Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01390

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
1,506,413	-		CCNA_01389	0.11	+0.0
1,506,430	+		CCNA_01389	0.13	-1.2
1,506,474	-		CCNA_01389	0.17	-0.4
1,506,484	+		CCNA_01389	0.18	-2.2
1,506,539	+		CCNA_01389	0.24	-0.5
1,506,588	+		CCNA_01389	0.28	+0.0
1,506,596	-		CCNA_01389	0.29	+0.0
1,506,621	+		CCNA_01389	0.32	+0.9
1,506,626	+		CCNA_01389	0.32	+0.8
1,506,769	+		CCNA_01389	0.46	+0.9
1,506,782	-		CCNA_01389	0.48	+2.3
1,506,806	+		CCNA_01389	0.50	-0.8
1,506,814	-		CCNA_01389	0.51	-1.8
1,506,814	-		CCNA_01389	0.51	+0.3
1,506,834	+		CCNA_01389	0.53	+1.0
1,506,921	+		CCNA_01389	0.61	-0.7
1,506,935	+		CCNA_01389	0.63	-2.0
1,506,950	+		CCNA_01389	0.64	+2.2
1,506,976	-		CCNA_01389	0.67	+1.0
1,506,983	+		CCNA_01389	0.67	+1.2
1,506,983	+		CCNA_01389	0.67	-1.0
1,506,983	+		CCNA_01389	0.67	+1.0
1,507,002	+		CCNA_01389	0.69	+0.4
1,507,002	+		CCNA_01389	0.69	-1.7
1,507,015	-		CCNA_01389	0.71	-2.3
1,507,015	-		CCNA_01389	0.71	-1.5
1,507,022	-		CCNA_01389	0.71	+0.3
1,507,034	-		CCNA_01389	0.72	+1.8
1,507,056	+		CCNA_01389	0.75	+1.4
1,507,073	-		CCNA_01389	0.76	-0.6
1,507,077	+		CCNA_01389	0.77	-2.0
1,507,100	-		CCNA_01389	0.79	+2.6
1,507,137	+		CCNA_01389	0.83	-0.7
1,507,141	-		CCNA_01389	0.83	-0.6
1,507,142	+		CCNA_01389	0.83	+1.0
1,507,150	-		CCNA_01389	0.84	+1.6
1,507,171	-		CCNA_01389	0.86	-0.5
1,507,222	+				-1.2
1,507,246	+				+0.9
1,507,246	+				-1.4
1,507,246	+				-2.2
1,507,246	+				+0.5
1,507,254	-				-2.7
1,507,254	-				-1.0
1,507,260	-				+0.5
1,507,266	+				+0.3
1,507,267	-				-2.2
1,507,302	+				+1.4
1,507,315	+				-0.9
1,507,337	+				+0.8
1,507,378	+				-1.4
1,507,446	-				-0.4
1,507,447	-				-1.2
1,507,480	-				+0.3
1,507,490	-				-0.7
1,507,497	+				-1.9
1,507,550	+				-2.2
1,507,550	+				+1.0
1,507,555	+		CCNA_01390	0.10	-1.5
1,507,563	-		CCNA_01390	0.11	+0.3
1,507,563	-		CCNA_01390	0.11	-0.6
1,507,585	+		CCNA_01390	0.12	+1.3
1,507,585	+		CCNA_01390	0.12	-1.4
1,507,585	+		CCNA_01390	0.12	-1.9
1,507,636	-		CCNA_01390	0.15	-0.2
1,507,676	+		CCNA_01390	0.18	-1.5
1,507,684	-		CCNA_01390	0.18	+1.3
1,507,692	+		CCNA_01390	0.19	-0.5
1,507,711	+		CCNA_01390	0.20	+0.6
1,507,714	-		CCNA_01390	0.20	-2.5
1,507,719	-		CCNA_01390	0.20	+1.8
1,507,719	-		CCNA_01390	0.20	-0.6
1,507,742	-		CCNA_01390	0.22	+1.0
1,507,810	-		CCNA_01390	0.26	-0.4
1,507,816	-		CCNA_01390	0.26	-2.1
1,507,849	+		CCNA_01390	0.29	+0.4
1,507,887	+		CCNA_01390	0.31	-0.7
1,507,894	-		CCNA_01390	0.31	-1.9
1,507,894	-		CCNA_01390	0.31	+1.5
1,507,894	-		CCNA_01390	0.31	-2.3
1,507,937	+		CCNA_01390	0.34	-1.6
1,507,937	+		CCNA_01390	0.34	+0.9
1,507,945	-		CCNA_01390	0.34	-0.4
1,507,945	-		CCNA_01390	0.34	-1.6
1,508,020	-		CCNA_01390	0.39	-0.6
1,508,073	-		CCNA_01390	0.42	+3.1
1,508,093	-		CCNA_01390	0.44	-2.1
1,508,112	+		CCNA_01390	0.45	+0.4
1,508,113	+		CCNA_01390	0.45	+1.4
1,508,168	-		CCNA_01390	0.48	-1.9
1,508,169	-		CCNA_01390	0.48	-2.4
1,508,195	-		CCNA_01390	0.50	+1.0
1,508,201	+		CCNA_01390	0.50	-1.4
1,508,209	-		CCNA_01390	0.51	-2.7
1,508,287	-		CCNA_01390	0.56	+3.6
1,508,289	+		CCNA_01390	0.56	-1.5
1,508,336	+		CCNA_01390	0.59	-2.6
1,508,349	-		CCNA_01390	0.59	-1.1
1,508,377	-		CCNA_01390	0.61	+0.2
1,508,386	-		CCNA_01390	0.62	+1.6
1,508,435	+		CCNA_01390	0.65	-1.0
1,508,443	-		CCNA_01390	0.65	+1.6
1,508,443	-		CCNA_01390	0.65	+1.4
1,508,582	+		CCNA_01390	0.74	-0.4
1,508,582	+				-0.5
1,508,583	+		CCNA_01390	0.74	-0.7
1,508,591	-		CCNA_01390	0.74	-2.6
1,508,617	-		CCNA_01390	0.76	-0.4
1,508,620	+		CCNA_01390	0.76	-2.0
1,508,658	+		CCNA_01390	0.79	-0.7
1,508,666	-		CCNA_01390	0.79	-1.8
1,508,719	-		CCNA_01390	0.82	-0.1
1,508,719	-		CCNA_01390	0.82	-0.9
1,508,729	-		CCNA_01390	0.83	+1.6
1,508,749	+		CCNA_01390	0.84	-1.1
1,508,754	+		CCNA_01390	0.85	-1.1
1,508,754	+		CCNA_01390	0.85	+0.6
1,508,757	-		CCNA_01390	0.85	-1.5
1,508,767	-		CCNA_01390	0.85	-3.0
1,508,783	+		CCNA_01390	0.86	-0.4
1,508,783	+		CCNA_01390	0.86	-1.7
1,508,792	-		CCNA_01390	0.87	-0.6
1,508,853	-				+0.8
1,508,887	-				-2.4
1,508,904	-				-0.3
1,508,906	-				-0.5
1,508,913	+				+2.6
1,508,914	-				+2.6
1,508,921	-				-1.1
1,508,921	-				+3.0
1,508,921	-				-2.0
1,508,921	-				-1.9
1,508,934	-				-0.7
1,508,939	-				+0.1
1,508,963	+				-2.3
1,509,057	+				-0.9
1,509,069	+				-0.9
1,509,069	+				+0.7
1,509,069	+				+3.0
1,509,147	+				+0.5
1,509,216	+		CCNA_01391	0.14	-0.3
1,509,224	-		CCNA_01391	0.14	-2.4
1,509,233	-		CCNA_01391	0.15	-1.6
1,509,262	-		CCNA_01391	0.18	-1.3
1,509,296	+		CCNA_01391	0.21	+0.4
1,509,297	+		CCNA_01391	0.21	-1.7
1,509,304	-		CCNA_01391	0.22	-0.2
1,509,309	-		CCNA_01391	0.22	-0.6
1,509,334	+		CCNA_01391	0.25	+1.7
1,509,351	-		CCNA_01391	0.26	-1.6
1,509,362	-		CCNA_01391	0.27	-1.4
1,509,383	-		CCNA_01391	0.29	-3.7
1,509,385	-		CCNA_01391	0.29	+1.0
1,509,390	-		CCNA_01391	0.30	-0.1
1,509,426	+		CCNA_01391	0.33	+1.0
1,509,434	-		CCNA_01391	0.34	+0.2
1,509,434	-		CCNA_01391	0.34	+0.1
1,509,434	-		CCNA_01391	0.34	+0.3
1,509,540	-		CCNA_01391	0.44	-2.8
1,509,560	-		CCNA_01391	0.46	+0.6
1,509,590	+		CCNA_01391	0.48	+0.3
1,509,592	-		CCNA_01391	0.48	-2.1
1,509,660	-		CCNA_01391	0.55	-0.6
1,509,660	-		CCNA_01391	0.55	-2.0
1,509,677	+		CCNA_01391	0.56	-2.2
1,509,677	+		CCNA_01391	0.56	-0.1
1,509,685	-		CCNA_01391	0.57	-2.7
1,509,685	-		CCNA_01391	0.57	-1.6
1,509,685	-		CCNA_01391	0.57	-1.0
1,509,694	+		CCNA_01391	0.58	-2.4
1,509,728	+		CCNA_01391	0.61	-1.9
1,509,728	+		CCNA_01391	0.61	+1.3
1,509,779	-		CCNA_01391	0.66	-1.4
1,509,783	+		CCNA_01391	0.66	+0.6
1,509,784	-		CCNA_01391	0.66	-1.3
1,509,784	-		CCNA_01391	0.66	+0.9
1,509,808	+		CCNA_01391	0.68	+0.4
1,509,859	-		CCNA_01391	0.73	-2.2
1,509,888	-		CCNA_01391	0.76	-0.5
1,509,900	+		CCNA_01391	0.77	+1.2
1,509,908	-		CCNA_01391	0.78	-0.6
1,509,908	-		CCNA_01391	0.78	-1.7
1,509,934	+		CCNA_01391	0.80	+0.0
1,509,954	+		CCNA_01391	0.82	-1.7
1,509,982	+		CCNA_01391	0.84	-0.2
1,509,982	+		CCNA_01391	0.84	-1.4
1,509,982	+		CCNA_01391	0.84	+0.2