Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01165

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
1,281,185	+		CCNA_01164	0.50	+0.4
1,281,206	+		CCNA_01164	0.51	+1.7
1,281,243	-		CCNA_01164	0.53	+1.3
1,281,249	+		CCNA_01164	0.53	+1.8
1,281,258	+		CCNA_01164	0.53	+0.2
1,281,262	-		CCNA_01164	0.53	-0.1
1,281,278	+		CCNA_01164	0.54	+0.6
1,281,323	-		CCNA_01164	0.56	+2.6
1,281,325	+		CCNA_01164	0.57	+0.5
1,281,334	+		CCNA_01164	0.57	+1.0
1,281,334	+		CCNA_01164	0.57	+1.0
1,281,428	+		CCNA_01164	0.62	+3.2
1,281,532	-		CCNA_01164	0.67	+2.2
1,281,580	+		CCNA_01164	0.69	+2.3
1,281,591	+		CCNA_01164	0.70	+2.4
1,281,617	+		CCNA_01164	0.71	+1.2
1,281,648	-		CCNA_01164	0.73	+1.2
1,281,656	-		CCNA_01164	0.73	+1.3
1,281,705	-		CCNA_01164	0.75	+2.5
1,281,731	+		CCNA_01164	0.77	+1.2
1,281,735	+		CCNA_01164	0.77	+1.7
1,281,749	+		CCNA_01164	0.78	+1.6
1,281,757	-		CCNA_01164	0.78	-1.8
1,281,757	-		CCNA_01164	0.78	-0.3
1,281,757	-		CCNA_01164	0.78	+0.5
1,281,784	+		CCNA_01164	0.79	+1.3
1,281,792	-		CCNA_01164	0.80	-1.1
1,281,807	+		CCNA_01164	0.80	+1.6
1,281,826	+		CCNA_01164	0.81	+2.2
1,281,827	+		CCNA_01164	0.81	+2.2
1,281,827	+		CCNA_01164	0.81	+2.4
1,281,849	+		CCNA_01164	0.83	+1.5
1,281,880	-		CCNA_01164	0.84	-1.2
1,281,895	+		CCNA_01164	0.85	+2.1
1,281,923	+		CCNA_01164	0.86	+2.3
1,281,953	-		CCNA_01164	0.88	+0.6
1,281,966	+		CCNA_01164	0.88	+0.6
1,281,976	+		CCNA_01164	0.89	+2.0
1,281,976	+		CCNA_01164	0.89	+0.7
1,281,996	-		CCNA_01164	0.90	+2.3
1,282,000	+				+0.7
1,282,005	+				+1.8
1,282,008	-				-1.5
1,282,111	+				+2.1
1,282,114	-				+1.0
1,282,116	+				+0.8
1,282,157	-				+0.8
1,282,185	-				-0.7
1,282,187	+				+0.5
1,282,187	+				-1.1
1,282,195	-				+2.2
1,282,195	-				+1.3
1,282,220	+				+1.5
1,282,228	-				-1.2
1,282,235	+				+1.6
1,282,235	+				+1.5
1,282,243	-				-0.8
1,282,251	-				-0.2
1,282,288	-				-0.2
1,282,295	+				-1.5
1,282,329	+				+1.0
1,282,366	+				+0.8
1,282,391	-				-1.1
1,282,425	+		CCNA_01165	0.10	-3.1
1,282,446	+		CCNA_01165	0.11	+2.6
1,282,464	+		CCNA_01165	0.12	+2.3
1,282,533	+		CCNA_01165	0.14	+1.2
1,282,542	+		CCNA_01165	0.15	+1.1
1,282,640	+		CCNA_01165	0.19	-0.7
1,282,643	-		CCNA_01165	0.19	+1.2
1,282,648	-		CCNA_01165	0.19	-1.1
1,282,750	+		CCNA_01165	0.23	-1.6
1,282,761	+		CCNA_01165	0.24	-0.4
1,282,820	-		CCNA_01165	0.26	-0.6
1,282,836	+		CCNA_01165	0.27	+0.6
1,282,845	+		CCNA_01165	0.27	+1.3
1,282,852	+		CCNA_01165	0.28	-1.4
1,282,853	-		CCNA_01165	0.28	-1.3
1,282,853	-		CCNA_01165	0.28	+1.0
1,282,905	+		CCNA_01165	0.30	+5.1
1,282,905	+		CCNA_01165	0.30	+0.7
1,282,954	+		CCNA_01165	0.32	+1.3
1,282,975	+		CCNA_01165	0.33	-0.3
1,282,978	-		CCNA_01165	0.33	-2.7
1,282,980	+		CCNA_01165	0.33	+1.0
1,282,983	-		CCNA_01165	0.33	-2.3
1,283,051	-		CCNA_01165	0.36	+3.8
1,283,067	+		CCNA_01165	0.36	+1.0
1,283,095	+		CCNA_01165	0.38	+2.3
1,283,095	+		CCNA_01165	0.38	-0.9
1,283,095	+		CCNA_01165	0.38	+0.9
1,283,112	+		CCNA_01165	0.38	+1.2
1,283,172	-		CCNA_01165	0.41	-0.4
1,283,180	+		CCNA_01165	0.41	+0.6
1,283,188	+		CCNA_01165	0.41	+1.0
1,283,188	-		CCNA_01165	0.41	-1.0
1,283,190	+		CCNA_01165	0.41	+1.5
1,283,196	-		CCNA_01165	0.42	+1.0
1,283,229	+		CCNA_01165	0.43	+0.3
1,283,229	+		CCNA_01165	0.43	+2.1
1,283,229	+		CCNA_01165	0.43	-2.0
1,283,253	+		CCNA_01165	0.44	+1.0
1,283,286	+		CCNA_01165	0.45	+1.0
1,283,301	-		CCNA_01165	0.46	-2.1
1,283,373	+		CCNA_01165	0.49	-2.3
1,283,433	+		CCNA_01165	0.51	-0.1
1,283,444	+		CCNA_01165	0.52	+2.0
1,283,520	+		CCNA_01165	0.55	+0.6
1,283,520	+		CCNA_01165	0.55	-2.0
1,283,528	-		CCNA_01165	0.55	-1.6
1,283,566	+		CCNA_01165	0.57	-1.7
1,283,567	+		CCNA_01165	0.57	-1.1
1,283,574	-		CCNA_01165	0.57	+0.0
1,283,591	-		CCNA_01165	0.58	+1.7
1,283,603	+		CCNA_01165	0.58	+0.0
1,283,603	+		CCNA_01165	0.58	-1.0
1,283,603	+		CCNA_01165	0.58	+1.1
1,283,603	+		CCNA_01165	0.58	-1.3
1,283,603	+		CCNA_01165	0.58	-2.5
1,283,603	+		CCNA_01165	0.58	+2.0
1,283,603	+		CCNA_01165	0.58	-2.4
1,283,611	-		CCNA_01165	0.59	+0.6
1,283,622	+		CCNA_01165	0.59	+0.9
1,283,635	+		CCNA_01165	0.60	+0.4
1,283,658	+		CCNA_01165	0.61	+0.1
1,283,658	+		CCNA_01165	0.61	+2.0
1,283,789	+		CCNA_01165	0.66	-0.5
1,283,803	-		CCNA_01165	0.67	-1.9
1,283,816	+		CCNA_01165	0.67	+1.0
1,283,851	-		CCNA_01165	0.69	+0.6
1,283,862	+		CCNA_01165	0.69	+0.9
1,283,862	+		CCNA_01165	0.69	-0.3
1,283,862	+		CCNA_01165	0.69	+0.0
1,283,980	+		CCNA_01165	0.74	+3.6
1,283,998	+		CCNA_01165	0.75	-2.1
1,284,094	-				+2.6
1,284,094	-		CCNA_01165	0.78	+2.6
1,284,096	+		CCNA_01165	0.79	+0.8
1,284,096	+		CCNA_01165	0.79	+1.1
1,284,096	+		CCNA_01165	0.79	+1.6
1,284,096	+		CCNA_01165	0.79	-0.8
1,284,111	+		CCNA_01165	0.79	-0.3
1,284,121	-		CCNA_01165	0.80	-0.5
1,284,123	+		CCNA_01165	0.80	-0.9
1,284,144	+		CCNA_01165	0.81	-2.3
1,284,144	+		CCNA_01165	0.81	-0.2
1,284,144	+		CCNA_01165	0.81	+2.9
1,284,152	-		CCNA_01165	0.81	+0.0
1,284,152	-		CCNA_01165	0.81	-2.6
1,284,197	+		CCNA_01165	0.83	+1.1
1,284,204	+		CCNA_01165	0.83	-1.4
1,284,295	-		CCNA_01165	0.87	+1.5
1,284,331	+		CCNA_01165	0.88	-0.7
1,284,370	+		CCNA_01165	0.90	+1.3
1,284,427	-				-2.3
1,284,503	+				-0.8
1,284,504	+				+0.9
1,284,514	-				-2.7
1,284,522	+				-1.1
1,284,546	+				-2.6
1,284,640	+				+1.7
1,284,645	+				-1.0
1,284,662	-				-2.0
1,284,670	+				-0.5
1,284,670	+				-0.2
1,284,677	+				+0.0
1,284,678	-				+0.0
1,284,678	-				-0.7
1,284,710	-		CCNA_01166	0.11	+0.3
1,284,744	-		CCNA_01166	0.15	-2.0
1,284,827	+		CCNA_01166	0.25	-1.7
1,284,838	+		CCNA_01166	0.27	+0.7
1,284,846	-		CCNA_01166	0.28	+1.0
1,284,885	+		CCNA_01166	0.33	-1.3
1,284,885	+		CCNA_01166	0.33	+1.1
1,284,912	+		CCNA_01166	0.36	+1.3
1,284,920	-		CCNA_01166	0.37	+2.6
1,284,962	-		CCNA_01166	0.42	-1.2
1,284,967	-		CCNA_01166	0.43	+3.5
1,285,002	+		CCNA_01166	0.47	+0.3
1,285,010	+		CCNA_01166	0.48	+1.3
1,285,037	+		CCNA_01166	0.52	+2.8
1,285,053	-		CCNA_01166	0.54	-0.6
1,285,085	-		CCNA_01166	0.58	-4.5
1,285,131	-		CCNA_01166	0.64	+1.7
1,285,138	+		CCNA_01166	0.64	-0.4
1,285,283	+		CCNA_01166	0.83	+1.0
1,285,291	-		CCNA_01166	0.84	-1.7
1,285,293	+		CCNA_01166	0.84	-3.9
1,285,301	-		CCNA_01166	0.85	-2.1
1,285,324	+		CCNA_01166	0.88	+1.7
1,285,378	-				+1.4
1,285,401	-				-0.8
1,285,428	+				+2.2
1,285,436	-				+0.3
1,285,436	-				+1.5
1,285,436	-				-2.8
1,285,436	-				+1.0
1,285,443	+				-1.5
1,285,466	-				+0.2
1,285,502	-				-1.9
1,285,528	-				-0.4
1,285,538	-		CCNA_01167	0.10	-1.7
1,285,538	-		CCNA_01167	0.10	-2.7
1,285,538	-		CCNA_01167	0.10	+0.1
1,285,558	-		CCNA_01167	0.12	+0.0
1,285,599	+		CCNA_01167	0.15	+0.3