Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01028

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
1,113,033	+		CCNA_01026	0.42	-3.1
1,113,042	-		CCNA_01026	0.43	-0.4
1,113,042	-		CCNA_01026	0.43	+0.7
1,113,042	-		CCNA_01026	0.43	+1.0
1,113,091	+		CCNA_01026	0.50	-1.8
1,113,091	+		CCNA_01026	0.50	-2.3
1,113,092	-		CCNA_01026	0.50	-0.3
1,113,096	+		CCNA_01026	0.51	+0.1
1,113,099	-		CCNA_01026	0.51	-0.3
1,113,101	+		CCNA_01026	0.51	-1.9
1,113,133	+		CCNA_01026	0.56	-1.8
1,113,133	+		CCNA_01026	0.56	-2.1
1,113,141	-		CCNA_01026	0.57	-0.9
1,113,143	-		CCNA_01026	0.57	+0.8
1,113,146	+		CCNA_01026	0.58	+0.6
1,113,154	-		CCNA_01026	0.59	-0.4
1,113,154	-		CCNA_01026	0.59	+0.0
1,113,156	+		CCNA_01026	0.59	-1.5
1,113,157	+		CCNA_01026	0.59	-2.1
1,113,180	+		CCNA_01026	0.62	+1.4
1,113,193	+		CCNA_01026	0.64	-0.2
1,113,200	+		CCNA_01026	0.65	-2.2
1,113,240	+		CCNA_01026	0.71	+0.6
1,113,251	+		CCNA_01026	0.72	-1.1
1,113,253	-		CCNA_01026	0.72	-1.5
1,113,253	-		CCNA_01026	0.72	+3.2
1,113,253	-		CCNA_01026	0.72	-2.5
1,113,283	+		CCNA_01026	0.77	-1.5
1,113,334	-		CCNA_01026	0.84	-0.2
1,113,359	-		CCNA_01026	0.87	+0.2
1,113,396	+				-1.2
1,113,407	+				-1.8
1,113,417	+				-0.2
1,113,480	+				+0.5
1,113,503	+				-1.9
1,113,510	+				-1.1
1,113,511	-				-1.7
1,113,518	-				-0.8
1,113,518	-				+2.6
1,113,538	-				-1.0
1,113,558	+				-0.4
1,113,572	+				+0.6
1,113,576	-				-0.2
1,113,580	-				-0.4
1,113,584	+				-3.0
1,113,598	+				-1.8
1,113,606	+				-0.5
1,113,606	+				+0.1
1,113,683	+				+0.3
1,113,689	+		CCNA_01027	0.11	-1.5
1,113,689	+		CCNA_01027	0.11	+1.1
1,113,701	+		CCNA_01027	0.14	-1.2
1,113,701	+		CCNA_01027	0.14	+1.6
1,113,701	+				-0.2
1,113,701	+		CCNA_01027	0.14	+0.1
1,113,701	+		CCNA_01027	0.14	+0.5
1,113,701	+		CCNA_01027	0.14	+0.8
1,113,711	+		CCNA_01027	0.17	+0.1
1,113,720	-		CCNA_01027	0.20	+0.3
1,113,751	+		CCNA_01027	0.28	-2.1
1,113,763	+				+1.2
1,113,770	-		CCNA_01027	0.33	-0.5
1,113,776	-		CCNA_01027	0.35	-1.5
1,113,792	+		CCNA_01027	0.39	+0.2
1,113,828	+		CCNA_01027	0.49	-0.2
1,113,848	+		CCNA_01027	0.55	-1.5
1,113,856	-		CCNA_01027	0.57	-1.8
1,113,871	-		CCNA_01027	0.61	-3.0
1,113,899	+		CCNA_01027	0.69	-0.4
1,113,907	+		CCNA_01027	0.71	-1.3
1,113,907	+		CCNA_01027	0.71	+2.6
1,113,927	-		CCNA_01027	0.76	+0.7
1,113,927	-		CCNA_01027	0.76	-0.4
1,113,937	-		CCNA_01027	0.79	-2.5
1,113,958	-		CCNA_01027	0.85	-0.7
1,113,958	-		CCNA_01027	0.85	+0.2
1,113,981	+				-0.5
1,113,981	+				+2.6
1,113,981	+				-1.2
1,113,988	+				-0.8
1,113,989	-				-2.2
1,114,019	+				+1.0
1,114,019	+				-1.0
1,114,029	-				+0.6
1,114,070	+				-1.2
1,114,083	-				+1.6
1,114,115	+				-1.5
1,114,115	+				+2.1
1,114,115	+				-3.2
1,114,120	+				-1.5
1,114,121	+				+2.6
1,114,123	-				-0.8
1,114,123	-				+2.6
1,114,184	+				-3.2
1,114,187	+				-1.2
1,114,200	-		CCNA_01028	0.10	-1.1
1,114,208	+		CCNA_01028	0.11	-0.6
1,114,218	+		CCNA_01028	0.12	+0.3
1,114,243	+		CCNA_01028	0.13	+1.0
1,114,253	+		CCNA_01028	0.14	+0.0
1,114,253	+		CCNA_01028	0.14	-1.4
1,114,253	+		CCNA_01028	0.14	-0.8
1,114,253	+		CCNA_01028	0.14	-1.5
1,114,253	+		CCNA_01028	0.14	-2.0
1,114,253	+		CCNA_01028	0.14	-1.4
1,114,253	+		CCNA_01028	0.14	-0.3
1,114,253	+		CCNA_01028	0.14	-1.9
1,114,253	+		CCNA_01028	0.14	+0.5
1,114,254	-		CCNA_01028	0.14	-0.7
1,114,261	-		CCNA_01028	0.14	-1.3
1,114,261	-		CCNA_01028	0.14	+0.1
1,114,261	-		CCNA_01028	0.14	-1.3
1,114,261	-		CCNA_01028	0.14	-1.1
1,114,261	-		CCNA_01028	0.14	+1.0
1,114,261	-		CCNA_01028	0.14	+2.4
1,114,261	-		CCNA_01028	0.14	-1.2
1,114,261	-		CCNA_01028	0.14	+0.3
1,114,261	-		CCNA_01028	0.14	-1.3
1,114,261	-		CCNA_01028	0.14	-0.7
1,114,263	+		CCNA_01028	0.14	+2.2
1,114,322	+		CCNA_01028	0.18	-0.4
1,114,329	+		CCNA_01028	0.18	-1.6
1,114,337	-		CCNA_01028	0.19	+2.6
1,114,337	-		CCNA_01028	0.19	+0.3
1,114,337	-		CCNA_01028	0.19	-1.2
1,114,344	+		CCNA_01028	0.19	-0.2
1,114,344	+		CCNA_01028	0.19	-1.0
1,114,344	+		CCNA_01028	0.19	+0.9
1,114,352	+		CCNA_01028	0.20	-2.1
1,114,352	-		CCNA_01028	0.20	+0.6
1,114,352	-		CCNA_01028	0.20	-1.4
1,114,352	-		CCNA_01028	0.20	+1.6
1,114,360	-		CCNA_01028	0.20	-0.2
1,114,370	-		CCNA_01028	0.21	-0.3
1,114,371	+		CCNA_01028	0.21	-2.1
1,114,403	+		CCNA_01028	0.23	-1.6
1,114,418	+		CCNA_01028	0.24	-1.8
1,114,441	-		CCNA_01028	0.25	-1.5
1,114,460	+		CCNA_01028	0.27	-3.5
1,114,461	-		CCNA_01028	0.27	+0.8
1,114,468	-		CCNA_01028	0.27	-0.2
1,114,538	-		CCNA_01028	0.31	+1.0
1,114,548	-		CCNA_01028	0.32	-2.5
1,114,550	+		CCNA_01028	0.32	+1.3
1,114,565	+		CCNA_01028	0.33	+0.6
1,114,565	+		CCNA_01028	0.33	-1.0
1,114,635	+		CCNA_01028	0.37	-1.0
1,114,635	+		CCNA_01028	0.37	-1.1
1,114,635	+		CCNA_01028	0.37	+1.0
1,114,635	+		CCNA_01028	0.37	+2.6
1,114,635	+		CCNA_01028	0.37	-1.4
1,114,635	+		CCNA_01028	0.37	-1.5
1,114,635	+		CCNA_01028	0.37	-0.6
1,114,635	+		CCNA_01028	0.37	-0.5
1,114,643	-		CCNA_01028	0.38	-1.1
1,114,643	-		CCNA_01028	0.38	-1.7
1,114,643	-		CCNA_01028	0.38	-0.6
1,114,643	-		CCNA_01028	0.38	-3.5
1,114,643	-		CCNA_01028	0.38	-1.0
1,114,643	-		CCNA_01028	0.38	-1.7
1,114,643	-		CCNA_01028	0.38	-0.8
1,114,643	-		CCNA_01028	0.38	-1.8
1,114,645	+		CCNA_01028	0.38	-1.3
1,114,645	+		CCNA_01028	0.38	-0.3
1,114,659	-		CCNA_01028	0.39	-1.8
1,114,665	+		CCNA_01028	0.39	-0.4
1,114,695	-		CCNA_01028	0.41	+1.6
1,114,741	-		CCNA_01028	0.44	-0.8
1,114,759	+		CCNA_01028	0.45	+1.1
1,114,766	+		CCNA_01028	0.46	+0.3
1,114,774	-		CCNA_01028	0.46	-0.8
1,114,775	+		CCNA_01028	0.46	+0.2
1,114,868	+		CCNA_01028	0.52	-0.0
1,114,868	+		CCNA_01028	0.52	-0.2
1,114,871	-		CCNA_01028	0.52	-1.2
1,114,879	+		CCNA_01028	0.53	-1.5
1,114,887	-		CCNA_01028	0.53	-0.3
1,114,912	+		CCNA_01028	0.55	+0.4
1,114,912	+		CCNA_01028	0.55	-0.1
1,114,919	+		CCNA_01028	0.55	-1.2
1,114,941	+		CCNA_01028	0.56	-1.0
1,114,981	+		CCNA_01028	0.59	+1.2
1,115,007	-		CCNA_01028	0.60	+1.9
1,115,007	-		CCNA_01028	0.60	-0.7
1,115,012	+		CCNA_01028	0.61	-1.8
1,115,081	+		CCNA_01028	0.65	-3.0
1,115,094	+		CCNA_01028	0.66	-1.1
1,115,101	+		CCNA_01028	0.66	+0.2
1,115,154	-		CCNA_01028	0.70	+1.4
1,115,154	-		CCNA_01028	0.70	-1.0
1,115,154	-		CCNA_01028	0.70	-2.2
1,115,173	+		CCNA_01028	0.71	+0.7
1,115,174	+		CCNA_01028	0.71	-0.2
1,115,174	+		CCNA_01028	0.71	-2.6
1,115,182	-		CCNA_01028	0.71	-1.7
1,115,191	+		CCNA_01028	0.72	-1.9
1,115,191	+		CCNA_01028	0.72	-0.6
1,115,191	+		CCNA_01028	0.72	-2.5
1,115,191	+		CCNA_01028	0.72	-0.7
1,115,191	+		CCNA_01028	0.72	-1.3
1,115,191	+		CCNA_01028	0.72	-1.5
1,115,191	+		CCNA_01028	0.72	+1.0
1,115,191	+		CCNA_01028	0.72	-0.4
1,115,191	+		CCNA_01028	0.72	+1.5
1,115,191	+		CCNA_01028	0.72	+1.0
1,115,191	+				-3.0
1,115,199	-		CCNA_01028	0.72	+0.1
1,115,199	-		CCNA_01028	0.72	-2.3
1,115,199	-		CCNA_01028	0.72	-1.5
1,115,199	-		CCNA_01028	0.72	+0.6
1,115,199	-		CCNA_01028	0.72	-1.7
1,115,199	-		CCNA_01028	0.72	+0.6
1,115,199	-		CCNA_01028	0.72	+3.1
1,115,199	-		CCNA_01028	0.72	+0.3
1,115,199	-		CCNA_01028	0.72	-0.6
1,115,207	+		CCNA_01028	0.73	+0.3
1,115,240	+		CCNA_01028	0.75	-2.1
1,115,240	+		CCNA_01028	0.75	+0.9
1,115,240	+		CCNA_01028	0.75	-0.1
1,115,240	+		CCNA_01028	0.75	-0.3
1,115,240	+		CCNA_01028	0.75	-0.4
1,115,240	+		CCNA_01028	0.75	-0.6
1,115,240	+		CCNA_01028	0.75	-0.1
1,115,240	+		CCNA_01028	0.75	-1.9
1,115,240	+		CCNA_01028	0.75	+0.6
1,115,248	-		CCNA_01028	0.75	-1.4
1,115,248	-		CCNA_01028	0.75	-1.9
1,115,248	-		CCNA_01028	0.75	+1.6
1,115,248	-		CCNA_01028	0.75	+1.6
1,115,264	+		CCNA_01028	0.76	+0.7
1,115,264	+		CCNA_01028	0.76	-0.4
1,115,272	-		CCNA_01028	0.77	-1.8
1,115,272	-		CCNA_01028	0.77	+1.6
1,115,275	+		CCNA_01028	0.77	+0.7
1,115,280	+		CCNA_01028	0.77	-1.3
1,115,320	+		CCNA_01028	0.80	-2.9
1,115,320	+		CCNA_01028	0.80	-0.8
1,115,320	+		CCNA_01028	0.80	-0.7
1,115,320	+		CCNA_01028	0.80	-1.6
1,115,320	+		CCNA_01028	0.80	-0.7
1,115,320	+		CCNA_01028	0.80	+0.7
1,115,323	-		CCNA_01028	0.80	+0.5
1,115,328	-		CCNA_01028	0.80	+0.3
1,115,328	-		CCNA_01028	0.80	+0.7
1,115,359	-		CCNA_01028	0.82	+0.0
1,115,361	-		CCNA_01028	0.82	-1.5
1,115,376	+		CCNA_01028	0.83	-2.0
1,115,395	+		CCNA_01028	0.85	-0.6
1,115,461	+		CCNA_01028	0.89	-0.4
1,115,481	+		CCNA_01028	0.90	+3.4
1,115,489	-				-0.4
1,115,491	+				+0.2
1,115,501	+				+0.6
1,115,501	+				-1.8
1,115,522	+				+0.3
1,115,540	-				-2.2
1,115,579	-				-0.7
1,115,588	+				+1.0
1,115,713	+				-3.1
1,115,716	-				-1.5
1,115,722	-				+0.9
1,115,754	-				-0.7
1,115,764	-				+0.1
1,115,768	-				-2.1
1,115,771	+				-0.2
1,115,771	+				-0.2
1,115,779	-				+0.5
1,115,779	-				+0.9
1,115,779	-				+0.4
1,115,835	+				+2.6
1,115,872	+				-1.6
1,115,872	+				-1.4
1,115,872	+				-1.5
1,115,880	-				-0.8
1,115,895	+				-3.0
1,115,903	-				-1.1
1,115,921	+				-1.5
1,115,929	-				-1.4
1,115,961	+				-0.4
1,115,961	+				-0.8
1,115,995	-				-0.1
1,115,995	-				-0.0
1,116,002	-				-0.3
1,116,018	+				+1.6
1,116,023	+				-1.6
1,116,031	-				+0.0
1,116,032	+				-0.6
1,116,040	-				-1.5
1,116,092	-		CCNA_01029	0.12	+3.6
1,116,114	+		CCNA_01029	0.12	-0.0
1,116,125	+		CCNA_01029	0.13	-0.3
1,116,129	-		CCNA_01029	0.13	+0.8
1,116,146	+		CCNA_01029	0.13	-0.3
1,116,146	-		CCNA_01029	0.13	+0.7
1,116,154	-		CCNA_01029	0.14	+0.3
1,116,155	-		CCNA_01029	0.14	-1.3
1,116,155	-		CCNA_01029	0.14	+2.2
1,116,166	-		CCNA_01029	0.14	-0.1
1,116,172	+		CCNA_01029	0.14	-1.9
1,116,252	+		CCNA_01029	0.17	-0.1
1,116,284	-		CCNA_01029	0.18	+0.4
1,116,286	-		CCNA_01029	0.18	+0.3
1,116,304	-		CCNA_01029	0.19	+1.2
1,116,304	-		CCNA_01029	0.19	-0.6
1,116,317	-		CCNA_01029	0.19	+0.9
1,116,317	-		CCNA_01029	0.19	-1.0
1,116,360	+		CCNA_01029	0.20	+2.7
1,116,360	+		CCNA_01029	0.20	-0.3
1,116,368	-		CCNA_01029	0.21	-0.8
1,116,382	+		CCNA_01029	0.21	+0.7
1,116,390	-		CCNA_01029	0.21	+1.0
1,116,412	+		CCNA_01029	0.22	-0.1
1,116,447	+		CCNA_01029	0.23	-0.2
1,116,450	-		CCNA_01029	0.23	-0.9
1,116,459	+		CCNA_01029	0.24	+0.1
1,116,500	-		CCNA_01029	0.25	+1.0
1,116,542	-		CCNA_01029	0.26	+0.3
1,116,587	-		CCNA_01029	0.28	-2.4
1,116,614	+		CCNA_01029	0.29	-1.8
1,116,632	-		CCNA_01029	0.29	-1.8