Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01252

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
1,378,230	+		CCNA_01250	0.81	+0.8
1,378,230	+		CCNA_01250	0.81	+1.6
1,378,230	+		CCNA_01250	0.81	-1.7
1,378,230	+		CCNA_01250	0.81	-0.7
1,378,230	+		CCNA_01250	0.81	+0.5
1,378,267	+		CCNA_01250	0.85	-0.4
1,378,325	-				-0.8
1,378,334	+				-1.6
1,378,342	-				+2.6
1,378,370	-				+1.0
1,378,384	+				-1.1
1,378,463	+				-1.7
1,378,463	+				-1.1
1,378,541	+		CCNA_01251	0.16	-1.2
1,378,550	-		CCNA_01251	0.17	-0.4
1,378,550	-		CCNA_01251	0.17	+2.6
1,378,551	+		CCNA_01251	0.17	-1.0
1,378,555	-		CCNA_01251	0.18	-2.0
1,378,566	+		CCNA_01251	0.19	-1.8
1,378,616	+		CCNA_01251	0.26	-0.7
1,378,646	-		CCNA_01251	0.30	-1.0
1,378,666	-		CCNA_01251	0.33	+1.6
1,378,723	+		CCNA_01251	0.40	-2.0
1,378,756	-		CCNA_01251	0.44	-1.3
1,378,761	+		CCNA_01251	0.45	+1.0
1,378,812	+		CCNA_01251	0.52	-2.0
1,378,812	+		CCNA_01251	0.52	+1.4
1,378,812	+		CCNA_01251	0.52	+1.6
1,378,820	-		CCNA_01251	0.53	+2.6
1,378,838	+		CCNA_01251	0.55	-2.5
1,378,936	+		CCNA_01251	0.68	-0.8
1,378,957	-		CCNA_01251	0.71	-2.6
1,378,959	+		CCNA_01251	0.71	-2.8
1,378,967	-				+2.6
1,379,035	-		CCNA_01251	0.81	+2.6
1,379,038	+		CCNA_01251	0.82	+1.0
1,379,122	+				-2.5
1,379,159	-				-2.5
1,379,179	+				+1.0
1,379,212	-				-0.4
1,379,237	-				-0.3
1,379,244	+				-1.0
1,379,270	+				+1.1
1,379,296	+				+0.8
1,379,296	+				+2.3
1,379,303	+				-1.9
1,379,304	-				+2.5
1,379,304	-				+3.1
1,379,304	-				+2.5
1,379,316	-				+2.9
1,379,337	-				+2.6
1,379,370	+				+0.8
1,379,378	+				+1.1
1,379,407	-		CCNA_01252	0.11	+3.2
1,379,451	-		CCNA_01252	0.13	+3.1
1,379,504	+		CCNA_01252	0.15	+1.8
1,379,504	+		CCNA_01252	0.15	+2.5
1,379,508	-		CCNA_01252	0.16	+3.1
1,379,509	+		CCNA_01252	0.16	+1.3
1,379,573	+		CCNA_01252	0.19	+2.3
1,379,617	-		CCNA_01252	0.21	+2.9
1,379,627	+		CCNA_01252	0.21	+1.9
1,379,685	+		CCNA_01252	0.24	+2.4
1,379,693	-		CCNA_01252	0.24	+3.2
1,379,693	-		CCNA_01252	0.24	+3.0
1,379,738	+		CCNA_01252	0.27	+2.6
1,379,779	+		CCNA_01252	0.28	+2.6
1,379,806	-		CCNA_01252	0.30	+3.2
1,379,813	+		CCNA_01252	0.30	+4.1
1,379,823	-		CCNA_01252	0.31	+2.7
1,379,848	-		CCNA_01252	0.32	+2.7
1,379,852	+		CCNA_01252	0.32	+3.5
1,379,852	+		CCNA_01252	0.32	+0.9
1,379,857	+		CCNA_01252	0.32	+1.5
1,379,857	+		CCNA_01252	0.32	+2.1
1,379,857	+		CCNA_01252	0.32	+1.5
1,379,857	+		CCNA_01252	0.32	+0.5
1,379,857	+		CCNA_01252	0.32	+3.1
1,379,865	-		CCNA_01252	0.33	+3.1
1,379,865	-		CCNA_01252	0.33	+3.2
1,379,865	-		CCNA_01252	0.33	+3.4
1,379,870	-		CCNA_01252	0.33	+3.5
1,379,893	-		CCNA_01252	0.34	+3.2
1,379,893	-		CCNA_01252	0.34	+2.9
1,379,901	-		CCNA_01252	0.34	+3.1
1,379,911	+		CCNA_01252	0.35	+2.4
1,379,938	+		CCNA_01252	0.36	+2.5
1,379,938	+		CCNA_01252	0.36	+2.8
1,379,946	-		CCNA_01252	0.36	+2.7
1,379,946	-		CCNA_01252	0.36	+3.1
1,379,946	-		CCNA_01252	0.36	+2.9
1,379,948	+		CCNA_01252	0.37	+1.9
1,379,985	+		CCNA_01252	0.38	+1.8
1,380,006	-		CCNA_01252	0.39	+3.0
1,380,108	+		CCNA_01252	0.44	+3.1
1,380,116	-		CCNA_01252	0.45	+2.2
1,380,116	-		CCNA_01252	0.45	+4.2
1,380,116	-		CCNA_01252	0.45	+2.8
1,380,133	+				-1.4
1,380,141	-		CCNA_01252	0.46	+2.4
1,380,177	-		CCNA_01252	0.47	+3.1
1,380,228	+		CCNA_01252	0.50	+0.9
1,380,236	-		CCNA_01252	0.50	+2.5
1,380,247	+		CCNA_01252	0.51	+2.5
1,380,255	-		CCNA_01252	0.51	+1.1
1,380,271	-		CCNA_01252	0.52	+2.7
1,380,295	-		CCNA_01252	0.53	+2.6
1,380,333	+		CCNA_01252	0.55	+2.8
1,380,367	+		CCNA_01252	0.56	+1.5
1,380,375	-		CCNA_01252	0.57	+3.0
1,380,375	-		CCNA_01252	0.57	+2.6
1,380,378	+		CCNA_01252	0.57	+2.7
1,380,379	+		CCNA_01252	0.57	+2.0
1,380,428	+		CCNA_01252	0.59	+0.4
1,380,436	-		CCNA_01252	0.60	+3.5
1,380,438	+		CCNA_01252	0.60	-0.8
1,380,446	-		CCNA_01252	0.60	+3.2
1,380,458	+		CCNA_01252	0.61	+2.7
1,380,471	+		CCNA_01252	0.61	+1.9
1,380,487	+		CCNA_01252	0.62	+2.5
1,380,492	+		CCNA_01252	0.62	+2.7
1,380,500	-		CCNA_01252	0.63	+3.4
1,380,512	+		CCNA_01252	0.63	+1.5
1,380,586	+		CCNA_01252	0.67	+2.2
1,380,586	+		CCNA_01252	0.67	+4.5
1,380,594	-		CCNA_01252	0.67	+3.3
1,380,605	-		CCNA_01252	0.68	+3.7
1,380,627	+		CCNA_01252	0.69	+3.1
1,380,630	-		CCNA_01252	0.69	+2.8
1,380,715	+		CCNA_01252	0.73	+2.8
1,380,723	+		CCNA_01252	0.73	+2.9
1,380,729	-		CCNA_01252	0.74	+2.8
1,380,766	-		CCNA_01252	0.75	+3.2
1,380,766	-		CCNA_01252	0.75	+2.4
1,380,782	-		CCNA_01252	0.76	+1.8
1,380,796	+		CCNA_01252	0.77	+0.3
1,380,796	+		CCNA_01252	0.77	+1.2
1,380,801	+		CCNA_01252	0.77	+2.9
1,380,801	+		CCNA_01252	0.77	+1.6
1,380,801	+		CCNA_01252	0.77	+2.0
1,380,801	+		CCNA_01252	0.77	+2.6
1,380,804	-		CCNA_01252	0.77	+3.0
1,380,804	-		CCNA_01252	0.77	+2.5
1,380,809	-		CCNA_01252	0.78	+3.3
1,380,809	-		CCNA_01252	0.78	+3.0
1,380,809	-		CCNA_01252	0.78	+2.5
1,380,809	-		CCNA_01252	0.78	+3.0
1,380,809	-		CCNA_01252	0.78	+1.8
1,380,809	-		CCNA_01252	0.78	+2.5
1,380,814	-		CCNA_01252	0.78	+2.6
1,380,841	-		CCNA_01252	0.79	+2.7
1,380,866	-		CCNA_01252	0.80	+3.9
1,380,868	+		CCNA_01252	0.80	+2.1
1,380,868	+		CCNA_01252	0.80	+0.7
1,380,868	+		CCNA_01252	0.80	+1.7
1,380,868	+		CCNA_01252	0.80	+1.6
1,380,876	-		CCNA_01252	0.81	+2.3
1,380,876	-		CCNA_01252	0.81	+3.1
1,380,893	-		CCNA_01252	0.82	+2.3
1,380,993	-		CCNA_01252	0.86	+3.1
1,381,034	+		CCNA_01252	0.88	+0.9
1,381,034	+		CCNA_01252	0.88	+1.4
1,381,038	-		CCNA_01252	0.88	+2.9
1,381,042	-		CCNA_01252	0.89	+3.2
1,381,042	-		CCNA_01252	0.89	+3.0
1,381,044	+		CCNA_01252	0.89	+2.4
1,381,044	+		CCNA_01252	0.89	+2.1
1,381,044	+		CCNA_01252	0.89	+2.0
1,381,044	+		CCNA_01252	0.89	+2.4
1,381,044	+		CCNA_01252	0.89	+2.6
1,381,044	+		CCNA_01252	0.89	+2.3
1,381,044	+		CCNA_01252	0.89	+1.1
1,381,052	-		CCNA_01252	0.89	+2.9
1,381,052	-		CCNA_01252	0.89	+3.0
1,381,052	-		CCNA_01252	0.89	+2.9
1,381,052	-		CCNA_01252	0.89	+2.7
1,381,052	-		CCNA_01252	0.89	+3.7
1,381,095	-				+2.4
1,381,099	+				+2.7
1,381,107	-				+2.6
1,381,107	-				+3.1
1,381,107	-				+2.8
1,381,120	+				+2.2
1,381,133	+				+1.9
1,381,155	-				+3.0
1,381,159	-				+1.2
1,381,164	-				+2.3
1,381,184	-				+2.8
1,381,188	+				+0.4
1,381,189	+				-0.4
1,381,189	-				+3.4
1,381,189	-				+3.0
1,381,189	-				+2.5
1,381,197	-				+2.3
1,381,216	-				+3.3
1,381,245	-				+2.7
1,381,273	-				+0.6
1,381,289	+				-1.2
1,381,291	+				+0.1
1,381,297	-				-0.8
1,381,297	-				-1.4
1,381,326	+				-1.7
1,381,394	-				-1.0
1,381,395	+				+0.1
1,381,402	-				-3.3
1,381,421	+				+0.7
1,381,421	+				+2.6
1,381,421	+				+0.9
1,381,421	+				+0.4
1,381,421	+				-3.2
1,381,429	-				-0.4
1,381,429	-				-1.5
1,381,429	-				+0.3
1,381,429	-				+1.6
1,381,429	-				+0.6
1,381,429	-				-0.2
1,381,465	+				-0.8
1,381,500	+				+0.7
1,381,548	+				+0.1