Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01519

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
1,627,292	+		CCNA_01517	0.72	+2.6
1,627,293	+		CCNA_01517	0.72	-2.5
1,627,293	+		CCNA_01517	0.72	-0.4
1,627,300	-		CCNA_01517	0.73	-3.9
1,627,300	-		CCNA_01517	0.73	-1.6
1,627,300	-		CCNA_01517	0.73	-3.6
1,627,300	-		CCNA_01517	0.73	-2.7
1,627,300	-		CCNA_01517	0.73	-3.0
1,627,301	-		CCNA_01517	0.73	-1.2
1,627,301	-		CCNA_01517	0.73	-2.5
1,627,301	-		CCNA_01517	0.73	-2.3
1,627,308	+		CCNA_01517	0.74	-2.5
1,627,311	-		CCNA_01517	0.74	-3.5
1,627,316	-		CCNA_01517	0.75	-1.8
1,627,318	+		CCNA_01517	0.75	-2.4
1,627,349	+		CCNA_01517	0.78	-1.5
1,627,368	-		CCNA_01517	0.80	-2.6
1,627,378	+		CCNA_01517	0.81	-2.7
1,627,455	+		CCNA_01517	0.88	-2.3
1,627,463	-		CCNA_01517	0.89	-2.1
1,627,489	-				+1.0
1,627,493	-				-1.1
1,627,493	-				-0.2
1,627,589	+				+0.6
1,627,607	+		CCNA_03892	0.11	+4.6
1,627,615	-		CCNA_03892	0.12	+1.6
1,627,628	+		CCNA_03892	0.14	+1.0
1,627,714	-		CCNA_03892	0.27	+1.5
1,627,746	+		CCNA_03892	0.32	-0.6
1,627,758	-		CCNA_03892	0.34	-0.2
1,627,781	+		CCNA_03892	0.38	-2.2
1,627,781	+		CCNA_03892	0.38	+2.3
1,627,781	+		CCNA_03892	0.38	-1.7
1,627,789	-		CCNA_03892	0.39	+0.8
1,627,789	-		CCNA_03892	0.39	+0.6
1,627,797	-		CCNA_03892	0.40	-1.0
1,627,802	+		CCNA_03892	0.41	-0.4
1,627,802	+		CCNA_03892	0.41	+0.1
1,627,802	+		CCNA_03892	0.41	-0.4
1,627,802	+		CCNA_03892	0.41	-4.0
1,627,847	+		CCNA_03892	0.48	-0.7
1,627,868	-		CCNA_03892	0.51	+2.6
1,627,870	+		CCNA_03892	0.51	-0.8
1,627,870	+		CCNA_03892	0.51	+1.4
1,627,878	-		CCNA_03892	0.53	+0.4
1,627,957	+				-1.7
1,627,957	+		CCNA_03892	0.65	+0.0
1,627,965	-		CCNA_03892	0.66	+1.8
1,627,965	-		CCNA_03892	0.66	-0.5
1,627,965	-		CCNA_03892	0.66	+1.2
1,627,965	-		CCNA_03892	0.66	-1.8
1,627,965	-		CCNA_03892	0.66	+0.2
1,627,965	-		CCNA_03892	0.66	-1.5
1,627,965	-		CCNA_03892	0.66	+0.6
1,627,977	+		CCNA_03892	0.68	+3.1
1,627,998	-		CCNA_03892	0.71	-0.1
1,628,013	+		CCNA_03892	0.73	-3.8
1,628,013	+		CCNA_03892	0.73	-0.4
1,628,016	-		CCNA_03892	0.74	+2.3
1,628,028	+		CCNA_03892	0.76	-3.6
1,628,033	+		CCNA_03892	0.77	+0.6
1,628,035	-		CCNA_03892	0.77	+0.5
1,628,041	-		CCNA_03892	0.78	-0.1
1,628,055	+		CCNA_03892	0.80	+0.9
1,628,060	+		CCNA_03892	0.81	-1.5
1,628,063	-		CCNA_03892	0.81	+2.0
1,628,134	+				+2.6
1,628,163	-				+0.3
1,628,169	-				+0.3
1,628,198	+				-0.4
1,628,224	+				+0.6
1,628,225	+				-2.8
1,628,303	+				-1.2
1,628,344	+				-2.6
1,628,344	+				-2.9
1,628,344	+				-0.4
1,628,344	+				-3.3
1,628,352	-				-3.7
1,628,352	-				-3.1
1,628,352	-				-2.4
1,628,352	-				-3.9
1,628,381	+		CCNA_01519	0.11	+0.4
1,628,386	+		CCNA_01519	0.12	+0.6
1,628,394	-		CCNA_01519	0.13	+4.2
1,628,394	-		CCNA_01519	0.13	+0.8
1,628,394	-		CCNA_01519	0.13	-3.5
1,628,440	+		CCNA_01519	0.18	-1.7
1,628,448	-		CCNA_01519	0.19	+0.5
1,628,448	-		CCNA_01519	0.19	-0.4
1,628,448	-		CCNA_01519	0.19	-0.4
1,628,466	+		CCNA_01519	0.22	-2.3
1,628,473	+		CCNA_01519	0.23	-0.4
1,628,473	+		CCNA_01519	0.23	-1.7
1,628,473	+		CCNA_01519	0.23	-1.1
1,628,481	-		CCNA_01519	0.23	-1.0
1,628,481	-		CCNA_01519	0.23	-0.5
1,628,481	-		CCNA_01519	0.23	-2.0
1,628,481	-		CCNA_01519	0.23	+1.0
1,628,483	+		CCNA_01519	0.24	-1.9
1,628,491	-		CCNA_01519	0.25	+2.6
1,628,491	-		CCNA_01519	0.25	-0.4
1,628,491	-		CCNA_01519	0.25	-2.0
1,628,516	-		CCNA_01519	0.28	+0.0
1,628,566	+		CCNA_01519	0.34	-0.8
1,628,567	+		CCNA_01519	0.34	-0.8
1,628,590	+		CCNA_01519	0.37	-2.3
1,628,613	+		CCNA_01519	0.40	-1.9
1,628,661	-		CCNA_01519	0.46	-2.3
1,628,672	+		CCNA_01519	0.47	+0.0
1,628,672	+		CCNA_01519	0.47	-1.7
1,628,702	+		CCNA_01519	0.51	-1.1
1,628,702	+		CCNA_01519	0.51	-2.2
1,628,702	+		CCNA_01519	0.51	-0.4
1,628,710	-		CCNA_01519	0.52	-1.8
1,628,710	-		CCNA_01519	0.52	+0.0
1,628,714	-		CCNA_01519	0.52	-0.2
1,628,765	+		CCNA_01519	0.58	-2.6
1,628,817	+		CCNA_01519	0.65	-1.6
1,628,817	+		CCNA_01519	0.65	-0.8
1,628,825	-		CCNA_01519	0.66	+0.7
1,628,829	+		CCNA_01519	0.66	-0.4
1,628,859	-		CCNA_01519	0.70	-0.5
1,628,877	-		CCNA_01519	0.72	-2.3
1,628,908	+		CCNA_01519	0.76	-1.5
1,628,908	+		CCNA_01519	0.76	-0.5
1,628,908	+		CCNA_01519	0.76	-1.9
1,628,912	+		CCNA_01519	0.77	-1.9
1,628,912	+		CCNA_01519	0.77	-1.5
1,628,916	-		CCNA_01519	0.77	-2.5
1,628,916	-		CCNA_01519	0.77	+0.0
1,628,916	-		CCNA_01519	0.77	+0.4
1,628,916	-		CCNA_01519	0.77	+0.3
1,628,927	+		CCNA_01519	0.78	-1.2
1,628,929	+		CCNA_01519	0.79	-2.1
1,628,964	-		CCNA_01519	0.83	+1.0
1,628,999	-				-0.8
1,629,017	-		CCNA_01519	0.89	-0.4
1,629,050	+				-3.6
1,629,051	+				-0.5
1,629,051	+				-0.3
1,629,051	+				+0.2
1,629,051	+				-2.3
1,629,051	+				-3.6
1,629,051	+				-1.3
1,629,052	+				-1.4
1,629,059	-				+1.1
1,629,059	-				+3.6
1,629,059	-				-1.7
1,629,059	-				-1.3
1,629,059	-				+0.3
1,629,060	-				+0.3
1,629,061	+				-2.2
1,629,095	-				-1.1
1,629,152	+				-2.1
1,629,174	-		CCNA_01520	0.11	-0.9
1,629,177	+		CCNA_01520	0.11	-3.3
1,629,210	+				+0.5
1,629,246	+		CCNA_01520	0.30	-1.5
1,629,271	+		CCNA_01520	0.37	-0.8
1,629,271	+		CCNA_01520	0.37	-0.3
1,629,279	-		CCNA_01520	0.39	+2.6
1,629,279	-		CCNA_01520	0.39	+0.1
1,629,328	-		CCNA_01520	0.52	-1.5
1,629,328	-		CCNA_01520	0.52	-0.8
1,629,405	+		CCNA_01520	0.72	-0.5
1,629,446	-		CCNA_01520	0.83	-0.9
1,629,474	+				-1.2
1,629,482	-				-3.2
1,629,488	-				-1.4
1,629,490	+				+1.1
1,629,525	+				+0.3
1,629,582	+				-0.4
1,629,582	+				-2.2
1,629,583	+				-1.7
1,629,583	+				-0.7
1,629,585	-				-0.4
1,629,590	-				+1.4
1,629,590	-				+1.0
1,629,590	-				+0.5
1,629,590	-				-1.8
1,629,591	-				+1.5
1,629,593	+				+0.5
1,629,613	-				-0.5
1,629,690	+				-0.2
1,629,690	+				-0.5
1,629,690	+				+0.8
1,629,698	-				+0.1
1,629,698	-				+1.8
1,629,712	+				+0.4
1,629,712	-				-2.3
1,629,719	+				-1.6
1,629,719	+				-0.0
1,629,719	+				+1.0
1,629,719	+				+0.2
1,629,727	-		CCNA_01521	0.10	+1.0
1,629,744	-		CCNA_01521	0.12	+0.1
1,629,744	-		CCNA_01521	0.12	+0.9
1,629,744	-		CCNA_01521	0.12	+0.5
1,629,788	-		CCNA_01521	0.18	+1.1
1,629,839	-		CCNA_01521	0.24	+0.4
1,629,866	+		CCNA_01521	0.27	+0.8
1,629,878	+		CCNA_01521	0.29	+0.0
1,629,898	+		CCNA_01521	0.31	-0.3
1,629,906	-		CCNA_01521	0.32	-1.0
1,629,906	-		CCNA_01521	0.32	+0.8
1,629,908	+		CCNA_01521	0.32	+1.3
1,629,908	+		CCNA_01521	0.32	+1.6
1,629,925	+		CCNA_01521	0.35	+1.4
1,629,955	-		CCNA_01521	0.38	+0.3
1,629,955	-		CCNA_01521	0.38	+2.2
1,629,978	+		CCNA_01521	0.41	-1.5
1,629,985	+		CCNA_01521	0.42	-2.1
1,630,034	-		CCNA_01521	0.48	+1.0
1,630,054	+		CCNA_01521	0.50	+1.9
1,630,102	+		CCNA_01521	0.56	+0.3