Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01025

Experiment: PYE 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 28 days
1,111,144	+		CCNA_01023	0.80	-0.5
1,111,152	-		CCNA_01023	0.80	+0.5
1,111,160	+		CCNA_01023	0.81	-1.9
1,111,168	-		CCNA_01023	0.81	+0.0
1,111,182	+		CCNA_01023	0.82	-0.3
1,111,182	+		CCNA_01023	0.82	-1.4
1,111,182	+		CCNA_01023	0.82	+0.6
1,111,185	-		CCNA_01023	0.82	-1.7
1,111,188	+		CCNA_01023	0.83	+1.6
1,111,188	+		CCNA_01023	0.83	+0.3
1,111,190	-		CCNA_01023	0.83	-1.4
1,111,190	-		CCNA_01023	0.83	-1.7
1,111,190	-		CCNA_01023	0.83	-0.3
1,111,196	-		CCNA_01023	0.83	-1.8
1,111,196	-		CCNA_01023	0.83	-0.2
1,111,197	-		CCNA_01023	0.83	-2.2
1,111,257	+		CCNA_01023	0.87	+0.2
1,111,259	+		CCNA_01023	0.87	+0.5
1,111,265	-		CCNA_01023	0.87	+4.2
1,111,265	-		CCNA_01023	0.87	+6.3
1,111,265	-		CCNA_01023	0.87	+1.1
1,111,265	-		CCNA_01023	0.87	+1.9
1,111,267	-		CCNA_01023	0.88	+0.5
1,111,299	-		CCNA_01023	0.90	+0.2
1,111,301	-		CCNA_01023	0.90	-0.3
1,111,301	-		CCNA_01023	0.90	-0.2
1,111,321	+				-0.3
1,111,328	+				+0.0
1,111,328	+				-1.7
1,111,328	+				-2.4
1,111,328	+				-0.3
1,111,335	-				+0.5
1,111,336	-				+0.8
1,111,336	-				+0.6
1,111,336	-				-0.9
1,111,336	-				-0.6
1,111,336	-				+1.0
1,111,336	-				+0.8
1,111,348	+				+3.1
1,111,370	-				+0.8
1,111,425	+				-1.2
1,111,440	+				+1.0
1,111,460	-				+0.4
1,111,474	+				-0.5
1,111,476	-				+0.5
1,111,504	-				+0.9
1,111,511	-				+0.9
1,111,529	+				-0.5
1,111,537	-				+1.1
1,111,537	-				+0.2
1,111,546	-				-0.8
1,111,579	+				+0.3
1,111,613	-				-0.4
1,111,613	-				+0.9
1,111,660	+				-0.8
1,111,660	+				+0.0
1,111,660	+				-0.7
1,111,660	+				-0.4
1,111,660	+				+1.6
1,111,660	+				+0.3
1,111,668	-		CCNA_01024	0.10	-0.1
1,111,668	-		CCNA_01024	0.10	+1.5
1,111,668	-		CCNA_01024	0.10	+0.9
1,111,668	-		CCNA_01024	0.10	+0.6
1,111,670	+		CCNA_01024	0.11	+1.0
1,111,712	+		CCNA_01024	0.19	+0.7
1,111,788	+		CCNA_01024	0.35	+3.6
1,111,791	-		CCNA_01024	0.35	+0.1
1,111,791	-		CCNA_01024	0.35	+1.6
1,111,791	-		CCNA_01024	0.35	+0.3
1,111,791	-		CCNA_01024	0.35	+0.6
1,111,837	+		CCNA_01024	0.44	-1.0
1,111,844	+		CCNA_01024	0.46	+1.0
1,111,845	-		CCNA_01024	0.46	+0.9
1,111,847	-		CCNA_01024	0.46	+0.3
1,111,849	+		CCNA_01024	0.47	-0.4
1,111,857	-		CCNA_01024	0.48	+1.1
1,111,857	-		CCNA_01024	0.48	+1.3
1,111,857	-		CCNA_01024	0.48	+1.7
1,111,876	-		CCNA_01024	0.52	-0.1
1,111,881	-		CCNA_01024	0.53	+0.8
1,111,881	-		CCNA_01024	0.53	-0.2
1,111,881	-		CCNA_01024	0.53	+0.9
1,111,881	-		CCNA_01024	0.53	+0.6
1,111,881	-		CCNA_01024	0.53	+1.3
1,111,881	-		CCNA_01024	0.53	+1.2
1,111,915	+		CCNA_01024	0.60	-0.7
1,111,916	+		CCNA_01024	0.60	+0.3
1,111,921	-		CCNA_01024	0.61	+0.5
1,111,923	-		CCNA_01024	0.62	-0.4
1,111,931	-		CCNA_01024	0.63	+1.1
1,111,963	+		CCNA_01024	0.70	+0.6
1,111,963	+		CCNA_01024	0.70	+2.6
1,111,971	-		CCNA_01024	0.72	+0.4
1,111,971	-		CCNA_01024	0.72	-0.4
1,111,971	-		CCNA_01024	0.72	+1.5
1,111,971	-		CCNA_01024	0.72	+0.9
1,111,971	-		CCNA_01024	0.72	+1.6
1,111,971	-		CCNA_01024	0.72	+0.7
1,111,971	-		CCNA_01024	0.72	+0.2
1,112,028	+		CCNA_01024	0.83	-1.2
1,112,036	-		CCNA_01024	0.85	+0.7
1,112,036	-		CCNA_01024	0.85	+1.1
1,112,036	-		CCNA_01024	0.85	+1.0
1,112,036	-		CCNA_01024	0.85	+1.0
1,112,036	-		CCNA_01024	0.85	-0.1
1,112,056	-		CCNA_01024	0.89	+1.5
1,112,103	+				-1.4
1,112,106	-				+1.5
1,112,109	-				+1.1
1,112,202	-		CCNA_01025	0.12	+0.5
1,112,257	-		CCNA_01025	0.21	+0.7
1,112,317	-		CCNA_01025	0.31	+1.1
1,112,346	+		CCNA_01025	0.36	-1.3
1,112,355	-		CCNA_01025	0.37	+0.7
1,112,377	+		CCNA_01025	0.41	+2.6
1,112,385	-		CCNA_01025	0.42	+1.6
1,112,385	-		CCNA_01025	0.42	-1.0
1,112,385	-		CCNA_01025	0.42	+0.8
1,112,389	+		CCNA_01025	0.42	-2.6
1,112,389	+		CCNA_01025	0.42	+1.0
1,112,397	-		CCNA_01025	0.44	+1.0
1,112,397	-		CCNA_01025	0.44	+1.8
1,112,397	-		CCNA_01025	0.44	+2.5
1,112,404	+		CCNA_01025	0.45	+0.0
1,112,407	-		CCNA_01025	0.45	+1.2
1,112,437	-		CCNA_01025	0.50	+1.1
1,112,461	-		CCNA_01025	0.54	+1.1
1,112,500	+		CCNA_01025	0.60	+2.6
1,112,504	-		CCNA_01025	0.61	+0.3
1,112,508	-		CCNA_01025	0.62	+0.6
1,112,515	+		CCNA_01025	0.63	-1.4
1,112,517	+		CCNA_01025	0.63	-0.7
1,112,662	+		CCNA_01025	0.86	+1.0
1,112,675	-		CCNA_01025	0.88	+1.8
1,112,675	-		CCNA_01025	0.88	-0.4
1,112,675	-		CCNA_01025	0.88	-2.1
1,112,675	-		CCNA_01025	0.88	+0.7
1,112,675	-		CCNA_01025	0.88	+1.4
1,112,675	-		CCNA_01025	0.88	+0.5
1,112,675	-		CCNA_01025	0.88	+1.4
1,112,677	-		CCNA_01025	0.89	+0.2
1,112,677	-		CCNA_01025	0.89	+1.7
1,112,688	-				+1.3
1,112,700	-				+0.7
1,112,724	-				+1.8
1,112,784	+				+0.0
1,112,792	-				+1.0
1,112,818	+		CCNA_01026	0.12	-0.2
1,112,826	-		CCNA_01026	0.13	+0.6
1,112,875	+		CCNA_01026	0.20	+1.6
1,112,883	+		CCNA_01026	0.21	+0.2
1,112,883	-		CCNA_01026	0.21	+0.2
1,112,970	-		CCNA_01026	0.33	-0.8
1,112,975	-		CCNA_01026	0.34	-1.1
1,112,975	-		CCNA_01026	0.34	+1.0
1,112,997	-		CCNA_01026	0.37	+0.6
1,113,033	+		CCNA_01026	0.42	-3.1
1,113,042	-		CCNA_01026	0.43	-0.4
1,113,042	-		CCNA_01026	0.43	+0.7
1,113,042	-		CCNA_01026	0.43	+1.0
1,113,091	+		CCNA_01026	0.50	-1.8
1,113,091	+		CCNA_01026	0.50	-2.3
1,113,092	-		CCNA_01026	0.50	-0.3
1,113,096	+		CCNA_01026	0.51	+0.1
1,113,099	-		CCNA_01026	0.51	-0.3
1,113,101	+		CCNA_01026	0.51	-1.9
1,113,133	+		CCNA_01026	0.56	-1.8
1,113,133	+		CCNA_01026	0.56	-2.1
1,113,141	-		CCNA_01026	0.57	-0.9
1,113,143	-		CCNA_01026	0.57	+0.8
1,113,146	+		CCNA_01026	0.58	+0.6
1,113,154	-		CCNA_01026	0.59	-0.4
1,113,154	-		CCNA_01026	0.59	+0.0
1,113,156	+		CCNA_01026	0.59	-1.5
1,113,157	+		CCNA_01026	0.59	-2.1
1,113,180	+		CCNA_01026	0.62	+1.4
1,113,193	+		CCNA_01026	0.64	-0.2
1,113,200	+		CCNA_01026	0.65	-2.2
1,113,240	+		CCNA_01026	0.71	+0.6
1,113,251	+		CCNA_01026	0.72	-1.1
1,113,253	-		CCNA_01026	0.72	-1.5
1,113,253	-		CCNA_01026	0.72	+3.2
1,113,253	-		CCNA_01026	0.72	-2.5
1,113,283	+		CCNA_01026	0.77	-1.5
1,113,334	-		CCNA_01026	0.84	-0.2
1,113,359	-		CCNA_01026	0.87	+0.2
1,113,396	+				-1.2
1,113,407	+				-1.8
1,113,417	+				-0.2
1,113,480	+				+0.5
1,113,503	+				-1.9
1,113,510	+				-1.1
1,113,511	-				-1.7
1,113,518	-				-0.8
1,113,518	-				+2.6
1,113,538	-				-1.0
1,113,558	+				-0.4
1,113,572	+				+0.6
1,113,576	-				-0.2
1,113,580	-				-0.4
1,113,584	+				-3.0
1,113,598	+				-1.8
1,113,606	+				-0.5
1,113,606	+				+0.1
1,113,683	+				+0.3
1,113,689	+		CCNA_01027	0.11	-1.5
1,113,689	+		CCNA_01027	0.11	+1.1
1,113,701	+		CCNA_01027	0.14	-1.2
1,113,701	+		CCNA_01027	0.14	+1.6
1,113,701	+				-0.2
1,113,701	+		CCNA_01027	0.14	+0.1
1,113,701	+		CCNA_01027	0.14	+0.5
1,113,701	+		CCNA_01027	0.14	+0.8
1,113,711	+		CCNA_01027	0.17	+0.1
1,113,720	-		CCNA_01027	0.20	+0.3