Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01467

Experiment: PYE 30C survival rep2 28 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01465 and CCNA_01466 are separated by 121 nucleotidesCCNA_01466 and CCNA_01467 are separated by 122 nucleotidesCCNA_01467 and CCNA_01468 are separated by 8 nucleotidesCCNA_01468 and CCNA_01469 overlap by 4 nucleotidesCCNA_01469 and CCNA_01470 overlap by 1 nucleotides CCNA_01465: CCNA_01465 - methyl-accepting chemotaxis protein, at 1,572,606 to 1,574,201 _01465 CCNA_01466: CCNA_01466 - hypothetical protein, at 1,574,323 to 1,574,589 _01466 CCNA_01467: CCNA_01467 - cytochrome cbb3 oxidase subunit I ccoN, at 1,574,712 to 1,576,358 _01467 CCNA_01468: CCNA_01468 - cytochrome cbb3 oxidase, cytochrome c subunit ccoO, at 1,576,367 to 1,577,110 _01468 CCNA_01469: CCNA_01469 - cytochrome cbb3 oxidase, subunit ccoQ, at 1,577,107 to 1,577,274 _01469 CCNA_01470: CCNA_01470 - cytochrome cbb3 oxidase, diheme subunit, membrane-bound ccoP, at 1,577,274 to 1,578,140 _01470 Position (kb) 1574 1575 1576 1577Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1573.754 kb on + strand, within CCNA_01465at 1573.818 kb on - strand, within CCNA_01465at 1573.825 kb on + strand, within CCNA_01465at 1573.843 kb on - strand, within CCNA_01465at 1573.859 kb on + strand, within CCNA_01465at 1573.867 kb on - strand, within CCNA_01465at 1573.887 kb on + strand, within CCNA_01465at 1573.887 kb on + strand, within CCNA_01465at 1573.892 kb on + strand, within CCNA_01465at 1573.904 kb on + strand, within CCNA_01465at 1573.932 kb on + strand, within CCNA_01465at 1573.932 kb on + strand, within CCNA_01465at 1573.940 kb on + strand, within CCNA_01465at 1573.940 kb on - strand, within CCNA_01465at 1573.940 kb on - strand, within CCNA_01465at 1573.984 kb on - strand, within CCNA_01465at 1573.987 kb on - strand, within CCNA_01465at 1574.028 kb on + strand, within CCNA_01465at 1574.028 kb on + strand, within CCNA_01465at 1574.028 kb on + strandat 1574.059 kb on - strandat 1574.061 kb on + strandat 1574.061 kb on + strandat 1574.069 kb on - strandat 1574.074 kb on - strandat 1574.143 kb on + strandat 1574.153 kb on + strandat 1574.186 kb on + strandat 1574.243 kb on + strandat 1574.243 kb on + strandat 1574.243 kb on + strandat 1574.243 kb on + strandat 1574.243 kb on + strandat 1574.251 kb on - strandat 1574.251 kb on - strandat 1574.322 kb on - strandat 1574.338 kb on + strandat 1574.368 kb on - strand, within CCNA_01466at 1574.421 kb on + strand, within CCNA_01466at 1574.426 kb on + strand, within CCNA_01466at 1574.447 kb on + strandat 1574.460 kb on - strand, within CCNA_01466at 1574.462 kb on + strand, within CCNA_01466at 1574.465 kb on + strand, within CCNA_01466at 1574.465 kb on - strand, within CCNA_01466at 1574.473 kb on - strand, within CCNA_01466at 1574.478 kb on - strand, within CCNA_01466at 1574.498 kb on + strand, within CCNA_01466at 1574.506 kb on - strand, within CCNA_01466at 1574.514 kb on - strand, within CCNA_01466at 1574.522 kb on - strand, within CCNA_01466at 1574.535 kb on + strand, within CCNA_01466at 1574.538 kb on - strand, within CCNA_01466at 1574.555 kb on - strand, within CCNA_01466at 1574.558 kb on - strand, within CCNA_01466at 1574.598 kb on + strandat 1574.605 kb on + strandat 1574.605 kb on + strandat 1574.613 kb on - strandat 1574.614 kb on + strandat 1574.639 kb on + strandat 1574.647 kb on - strandat 1574.647 kb on - strandat 1574.647 kb on - strandat 1574.658 kb on - strandat 1574.694 kb on - strandat 1574.706 kb on + strandat 1574.714 kb on - strandat 1574.801 kb on + strandat 1574.801 kb on + strandat 1574.806 kb on + strandat 1574.806 kb on + strandat 1574.809 kb on - strandat 1574.843 kb on + strandat 1574.851 kb on + strandat 1574.851 kb on + strandat 1574.851 kb on - strandat 1574.859 kb on - strandat 1574.886 kb on - strand, within CCNA_01467at 1574.975 kb on + strand, within CCNA_01467at 1574.975 kb on + strand, within CCNA_01467at 1574.975 kb on + strand, within CCNA_01467at 1574.975 kb on + strand, within CCNA_01467at 1574.975 kb on + strand, within CCNA_01467at 1574.979 kb on - strand, within CCNA_01467at 1574.983 kb on - strandat 1575.026 kb on + strand, within CCNA_01467at 1575.054 kb on + strand, within CCNA_01467at 1575.062 kb on - strand, within CCNA_01467at 1575.105 kb on - strand, within CCNA_01467at 1575.146 kb on + strand, within CCNA_01467at 1575.146 kb on + strand, within CCNA_01467at 1575.146 kb on + strand, within CCNA_01467at 1575.154 kb on - strand, within CCNA_01467at 1575.224 kb on + strand, within CCNA_01467at 1575.260 kb on - strand, within CCNA_01467at 1575.309 kb on - strand, within CCNA_01467at 1575.309 kb on - strand, within CCNA_01467at 1575.331 kb on - strand, within CCNA_01467at 1575.360 kb on + strand, within CCNA_01467at 1575.378 kb on + strand, within CCNA_01467at 1575.386 kb on - strand, within CCNA_01467at 1575.386 kb on - strand, within CCNA_01467at 1575.442 kb on - strand, within CCNA_01467at 1575.473 kb on + strand, within CCNA_01467at 1575.493 kb on - strand, within CCNA_01467at 1575.503 kb on - strand, within CCNA_01467at 1575.517 kb on + strand, within CCNA_01467at 1575.522 kb on + strand, within CCNA_01467at 1575.522 kb on + strand, within CCNA_01467at 1575.522 kb on + strand, within CCNA_01467at 1575.525 kb on - strand, within CCNA_01467at 1575.529 kb on - strand, within CCNA_01467at 1575.585 kb on + strand, within CCNA_01467at 1575.585 kb on + strand, within CCNA_01467at 1575.587 kb on + strand, within CCNA_01467at 1575.593 kb on - strand, within CCNA_01467at 1575.612 kb on - strand, within CCNA_01467at 1575.621 kb on + strand, within CCNA_01467at 1575.629 kb on - strand, within CCNA_01467at 1575.629 kb on - strand, within CCNA_01467at 1575.652 kb on + strand, within CCNA_01467at 1575.658 kb on - strand, within CCNA_01467at 1575.658 kb on - strand, within CCNA_01467at 1575.658 kb on - strand, within CCNA_01467at 1575.658 kb on - strand, within CCNA_01467at 1575.674 kb on + strand, within CCNA_01467at 1575.674 kb on + strand, within CCNA_01467at 1575.674 kb on + strand, within CCNA_01467at 1575.674 kb on + strand, within CCNA_01467at 1575.682 kb on - strand, within CCNA_01467at 1575.684 kb on + strand, within CCNA_01467at 1575.685 kb on + strand, within CCNA_01467at 1575.698 kb on + strand, within CCNA_01467at 1575.698 kb on + strand, within CCNA_01467at 1575.698 kb on + strand, within CCNA_01467at 1575.706 kb on - strand, within CCNA_01467at 1575.706 kb on - strand, within CCNA_01467at 1575.706 kb on - strand, within CCNA_01467at 1575.706 kb on - strand, within CCNA_01467at 1575.706 kb on - strand, within CCNA_01467at 1575.706 kb on - strand, within CCNA_01467at 1575.731 kb on - strand, within CCNA_01467at 1575.734 kb on + strand, within CCNA_01467at 1575.742 kb on - strand, within CCNA_01467at 1575.811 kb on - strand, within CCNA_01467at 1575.814 kb on + strand, within CCNA_01467at 1575.829 kb on - strand, within CCNA_01467at 1575.853 kb on - strand, within CCNA_01467at 1575.884 kb on + strand, within CCNA_01467at 1575.891 kb on + strand, within CCNA_01467at 1575.891 kb on + strand, within CCNA_01467at 1575.934 kb on + strand, within CCNA_01467at 1575.962 kb on + strand, within CCNA_01467at 1575.969 kb on + strand, within CCNA_01467at 1575.969 kb on + strand, within CCNA_01467at 1575.977 kb on - strand, within CCNA_01467at 1575.977 kb on - strand, within CCNA_01467at 1575.984 kb on + strand, within CCNA_01467at 1576.073 kb on + strand, within CCNA_01467at 1576.081 kb on - strand, within CCNA_01467at 1576.081 kb on - strand, within CCNA_01467at 1576.081 kb on - strand, within CCNA_01467at 1576.110 kb on + strand, within CCNA_01467at 1576.124 kb on - strand, within CCNA_01467at 1576.145 kb on + strand, within CCNA_01467at 1576.162 kb on - strand, within CCNA_01467at 1576.247 kb on + strandat 1576.259 kb on - strandat 1576.352 kb on + strandat 1576.372 kb on + strandat 1576.395 kb on - strandat 1576.429 kb on + strandat 1576.456 kb on + strand, within CCNA_01468at 1576.474 kb on + strand, within CCNA_01468at 1576.474 kb on + strand, within CCNA_01468at 1576.482 kb on - strand, within CCNA_01468at 1576.482 kb on - strand, within CCNA_01468at 1576.482 kb on - strand, within CCNA_01468at 1576.482 kb on - strand, within CCNA_01468at 1576.501 kb on + strand, within CCNA_01468at 1576.501 kb on + strand, within CCNA_01468at 1576.509 kb on - strand, within CCNA_01468at 1576.509 kb on - strand, within CCNA_01468at 1576.516 kb on + strand, within CCNA_01468at 1576.518 kb on + strand, within CCNA_01468at 1576.527 kb on + strand, within CCNA_01468at 1576.534 kb on - strand, within CCNA_01468at 1576.534 kb on - strand, within CCNA_01468at 1576.534 kb on - strand, within CCNA_01468at 1576.643 kb on + strand, within CCNA_01468at 1576.652 kb on + strand, within CCNA_01468at 1576.692 kb on + strand, within CCNA_01468at 1576.692 kb on + strand, within CCNA_01468at 1576.700 kb on - strand, within CCNA_01468at 1576.700 kb on - strand, within CCNA_01468at 1576.700 kb on - strand, within CCNA_01468at 1576.700 kb on - strand, within CCNA_01468at 1576.705 kb on - strand, within CCNA_01468at 1576.753 kb on - strand, within CCNA_01468at 1576.783 kb on + strand, within CCNA_01468at 1576.819 kb on + strand, within CCNA_01468at 1576.850 kb on + strand, within CCNA_01468at 1576.873 kb on + strand, within CCNA_01468at 1576.881 kb on - strand, within CCNA_01468at 1576.896 kb on - strand, within CCNA_01468at 1576.930 kb on + strand, within CCNA_01468at 1576.944 kb on + strand, within CCNA_01468at 1576.952 kb on - strand, within CCNA_01468at 1576.986 kb on - strand, within CCNA_01468at 1577.004 kb on + strand, within CCNA_01468at 1577.038 kb on - strandat 1577.060 kb on + strandat 1577.068 kb on - strandat 1577.077 kb on + strandat 1577.085 kb on - strandat 1577.129 kb on + strand, within CCNA_01469at 1577.141 kb on + strand, within CCNA_01469at 1577.150 kb on + strand, within CCNA_01469at 1577.160 kb on + strand, within CCNA_01469at 1577.175 kb on + strand, within CCNA_01469at 1577.203 kb on + strand, within CCNA_01469at 1577.227 kb on - strand, within CCNA_01469at 1577.239 kb on + strand, within CCNA_01469at 1577.248 kb on + strand, within CCNA_01469at 1577.263 kb on + strandat 1577.263 kb on + strandat 1577.263 kb on + strandat 1577.278 kb on - strandat 1577.282 kb on + strandat 1577.297 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days
remove
1,573,754 + CCNA_01465 0.72 +2.7
1,573,818 - CCNA_01465 0.76 +1.7
1,573,825 + CCNA_01465 0.76 -0.7
1,573,843 - CCNA_01465 0.78 -1.0
1,573,859 + CCNA_01465 0.79 -2.3
1,573,867 - CCNA_01465 0.79 +0.8
1,573,887 + CCNA_01465 0.80 -0.1
1,573,887 + CCNA_01465 0.80 -3.1
1,573,892 + CCNA_01465 0.81 +2.1
1,573,904 + CCNA_01465 0.81 +1.4
1,573,932 + CCNA_01465 0.83 +0.3
1,573,932 + CCNA_01465 0.83 -1.8
1,573,940 + CCNA_01465 0.84 +0.7
1,573,940 - CCNA_01465 0.84 -2.0
1,573,940 - CCNA_01465 0.84 -3.2
1,573,984 - CCNA_01465 0.86 +0.3
1,573,987 - CCNA_01465 0.87 +1.0
1,574,028 + CCNA_01465 0.89 -0.8
1,574,028 + CCNA_01465 0.89 -0.7
1,574,028 + -1.1
1,574,059 - +1.2
1,574,061 + -0.1
1,574,061 + -2.0
1,574,069 - -2.1
1,574,074 - -0.0
1,574,143 + -0.2
1,574,153 + -0.6
1,574,186 + +1.1
1,574,243 + -1.4
1,574,243 + -1.9
1,574,243 + +0.3
1,574,243 + +2.6
1,574,243 + +0.6
1,574,251 - -0.4
1,574,251 - -1.8
1,574,322 - -0.9
1,574,338 + +0.6
1,574,368 - CCNA_01466 0.17 +1.9
1,574,421 + CCNA_01466 0.37 +0.3
1,574,426 + CCNA_01466 0.39 -1.8
1,574,447 + -0.7
1,574,460 - CCNA_01466 0.51 -1.6
1,574,462 + CCNA_01466 0.52 -1.2
1,574,465 + CCNA_01466 0.53 +0.3
1,574,465 - CCNA_01466 0.53 +0.3
1,574,473 - CCNA_01466 0.56 -2.8
1,574,478 - CCNA_01466 0.58 -1.2
1,574,498 + CCNA_01466 0.66 +2.6
1,574,506 - CCNA_01466 0.69 -2.0
1,574,514 - CCNA_01466 0.72 -4.1
1,574,522 - CCNA_01466 0.75 -0.8
1,574,535 + CCNA_01466 0.79 -2.1
1,574,538 - CCNA_01466 0.81 -1.1
1,574,555 - CCNA_01466 0.87 -0.6
1,574,558 - CCNA_01466 0.88 -2.5
1,574,598 + +0.3
1,574,605 + -0.7
1,574,605 + -1.5
1,574,613 - -2.5
1,574,614 + -2.0
1,574,639 + +2.6
1,574,647 - -0.4
1,574,647 - -1.2
1,574,647 - +1.6
1,574,658 - -1.9
1,574,694 - -0.3
1,574,706 + -2.7
1,574,714 - -1.6
1,574,801 + -0.7
1,574,801 + -1.0
1,574,806 + -0.4
1,574,806 + -0.3
1,574,809 - +0.6
1,574,843 + -2.3
1,574,851 + -3.1
1,574,851 + -0.3
1,574,851 - +0.6
1,574,859 - -2.0
1,574,886 - CCNA_01467 0.11 -0.4
1,574,975 + CCNA_01467 0.16 -3.8
1,574,975 + CCNA_01467 0.16 -2.6
1,574,975 + CCNA_01467 0.16 +0.3
1,574,975 + CCNA_01467 0.16 -2.7
1,574,975 + CCNA_01467 0.16 +0.3
1,574,979 - CCNA_01467 0.16 -3.3
1,574,983 - +0.3
1,575,026 + CCNA_01467 0.19 -1.8
1,575,054 + CCNA_01467 0.21 -0.2
1,575,062 - CCNA_01467 0.21 +1.0
1,575,105 - CCNA_01467 0.24 -1.0
1,575,146 + CCNA_01467 0.26 -2.1
1,575,146 + CCNA_01467 0.26 +2.6
1,575,146 + CCNA_01467 0.26 -0.9
1,575,154 - CCNA_01467 0.27 +0.8
1,575,224 + CCNA_01467 0.31 -0.7
1,575,260 - CCNA_01467 0.33 -0.6
1,575,309 - CCNA_01467 0.36 -0.2
1,575,309 - CCNA_01467 0.36 -0.1
1,575,331 - CCNA_01467 0.38 +1.0
1,575,360 + CCNA_01467 0.39 -2.5
1,575,378 + CCNA_01467 0.40 -1.0
1,575,386 - CCNA_01467 0.41 -1.2
1,575,386 - CCNA_01467 0.41 -0.4
1,575,442 - CCNA_01467 0.44 -3.2
1,575,473 + CCNA_01467 0.46 -1.7
1,575,493 - CCNA_01467 0.47 +2.6
1,575,503 - CCNA_01467 0.48 +0.0
1,575,517 + CCNA_01467 0.49 +0.3
1,575,522 + CCNA_01467 0.49 -0.5
1,575,522 + CCNA_01467 0.49 -1.4
1,575,522 + CCNA_01467 0.49 -0.9
1,575,525 - CCNA_01467 0.49 -0.6
1,575,529 - CCNA_01467 0.50 +1.0
1,575,585 + CCNA_01467 0.53 -1.4
1,575,585 + CCNA_01467 0.53 -1.2
1,575,587 + CCNA_01467 0.53 -1.6
1,575,593 - CCNA_01467 0.53 +2.6
1,575,612 - CCNA_01467 0.55 -0.2
1,575,621 + CCNA_01467 0.55 -1.3
1,575,629 - CCNA_01467 0.56 -0.4
1,575,629 - CCNA_01467 0.56 +1.6
1,575,652 + CCNA_01467 0.57 -1.4
1,575,658 - CCNA_01467 0.57 +0.0
1,575,658 - CCNA_01467 0.57 +2.6
1,575,658 - CCNA_01467 0.57 -1.4
1,575,658 - CCNA_01467 0.57 +1.0
1,575,674 + CCNA_01467 0.58 -2.7
1,575,674 + CCNA_01467 0.58 -2.9
1,575,674 + CCNA_01467 0.58 +0.6
1,575,674 + CCNA_01467 0.58 +0.0
1,575,682 - CCNA_01467 0.59 +2.6
1,575,684 + CCNA_01467 0.59 -3.2
1,575,685 + CCNA_01467 0.59 -0.4
1,575,698 + CCNA_01467 0.60 -2.7
1,575,698 + CCNA_01467 0.60 -3.3
1,575,698 + CCNA_01467 0.60 -1.4
1,575,706 - CCNA_01467 0.60 -1.7
1,575,706 - CCNA_01467 0.60 -1.9
1,575,706 - CCNA_01467 0.60 -2.4
1,575,706 - CCNA_01467 0.60 +2.6
1,575,706 - CCNA_01467 0.60 -0.6
1,575,706 - CCNA_01467 0.60 -0.2
1,575,731 - CCNA_01467 0.62 +0.0
1,575,734 + CCNA_01467 0.62 +2.6
1,575,742 - CCNA_01467 0.63 -1.9
1,575,811 - CCNA_01467 0.67 -2.6
1,575,814 + CCNA_01467 0.67 -0.7
1,575,829 - CCNA_01467 0.68 -2.3
1,575,853 - CCNA_01467 0.69 +0.3
1,575,884 + CCNA_01467 0.71 -0.9
1,575,891 + CCNA_01467 0.72 -0.7
1,575,891 + CCNA_01467 0.72 +0.6
1,575,934 + CCNA_01467 0.74 -0.4
1,575,962 + CCNA_01467 0.76 +0.3
1,575,969 + CCNA_01467 0.76 -1.0
1,575,969 + CCNA_01467 0.76 -3.4
1,575,977 - CCNA_01467 0.77 -0.6
1,575,977 - CCNA_01467 0.77 +1.6
1,575,984 + CCNA_01467 0.77 +3.2
1,576,073 + CCNA_01467 0.83 -2.6
1,576,081 - CCNA_01467 0.83 +0.3
1,576,081 - CCNA_01467 0.83 -2.0
1,576,081 - CCNA_01467 0.83 +0.0
1,576,110 + CCNA_01467 0.85 +0.6
1,576,124 - CCNA_01467 0.86 +2.6
1,576,145 + CCNA_01467 0.87 -3.0
1,576,162 - CCNA_01467 0.88 +0.0
1,576,247 + +2.6
1,576,259 - -0.4
1,576,352 + -0.2
1,576,372 + -0.3
1,576,395 - +1.0
1,576,429 + -1.8
1,576,456 + CCNA_01468 0.12 +0.0
1,576,474 + CCNA_01468 0.14 +0.0
1,576,474 + CCNA_01468 0.14 -1.7
1,576,482 - CCNA_01468 0.15 -1.8
1,576,482 - CCNA_01468 0.15 -2.2
1,576,482 - CCNA_01468 0.15 -1.4
1,576,482 - CCNA_01468 0.15 -0.6
1,576,501 + CCNA_01468 0.18 -1.8
1,576,501 + CCNA_01468 0.18 -1.7
1,576,509 - CCNA_01468 0.19 +0.3
1,576,509 - CCNA_01468 0.19 -2.0
1,576,516 + CCNA_01468 0.20 -2.6
1,576,518 + CCNA_01468 0.20 -2.6
1,576,527 + CCNA_01468 0.22 -1.2
1,576,534 - CCNA_01468 0.22 -0.2
1,576,534 - CCNA_01468 0.22 -1.4
1,576,534 - CCNA_01468 0.22 -0.7
1,576,643 + CCNA_01468 0.37 -2.1
1,576,652 + CCNA_01468 0.38 +0.8
1,576,692 + CCNA_01468 0.44 -4.3
1,576,692 + CCNA_01468 0.44 +0.6
1,576,700 - CCNA_01468 0.45 +2.6
1,576,700 - CCNA_01468 0.45 -1.7
1,576,700 - CCNA_01468 0.45 -2.8
1,576,700 - CCNA_01468 0.45 -1.2
1,576,705 - CCNA_01468 0.45 -0.8
1,576,753 - CCNA_01468 0.52 -1.8
1,576,783 + CCNA_01468 0.56 -1.2
1,576,819 + CCNA_01468 0.61 -2.0
1,576,850 + CCNA_01468 0.65 +2.0
1,576,873 + CCNA_01468 0.68 +1.6
1,576,881 - CCNA_01468 0.69 +1.6
1,576,896 - CCNA_01468 0.71 -0.4
1,576,930 + CCNA_01468 0.76 -0.8
1,576,944 + CCNA_01468 0.78 +1.0
1,576,952 - CCNA_01468 0.79 -3.0
1,576,986 - CCNA_01468 0.83 -1.0
1,577,004 + CCNA_01468 0.86 -1.0
1,577,038 - +0.3
1,577,060 + -1.2
1,577,068 - -0.7
1,577,077 + -1.6
1,577,085 - -2.0
1,577,129 + CCNA_01469 0.13 -1.3
1,577,141 + CCNA_01469 0.20 +0.1
1,577,150 + CCNA_01469 0.26 -2.1
1,577,160 + CCNA_01469 0.32 +0.3
1,577,175 + CCNA_01469 0.40 -0.8
1,577,203 + CCNA_01469 0.57 -0.4
1,577,227 - CCNA_01469 0.71 +1.6
1,577,239 + CCNA_01469 0.79 -0.7
1,577,248 + CCNA_01469 0.84 -2.2
1,577,263 + +0.4
1,577,263 + +1.6
1,577,263 + +1.5
1,577,278 - -1.0
1,577,282 + -2.1
1,577,297 + -0.3

Or see this region's nucleotide sequence