Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01822

Experiment: PYE 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01820 and CCNA_01821 overlap by 4 nucleotidesCCNA_01821 and CCNA_01822 overlap by 38 nucleotidesCCNA_01822 and CCNA_01823 are separated by 277 nucleotidesCCNA_01823 and CCNA_01824 are separated by 75 nucleotides CCNA_01820: CCNA_01820 - GTP-binding protein hflX, at 1,946,223 to 1,947,563 _01820 CCNA_01821: CCNA_01821 - MazG protein, at 1,947,560 to 1,948,387 _01821 CCNA_01822: CCNA_01822 - melibiose carrier protein, at 1,948,350 to 1,949,762 _01822 CCNA_01823: CCNA_01823 - hypothetical protein, at 1,950,040 to 1,950,258 _01823 CCNA_01824: CCNA_01824 - hypothetical protein, at 1,950,334 to 1,950,669 _01824 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1947.391 kb on - strand, within CCNA_01820at 1947.396 kb on + strand, within CCNA_01820at 1947.401 kb on + strand, within CCNA_01820at 1947.409 kb on - strand, within CCNA_01820at 1947.424 kb on - strand, within CCNA_01820at 1947.451 kb on - strandat 1947.498 kb on + strandat 1947.499 kb on - strandat 1947.542 kb on + strandat 1947.542 kb on + strandat 1947.543 kb on - strandat 1947.550 kb on - strandat 1947.550 kb on - strandat 1947.564 kb on + strandat 1947.587 kb on - strandat 1947.587 kb on - strandat 1947.625 kb on + strandat 1947.625 kb on + strandat 1947.633 kb on - strandat 1947.633 kb on - strandat 1947.706 kb on + strand, within CCNA_01821at 1947.760 kb on + strand, within CCNA_01821at 1947.912 kb on - strand, within CCNA_01821at 1947.963 kb on - strand, within CCNA_01821at 1947.968 kb on - strand, within CCNA_01821at 1947.968 kb on - strand, within CCNA_01821at 1947.974 kb on - strand, within CCNA_01821at 1947.980 kb on + strand, within CCNA_01821at 1947.988 kb on - strand, within CCNA_01821at 1948.012 kb on + strand, within CCNA_01821at 1948.025 kb on - strand, within CCNA_01821at 1948.033 kb on - strand, within CCNA_01821at 1948.059 kb on - strand, within CCNA_01821at 1948.088 kb on - strand, within CCNA_01821at 1948.114 kb on - strand, within CCNA_01821at 1948.156 kb on + strand, within CCNA_01821at 1948.166 kb on + strand, within CCNA_01821at 1948.176 kb on + strand, within CCNA_01821at 1948.176 kb on + strand, within CCNA_01821at 1948.176 kb on + strand, within CCNA_01821at 1948.176 kb on + strand, within CCNA_01821at 1948.179 kb on - strand, within CCNA_01821at 1948.184 kb on - strand, within CCNA_01821at 1948.220 kb on + strand, within CCNA_01821at 1948.262 kb on + strand, within CCNA_01821at 1948.275 kb on - strand, within CCNA_01821at 1948.306 kb on + strandat 1948.327 kb on + strandat 1948.402 kb on + strandat 1948.409 kb on + strandat 1948.518 kb on + strand, within CCNA_01822at 1948.525 kb on - strand, within CCNA_01822at 1948.559 kb on - strand, within CCNA_01822at 1948.559 kb on - strand, within CCNA_01822at 1948.589 kb on + strand, within CCNA_01822at 1948.646 kb on + strand, within CCNA_01822at 1948.646 kb on + strand, within CCNA_01822at 1948.669 kb on + strand, within CCNA_01822at 1948.674 kb on + strand, within CCNA_01822at 1948.676 kb on - strand, within CCNA_01822at 1948.677 kb on - strand, within CCNA_01822at 1948.677 kb on - strand, within CCNA_01822at 1948.677 kb on - strand, within CCNA_01822at 1948.677 kb on - strand, within CCNA_01822at 1948.682 kb on - strand, within CCNA_01822at 1948.701 kb on + strand, within CCNA_01822at 1948.712 kb on + strand, within CCNA_01822at 1948.720 kb on - strand, within CCNA_01822at 1948.767 kb on + strand, within CCNA_01822at 1948.770 kb on - strand, within CCNA_01822at 1948.802 kb on + strand, within CCNA_01822at 1948.802 kb on + strand, within CCNA_01822at 1948.802 kb on + strand, within CCNA_01822at 1948.810 kb on - strand, within CCNA_01822at 1948.819 kb on + strand, within CCNA_01822at 1948.819 kb on + strand, within CCNA_01822at 1948.821 kb on + strand, within CCNA_01822at 1948.821 kb on + strand, within CCNA_01822at 1948.827 kb on - strand, within CCNA_01822at 1948.829 kb on - strand, within CCNA_01822at 1948.829 kb on - strand, within CCNA_01822at 1948.836 kb on + strand, within CCNA_01822at 1948.848 kb on + strand, within CCNA_01822at 1948.857 kb on - strand, within CCNA_01822at 1948.904 kb on + strand, within CCNA_01822at 1948.912 kb on - strand, within CCNA_01822at 1948.912 kb on - strand, within CCNA_01822at 1948.917 kb on - strand, within CCNA_01822at 1948.949 kb on - strand, within CCNA_01822at 1948.955 kb on - strand, within CCNA_01822at 1948.973 kb on - strand, within CCNA_01822at 1948.975 kb on - strand, within CCNA_01822at 1948.977 kb on + strand, within CCNA_01822at 1948.979 kb on - strand, within CCNA_01822at 1948.984 kb on + strand, within CCNA_01822at 1948.984 kb on + strand, within CCNA_01822at 1948.984 kb on + strand, within CCNA_01822at 1948.984 kb on + strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1949.059 kb on - strand, within CCNA_01822at 1949.067 kb on + strand, within CCNA_01822at 1949.124 kb on - strand, within CCNA_01822at 1949.155 kb on - strand, within CCNA_01822at 1949.195 kb on + strand, within CCNA_01822at 1949.203 kb on - strand, within CCNA_01822at 1949.220 kb on - strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.256 kb on + strand, within CCNA_01822at 1949.313 kb on + strand, within CCNA_01822at 1949.321 kb on + strand, within CCNA_01822at 1949.321 kb on + strand, within CCNA_01822at 1949.321 kb on - strand, within CCNA_01822at 1949.322 kb on - strand, within CCNA_01822at 1949.329 kb on - strand, within CCNA_01822at 1949.336 kb on - strand, within CCNA_01822at 1949.346 kb on + strand, within CCNA_01822at 1949.354 kb on - strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strandat 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.398 kb on + strand, within CCNA_01822at 1949.452 kb on + strand, within CCNA_01822at 1949.452 kb on + strand, within CCNA_01822at 1949.452 kb on + strand, within CCNA_01822at 1949.452 kb on + strand, within CCNA_01822at 1949.460 kb on - strand, within CCNA_01822at 1949.460 kb on - strand, within CCNA_01822at 1949.460 kb on - strand, within CCNA_01822at 1949.460 kb on - strand, within CCNA_01822at 1949.460 kb on - strand, within CCNA_01822at 1949.501 kb on + strand, within CCNA_01822at 1949.586 kb on - strand, within CCNA_01822at 1949.609 kb on + strand, within CCNA_01822at 1949.635 kb on - strandat 1949.649 kb on - strandat 1949.649 kb on - strandat 1949.651 kb on + strandat 1949.657 kb on + strandat 1949.678 kb on - strandat 1949.684 kb on - strandat 1949.744 kb on - strandat 1949.763 kb on + strandat 1949.771 kb on - strandat 1949.851 kb on + strandat 1949.851 kb on + strandat 1949.859 kb on - strandat 1949.911 kb on + strandat 1949.911 kb on + strandat 1949.911 kb on + strandat 1949.911 kb on + strandat 1949.911 kb on + strandat 1949.952 kb on - strandat 1949.987 kb on - strandat 1950.004 kb on - strandat 1950.100 kb on + strand, within CCNA_01823at 1950.138 kb on - strand, within CCNA_01823at 1950.157 kb on - strand, within CCNA_01823at 1950.314 kb on + strandat 1950.314 kb on + strandat 1950.332 kb on + strandat 1950.340 kb on - strandat 1950.371 kb on + strand, within CCNA_01824at 1950.371 kb on + strand, within CCNA_01824at 1950.379 kb on - strand, within CCNA_01824at 1950.381 kb on + strand, within CCNA_01824at 1950.381 kb on + strand, within CCNA_01824at 1950.389 kb on - strand, within CCNA_01824at 1950.389 kb on - strand, within CCNA_01824at 1950.438 kb on - strand, within CCNA_01824at 1950.448 kb on - strand, within CCNA_01824at 1950.448 kb on - strand, within CCNA_01824at 1950.450 kb on + strand, within CCNA_01824at 1950.458 kb on - strand, within CCNA_01824at 1950.463 kb on - strand, within CCNA_01824at 1950.463 kb on - strand, within CCNA_01824at 1950.483 kb on - strand, within CCNA_01824at 1950.534 kb on + strand, within CCNA_01824at 1950.551 kb on + strand, within CCNA_01824at 1950.579 kb on + strand, within CCNA_01824at 1950.585 kb on + strand, within CCNA_01824at 1950.593 kb on - strand, within CCNA_01824at 1950.597 kb on + strand, within CCNA_01824at 1950.619 kb on - strand, within CCNA_01824at 1950.619 kb on - strand, within CCNA_01824at 1950.619 kb on - strand, within CCNA_01824at 1950.642 kb on + strandat 1950.656 kb on - strandat 1950.677 kb on - strandat 1950.716 kb on + strandat 1950.749 kb on + strandat 1950.749 kb on + strandat 1950.752 kb on - strandat 1950.752 kb on - strandat 1950.754 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days
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1,947,391 - CCNA_01820 0.87 -0.2
1,947,396 + CCNA_01820 0.87 -0.3
1,947,401 + CCNA_01820 0.88 +0.8
1,947,409 - CCNA_01820 0.88 +0.4
1,947,424 - CCNA_01820 0.90 -1.0
1,947,451 - +0.8
1,947,498 + +1.2
1,947,499 - +1.6
1,947,542 + +1.6
1,947,542 + +0.2
1,947,543 - -0.9
1,947,550 - +1.8
1,947,550 - -2.3
1,947,564 + +0.6
1,947,587 - -1.1
1,947,587 - -1.7
1,947,625 + +1.5
1,947,625 + +0.0
1,947,633 - -0.4
1,947,633 - +0.3
1,947,706 + CCNA_01821 0.18 -0.0
1,947,760 + CCNA_01821 0.24 +1.6
1,947,912 - CCNA_01821 0.43 -1.7
1,947,963 - CCNA_01821 0.49 +1.0
1,947,968 - CCNA_01821 0.49 +0.7
1,947,968 - CCNA_01821 0.49 -2.0
1,947,974 - CCNA_01821 0.50 +2.1
1,947,980 + CCNA_01821 0.51 +0.8
1,947,988 - CCNA_01821 0.52 -1.8
1,948,012 + CCNA_01821 0.55 -2.1
1,948,025 - CCNA_01821 0.56 -0.4
1,948,033 - CCNA_01821 0.57 -0.3
1,948,059 - CCNA_01821 0.60 +1.8
1,948,088 - CCNA_01821 0.64 +0.0
1,948,114 - CCNA_01821 0.67 -0.0
1,948,156 + CCNA_01821 0.72 -2.2
1,948,166 + CCNA_01821 0.73 -1.9
1,948,176 + CCNA_01821 0.74 -0.7
1,948,176 + CCNA_01821 0.74 -2.4
1,948,176 + CCNA_01821 0.74 -1.3
1,948,176 + CCNA_01821 0.74 +0.7
1,948,179 - CCNA_01821 0.75 -0.4
1,948,184 - CCNA_01821 0.75 +0.6
1,948,220 + CCNA_01821 0.80 +2.0
1,948,262 + CCNA_01821 0.85 +0.2
1,948,275 - CCNA_01821 0.86 -0.3
1,948,306 + -0.0
1,948,327 + -1.5
1,948,402 + +1.2
1,948,409 + +0.2
1,948,518 + CCNA_01822 0.12 +0.2
1,948,525 - CCNA_01822 0.12 +0.4
1,948,559 - CCNA_01822 0.15 +1.2
1,948,559 - CCNA_01822 0.15 -0.8
1,948,589 + CCNA_01822 0.17 +0.7
1,948,646 + CCNA_01822 0.21 +1.3
1,948,646 + CCNA_01822 0.21 +1.5
1,948,669 + CCNA_01822 0.23 +0.7
1,948,674 + CCNA_01822 0.23 +2.8
1,948,676 - CCNA_01822 0.23 +0.3
1,948,677 - CCNA_01822 0.23 -2.0
1,948,677 - CCNA_01822 0.23 +2.2
1,948,677 - CCNA_01822 0.23 +0.7
1,948,677 - CCNA_01822 0.23 +2.5
1,948,682 - CCNA_01822 0.23 +0.8
1,948,701 + CCNA_01822 0.25 -1.6
1,948,712 + CCNA_01822 0.26 -0.2
1,948,720 - CCNA_01822 0.26 -0.2
1,948,767 + CCNA_01822 0.30 -1.0
1,948,770 - CCNA_01822 0.30 -2.2
1,948,802 + CCNA_01822 0.32 -0.7
1,948,802 + CCNA_01822 0.32 -1.8
1,948,802 + CCNA_01822 0.32 +0.5
1,948,810 - CCNA_01822 0.33 -1.6
1,948,819 + CCNA_01822 0.33 -0.1
1,948,819 + CCNA_01822 0.33 -0.2
1,948,821 + CCNA_01822 0.33 +2.2
1,948,821 + CCNA_01822 0.33 -1.2
1,948,827 - CCNA_01822 0.34 +0.8
1,948,829 - CCNA_01822 0.34 +2.2
1,948,829 - CCNA_01822 0.34 +3.4
1,948,836 + CCNA_01822 0.34 +2.2
1,948,848 + CCNA_01822 0.35 +2.8
1,948,857 - CCNA_01822 0.36 +1.6
1,948,904 + CCNA_01822 0.39 +0.4
1,948,912 - CCNA_01822 0.40 -0.2
1,948,912 - CCNA_01822 0.40 -0.6
1,948,917 - CCNA_01822 0.40 -1.9
1,948,949 - CCNA_01822 0.42 -1.9
1,948,955 - CCNA_01822 0.43 -0.5
1,948,973 - CCNA_01822 0.44 +1.7
1,948,975 - CCNA_01822 0.44 +2.0
1,948,977 + CCNA_01822 0.44 +1.2
1,948,979 - CCNA_01822 0.45 +3.8
1,948,984 + CCNA_01822 0.45 +3.5
1,948,984 + CCNA_01822 0.45 +1.0
1,948,984 + CCNA_01822 0.45 -1.2
1,948,984 + CCNA_01822 0.45 -0.9
1,948,992 - CCNA_01822 0.45 +1.7
1,948,992 - CCNA_01822 0.45 +2.8
1,948,992 - CCNA_01822 0.45 -1.1
1,948,992 - CCNA_01822 0.45 +0.2
1,948,992 - CCNA_01822 0.45 +1.9
1,948,992 - CCNA_01822 0.45 -1.2
1,948,992 - CCNA_01822 0.45 -0.4
1,949,059 - CCNA_01822 0.50 +0.2
1,949,067 + CCNA_01822 0.51 +0.7
1,949,124 - CCNA_01822 0.55 -2.3
1,949,155 - CCNA_01822 0.57 -3.0
1,949,195 + CCNA_01822 0.60 -1.1
1,949,203 - CCNA_01822 0.60 +0.5
1,949,220 - CCNA_01822 0.62 +0.9
1,949,236 + CCNA_01822 0.63 -0.4
1,949,236 + CCNA_01822 0.63 +0.2
1,949,236 + CCNA_01822 0.63 +0.8
1,949,236 + CCNA_01822 0.63 +2.3
1,949,236 + CCNA_01822 0.63 +0.8
1,949,236 + CCNA_01822 0.63 +0.2
1,949,244 - CCNA_01822 0.63 +0.5
1,949,244 - CCNA_01822 0.63 +1.5
1,949,244 - CCNA_01822 0.63 +1.6
1,949,244 - CCNA_01822 0.63 -2.5
1,949,244 - CCNA_01822 0.63 -2.7
1,949,244 - CCNA_01822 0.63 +4.9
1,949,244 - CCNA_01822 0.63 +1.7
1,949,244 - CCNA_01822 0.63 -3.3
1,949,244 - CCNA_01822 0.63 +2.8
1,949,244 - CCNA_01822 0.63 +1.4
1,949,256 + CCNA_01822 0.64 +1.8
1,949,313 + CCNA_01822 0.68 +2.8
1,949,321 + CCNA_01822 0.69 +1.8
1,949,321 + CCNA_01822 0.69 -1.9
1,949,321 - CCNA_01822 0.69 -0.4
1,949,322 - CCNA_01822 0.69 -1.1
1,949,329 - CCNA_01822 0.69 +0.8
1,949,336 - CCNA_01822 0.70 +2.7
1,949,346 + CCNA_01822 0.70 +0.2
1,949,354 - CCNA_01822 0.71 -2.1
1,949,368 + CCNA_01822 0.72 +2.2
1,949,368 + CCNA_01822 0.72 -0.5
1,949,368 + CCNA_01822 0.72 +0.4
1,949,368 + CCNA_01822 0.72 +0.8
1,949,368 + -2.8
1,949,368 + CCNA_01822 0.72 +4.8
1,949,368 + CCNA_01822 0.72 -1.1
1,949,368 + CCNA_01822 0.72 -2.1
1,949,368 + CCNA_01822 0.72 +1.2
1,949,376 - CCNA_01822 0.73 +2.1
1,949,376 - CCNA_01822 0.73 +0.9
1,949,376 - CCNA_01822 0.73 -0.4
1,949,376 - CCNA_01822 0.73 +1.2
1,949,376 - CCNA_01822 0.73 -2.2
1,949,376 - CCNA_01822 0.73 +0.4
1,949,376 - CCNA_01822 0.73 +0.2
1,949,398 + CCNA_01822 0.74 +2.8
1,949,452 + CCNA_01822 0.78 +2.8
1,949,452 + CCNA_01822 0.78 +1.0
1,949,452 + CCNA_01822 0.78 -1.4
1,949,452 + CCNA_01822 0.78 -1.6
1,949,460 - CCNA_01822 0.79 -1.0
1,949,460 - CCNA_01822 0.79 -1.1
1,949,460 - CCNA_01822 0.79 -2.2
1,949,460 - CCNA_01822 0.79 -1.1
1,949,460 - CCNA_01822 0.79 -0.3
1,949,501 + CCNA_01822 0.81 +2.2
1,949,586 - CCNA_01822 0.87 +0.4
1,949,609 + CCNA_01822 0.89 -1.2
1,949,635 - +1.2
1,949,649 - +1.8
1,949,649 - +0.8
1,949,651 + +0.8
1,949,657 + -1.1
1,949,678 - -2.2
1,949,684 - -0.2
1,949,744 - +1.4
1,949,763 + +0.5
1,949,771 - +0.2
1,949,851 + +1.8
1,949,851 + -3.6
1,949,859 - -1.3
1,949,911 + +0.4
1,949,911 + -0.4
1,949,911 + -2.9
1,949,911 + -0.2
1,949,911 + -1.3
1,949,952 - -0.2
1,949,987 - +2.1
1,950,004 - -0.8
1,950,100 + CCNA_01823 0.27 -0.7
1,950,138 - CCNA_01823 0.45 -0.7
1,950,157 - CCNA_01823 0.53 +2.0
1,950,314 + -1.4
1,950,314 + +0.4
1,950,332 + +0.1
1,950,340 - -0.7
1,950,371 + CCNA_01824 0.11 +0.7
1,950,371 + CCNA_01824 0.11 +1.8
1,950,379 - CCNA_01824 0.13 +2.8
1,950,381 + CCNA_01824 0.14 -0.5
1,950,381 + CCNA_01824 0.14 +0.1
1,950,389 - CCNA_01824 0.16 +2.8
1,950,389 - CCNA_01824 0.16 -1.1
1,950,438 - CCNA_01824 0.31 -1.1
1,950,448 - CCNA_01824 0.34 +2.8
1,950,448 - CCNA_01824 0.34 +0.4
1,950,450 + CCNA_01824 0.35 +0.9
1,950,458 - CCNA_01824 0.37 +0.8
1,950,463 - CCNA_01824 0.38 +3.0
1,950,463 - CCNA_01824 0.38 -0.7
1,950,483 - CCNA_01824 0.44 -0.3
1,950,534 + CCNA_01824 0.60 -3.4
1,950,551 + CCNA_01824 0.65 -0.0
1,950,579 + CCNA_01824 0.73 -1.0
1,950,585 + CCNA_01824 0.75 +1.8
1,950,593 - CCNA_01824 0.77 -2.3
1,950,597 + CCNA_01824 0.78 -1.3
1,950,619 - CCNA_01824 0.85 -1.3
1,950,619 - CCNA_01824 0.85 -2.6
1,950,619 - CCNA_01824 0.85 +1.4
1,950,642 + -1.7
1,950,656 - +0.6
1,950,677 - -2.6
1,950,716 + +1.7
1,950,749 + +0.6
1,950,749 + +0.5
1,950,752 - -1.4
1,950,752 - -0.6
1,950,754 + -0.7

Or see this region's nucleotide sequence