1.6 1,988,381 - CCNA_01856 0.43 -1.6 1,988,390 - CCNA_01856 0.44 -3.3 1,988,445 + CCNA_01856 0.46 +1.5 1,988,453 - CCNA_01856 0.47 +1.2
Or see this region's nucleotide sequence