Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01204

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
1,329,892	+		CCNA_01203	0.53	-0.9
1,329,914	-		CCNA_01203	0.54	-0.1
1,329,926	-		CCNA_01203	0.55	+0.7
1,329,990	-		CCNA_01203	0.58	-1.1
1,330,045	-		CCNA_01203	0.61	+0.4
1,330,070	-		CCNA_01203	0.62	+0.6
1,330,070	-		CCNA_01203	0.62	-1.3
1,330,070	-		CCNA_01203	0.62	-0.1
1,330,070	-		CCNA_01203	0.62	+3.1
1,330,081	+		CCNA_01203	0.63	+0.0
1,330,081	+		CCNA_01203	0.63	-1.6
1,330,081	-		CCNA_01203	0.63	-0.1
1,330,089	-		CCNA_01203	0.63	-0.7
1,330,114	-		CCNA_01203	0.65	-0.2
1,330,114	-		CCNA_01203	0.65	-0.4
1,330,119	-		CCNA_01203	0.65	-0.1
1,330,134	+		CCNA_01203	0.66	-1.2
1,330,134	+		CCNA_01203	0.66	+1.6
1,330,134	+		CCNA_01203	0.66	-2.4
1,330,134	+		CCNA_01203	0.66	+2.6
1,330,134	+		CCNA_01203	0.66	+1.4
1,330,134	+		CCNA_01203	0.66	-1.5
1,330,134	+		CCNA_01203	0.66	-1.1
1,330,139	+		CCNA_01203	0.66	-1.2
1,330,142	-		CCNA_01203	0.66	-1.7
1,330,142	-		CCNA_01203	0.66	-2.3
1,330,142	-		CCNA_01203	0.66	+1.6
1,330,142	-		CCNA_01203	0.66	+0.2
1,330,204	+		CCNA_01203	0.69	+0.5
1,330,215	+		CCNA_01203	0.70	+0.3
1,330,215	+		CCNA_01203	0.70	+0.6
1,330,223	-		CCNA_01203	0.70	-1.3
1,330,223	-		CCNA_01203	0.70	-0.0
1,330,223	-		CCNA_01203	0.70	-2.9
1,330,255	+		CCNA_01203	0.72	+1.4
1,330,273	+		CCNA_01203	0.73	-0.8
1,330,273	-		CCNA_01203	0.73	+0.6
1,330,281	-		CCNA_01203	0.73	+0.6
1,330,311	+		CCNA_01203	0.74	-1.1
1,330,318	+		CCNA_01203	0.75	-2.0
1,330,319	-		CCNA_01203	0.75	+2.2
1,330,319	-		CCNA_01203	0.75	+0.5
1,330,396	-		CCNA_01203	0.79	+0.8
1,330,399	+		CCNA_01203	0.79	+1.0
1,330,400	+		CCNA_01203	0.79	-4.0
1,330,400	+		CCNA_01203	0.79	-2.9
1,330,419	-		CCNA_01203	0.80	-1.6
1,330,419	-		CCNA_01203	0.80	-1.3
1,330,421	+		CCNA_01203	0.80	+0.6
1,330,425	-		CCNA_01203	0.80	+0.3
1,330,461	+		CCNA_01203	0.82	-0.9
1,330,466	+		CCNA_01203	0.82	-1.0
1,330,466	+		CCNA_01203	0.82	+0.6
1,330,471	+		CCNA_01203	0.83	-0.2
1,330,474	-		CCNA_01203	0.83	-2.0
1,330,477	+		CCNA_01203	0.83	-0.4
1,330,479	-		CCNA_01203	0.83	+1.6
1,330,491	+		CCNA_01203	0.84	-0.7
1,330,571	+		CCNA_01203	0.88	-1.2
1,330,579	-		CCNA_01203	0.88	+1.0
1,330,579	-		CCNA_01203	0.88	+1.2
1,330,589	+		CCNA_01203	0.89	-1.6
1,330,613	-		CCNA_01203	0.90	+2.6
1,330,615	-		CCNA_01203	0.90	-0.1
1,330,625	-				+2.6
1,330,703	+				+1.9
1,330,703	+				-1.5
1,330,708	+				-0.9
1,330,711	-				-2.3
1,330,765	+				-0.4
1,330,787	-				-0.4
1,330,808	-				-0.6
1,330,823	+				+0.6
1,330,831	-				-1.6
1,330,874	+				-1.3
1,330,882	-				+1.2
1,330,898	+				-1.6
1,330,898	+				+1.6
1,330,906	-				-0.9
1,330,928	+				+1.1
1,330,928	+				-1.6
1,330,936	-				+1.5
1,330,938	+				+0.3
1,330,951	-				+2.6
1,330,964	+				+0.1
1,330,972	-				+0.7
1,330,997	-		CCNA_01204	0.11	-1.0
1,331,000	+		CCNA_01204	0.11	+0.3
1,331,024	-		CCNA_01204	0.14	+0.7
1,331,099	-		CCNA_01204	0.22	+1.1
1,331,133	-		CCNA_01204	0.26	+1.2
1,331,143	-		CCNA_01204	0.27	-1.7
1,331,172	-		CCNA_01204	0.30	+0.9
1,331,206	+		CCNA_01204	0.33	+0.7
1,331,214	-		CCNA_01204	0.34	-0.7
1,331,219	+		CCNA_01204	0.35	+1.4
1,331,274	-		CCNA_01204	0.40	+1.6
1,331,285	+		CCNA_01204	0.42	+0.6
1,331,304	+		CCNA_01204	0.44	-0.4
1,331,304	+		CCNA_01204	0.44	+0.1
1,331,304	+		CCNA_01204	0.44	-2.0
1,331,304	+		CCNA_01204	0.44	-2.5
1,331,312	-		CCNA_01204	0.44	+0.4
1,331,312	-		CCNA_01204	0.44	+1.6
1,331,312	-		CCNA_01204	0.44	+3.3
1,331,312	-		CCNA_01204	0.44	-0.5
1,331,312	-		CCNA_01204	0.44	+1.7
1,331,312	-		CCNA_01204	0.44	+0.8
1,331,330	+		CCNA_01204	0.46	-0.4
1,331,330	+		CCNA_01204	0.46	+0.3
1,331,343	+		CCNA_01204	0.48	+1.3
1,331,343	+		CCNA_01204	0.48	-1.0
1,331,351	-		CCNA_01204	0.49	+0.3
1,331,351	-		CCNA_01204	0.49	-3.4
1,331,381	-		CCNA_01204	0.52	-0.8
1,331,386	+		CCNA_01204	0.52	+1.6
1,331,389	-		CCNA_01204	0.53	+0.6
1,331,394	-		CCNA_01204	0.53	+0.3
1,331,397	+		CCNA_01204	0.53	+0.6
1,331,397	+		CCNA_01204	0.53	+0.3
1,331,405	-		CCNA_01204	0.54	+1.0
1,331,409	+		CCNA_01204	0.55	+1.5
1,331,409	+		CCNA_01204	0.55	+1.3
1,331,417	-		CCNA_01204	0.55	-1.8
1,331,423	+		CCNA_01204	0.56	+1.5
1,331,433	+		CCNA_01204	0.57	+1.4
1,331,433	+		CCNA_01204	0.57	+0.3
1,331,444	+		CCNA_01204	0.58	-1.1
1,331,444	+		CCNA_01204	0.58	-2.1
1,331,450	+		CCNA_01204	0.59	-0.6
1,331,488	+		CCNA_01204	0.63	-0.6
1,331,504	+		CCNA_01204	0.65	+0.1
1,331,504	+		CCNA_01204	0.65	+0.3
1,331,504	+		CCNA_01204	0.65	-0.2
1,331,519	+		CCNA_01204	0.66	-1.8
1,331,527	-		CCNA_01204	0.67	+2.5
1,331,529	+		CCNA_01204	0.67	+1.6
1,331,538	-		CCNA_01204	0.68	-1.9
1,331,563	-		CCNA_01204	0.71	+2.0
1,331,571	+		CCNA_01204	0.72	+2.0
1,331,577	-		CCNA_01204	0.72	+0.4
1,331,579	+		CCNA_01204	0.73	-1.5
1,331,587	-		CCNA_01204	0.73	+1.7
1,331,587	-		CCNA_01204	0.73	+1.4
1,331,589	-		CCNA_01204	0.74	+3.5
1,331,593	-		CCNA_01204	0.74	+1.2
1,331,605	+		CCNA_01204	0.75	+1.0
1,331,663	+		CCNA_01204	0.81	+2.6
1,331,706	-		CCNA_01204	0.86	+2.6
1,331,726	+		CCNA_01204	0.88	+1.9
1,331,726	+		CCNA_01204	0.88	-0.7
1,331,734	-		CCNA_01204	0.89	+1.8
1,331,741	+		CCNA_01204	0.90	-1.6
1,331,749	-				+2.6
1,331,749	-				+2.1
1,331,802	-				+1.7
1,331,852	+				-0.3
1,331,882	+				-0.9
1,331,895	-				-2.6
1,331,898	+				-0.8
1,331,898	+				-0.9
1,331,906	-				-0.9
1,331,906	-				-2.8
1,331,906	-				-0.9
1,331,906	-				+1.6
1,331,911	-				-0.7
1,331,979	+				+0.6
1,331,987	-				-0.2
1,332,003	+				-0.9
1,332,029	+				-2.6
1,332,029	+				-0.5
1,332,032	-				+0.0
1,332,032	-				-0.5
1,332,113	-		CCNA_01205	0.14	-0.9
1,332,123	+		CCNA_01205	0.15	+2.0
1,332,131	-		CCNA_01205	0.16	+0.1
1,332,133	+		CCNA_01205	0.16	+0.5
1,332,136	-		CCNA_01205	0.17	-1.5
1,332,140	+		CCNA_01205	0.17	-1.1
1,332,141	-		CCNA_01205	0.17	+0.0
1,332,141	-		CCNA_01205	0.17	-0.9
1,332,148	-		CCNA_01205	0.18	+2.6
1,332,148	-		CCNA_01205	0.18	+1.0
1,332,164	+		CCNA_01205	0.19	-0.9
1,332,164	+		CCNA_01205	0.19	-1.7
1,332,164	+		CCNA_01205	0.19	-0.4
1,332,169	+		CCNA_01205	0.20	-0.9
1,332,190	-		CCNA_01205	0.22	+1.2
1,332,199	+		CCNA_01205	0.23	+2.6
1,332,247	-		CCNA_01205	0.28	-0.7
1,332,248	+		CCNA_01205	0.28	+1.1
1,332,248	+		CCNA_01205	0.28	-1.0
1,332,250	-		CCNA_01205	0.28	-2.9
1,332,278	+				-1.0
1,332,281	-		CCNA_01205	0.31	+2.0
1,332,286	-		CCNA_01205	0.32	-1.9
1,332,286	-		CCNA_01205	0.32	-0.7
1,332,296	-		CCNA_01205	0.33	-2.1
1,332,296	-		CCNA_01205	0.33	-0.0
1,332,314	-		CCNA_01205	0.35	-0.2
1,332,334	+		CCNA_01205	0.37	-1.6
1,332,389	+		CCNA_01205	0.42	+0.3
1,332,389	+		CCNA_01205	0.42	-0.4
1,332,389	+		CCNA_01205	0.42	+4.9
1,332,389	+		CCNA_01205	0.42	-2.6
1,332,389	+		CCNA_01205	0.42	+2.6
1,332,397	-		CCNA_01205	0.43	+1.6
1,332,397	-		CCNA_01205	0.43	-0.7
1,332,397	-		CCNA_01205	0.43	-0.7
1,332,397	-		CCNA_01205	0.43	-1.2
1,332,397	-		CCNA_01205	0.43	-1.8
1,332,407	-		CCNA_01205	0.44	-1.0
1,332,427	+		CCNA_01205	0.46	-1.1
1,332,445	-		CCNA_01205	0.48	-0.2
1,332,449	+		CCNA_01205	0.48	-1.4
1,332,458	+		CCNA_01205	0.49	-0.7
1,332,466	-		CCNA_01205	0.50	-1.7
1,332,466	-		CCNA_01205	0.50	-0.9
1,332,517	+		CCNA_01205	0.55	+0.0
1,332,581	+		CCNA_01205	0.62	-0.2
1,332,608	-		CCNA_01205	0.64	-1.1
1,332,627	+		CCNA_01205	0.66	+0.2
1,332,675	-		CCNA_01205	0.71	+1.0
1,332,680	+		CCNA_01205	0.72	-1.2
1,332,683	+		CCNA_01205	0.72	-2.0
1,332,735	+		CCNA_01205	0.77	+2.6
1,332,768	-		CCNA_01205	0.81	-1.1
1,332,775	-		CCNA_01205	0.81	+0.3
1,332,790	+		CCNA_01205	0.83	+1.6
1,332,805	-		CCNA_01205	0.84	-0.9
1,332,807	+		CCNA_01205	0.85	-1.2
1,332,814	-		CCNA_01205	0.85	+3.6
1,332,815	-		CCNA_01205	0.85	-0.6
1,332,824	-		CCNA_01205	0.86	-0.9
1,332,824	-		CCNA_01205	0.86	-0.7