Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00762

Experiment: PYE 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00760 and CCNA_00761 are separated by 144 nucleotidesCCNA_00761 and CCNA_00762 overlap by 4 nucleotidesCCNA_00762 and CCNA_00763 are separated by 4 nucleotidesCCNA_00763 and CCNA_00764 overlap by 1 nucleotides CCNA_00760: CCNA_00760 - two component sensor histidine kinase, at 818,810 to 820,510 _00760 CCNA_00761: CCNA_00761 - hypothetical protein, at 820,655 to 820,864 _00761 CCNA_00762: CCNA_00762 - hypothetical protein, at 820,861 to 821,205 _00762 CCNA_00763: CCNA_00763 - electron transfer flavoprotein alpha subunit, at 821,210 to 822,151 _00763 CCNA_00764: CCNA_00764 - electron transfer flavoprotein beta subunit, at 822,151 to 822,897 _00764 Position (kb) 820 821 822Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 819.868 kb on - strand, within CCNA_00760at 819.877 kb on + strand, within CCNA_00760at 819.877 kb on + strand, within CCNA_00760at 819.877 kb on + strand, within CCNA_00760at 819.924 kb on + strand, within CCNA_00760at 819.930 kb on + strand, within CCNA_00760at 819.930 kb on + strand, within CCNA_00760at 819.946 kb on + strand, within CCNA_00760at 819.954 kb on + strand, within CCNA_00760at 819.954 kb on - strand, within CCNA_00760at 819.967 kb on - strand, within CCNA_00760at 819.982 kb on - strand, within CCNA_00760at 819.982 kb on - strand, within CCNA_00760at 819.982 kb on - strand, within CCNA_00760at 819.982 kb on - strand, within CCNA_00760at 819.984 kb on + strand, within CCNA_00760at 819.992 kb on - strand, within CCNA_00760at 819.992 kb on - strand, within CCNA_00760at 820.009 kb on - strand, within CCNA_00760at 820.027 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.127 kb on - strand, within CCNA_00760at 820.127 kb on - strand, within CCNA_00760at 820.127 kb on - strand, within CCNA_00760at 820.127 kb on - strand, within CCNA_00760at 820.127 kb on - strand, within CCNA_00760at 820.153 kb on + strand, within CCNA_00760at 820.192 kb on + strand, within CCNA_00760at 820.200 kb on - strand, within CCNA_00760at 820.200 kb on - strand, within CCNA_00760at 820.250 kb on - strand, within CCNA_00760at 820.252 kb on + strand, within CCNA_00760at 820.267 kb on + strand, within CCNA_00760at 820.333 kb on - strand, within CCNA_00760at 820.349 kb on + strandat 820.349 kb on + strandat 820.349 kb on + strandat 820.357 kb on - strandat 820.362 kb on + strandat 820.362 kb on + strandat 820.370 kb on - strandat 820.370 kb on - strandat 820.370 kb on - strandat 820.370 kb on - strandat 820.370 kb on - strandat 820.370 kb on - strandat 820.393 kb on + strandat 820.398 kb on + strandat 820.398 kb on + strandat 820.398 kb on + strandat 820.406 kb on - strandat 820.446 kb on - strandat 820.446 kb on - strandat 820.446 kb on - strandat 820.478 kb on + strandat 820.534 kb on + strandat 820.547 kb on + strandat 820.555 kb on - strandat 820.555 kb on - strandat 820.594 kb on - strandat 820.610 kb on + strandat 820.633 kb on - strandat 820.647 kb on + strandat 820.647 kb on + strandat 820.649 kb on - strandat 820.655 kb on - strandat 820.655 kb on - strandat 820.670 kb on - strandat 820.951 kb on - strand, within CCNA_00762at 820.992 kb on + strand, within CCNA_00762at 821.000 kb on - strand, within CCNA_00762at 821.000 kb on - strand, within CCNA_00762at 821.000 kb on - strand, within CCNA_00762at 821.075 kb on + strand, within CCNA_00762at 821.080 kb on + strand, within CCNA_00762at 821.080 kb on + strandat 821.088 kb on - strand, within CCNA_00762at 821.088 kb on - strand, within CCNA_00762at 821.088 kb on - strand, within CCNA_00762at 821.088 kb on - strand, within CCNA_00762at 821.111 kb on + strand, within CCNA_00762at 821.123 kb on + strand, within CCNA_00762at 821.131 kb on - strand, within CCNA_00762at 821.138 kb on + strand, within CCNA_00762at 821.181 kb on - strandat 821.192 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days
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819,868 - CCNA_00760 0.62 +0.3
819,877 + CCNA_00760 0.63 +1.0
819,877 + CCNA_00760 0.63 -0.7
819,877 + CCNA_00760 0.63 -2.2
819,924 + CCNA_00760 0.65 -0.5
819,930 + CCNA_00760 0.66 +0.0
819,930 + CCNA_00760 0.66 -1.0
819,946 + CCNA_00760 0.67 -1.8
819,954 + CCNA_00760 0.67 -1.2
819,954 - CCNA_00760 0.67 +3.6
819,967 - CCNA_00760 0.68 +0.3
819,982 - CCNA_00760 0.69 +1.4
819,982 - CCNA_00760 0.69 +2.3
819,982 - CCNA_00760 0.69 -2.0
819,982 - CCNA_00760 0.69 -0.1
819,984 + CCNA_00760 0.69 -1.2
819,992 - CCNA_00760 0.69 +1.1
819,992 - CCNA_00760 0.69 -1.0
820,009 - CCNA_00760 0.70 +1.2
820,027 + CCNA_00760 0.72 -2.5
820,119 + CCNA_00760 0.77 -0.6
820,119 + CCNA_00760 0.77 -2.1
820,119 + CCNA_00760 0.77 -1.9
820,119 + CCNA_00760 0.77 -2.1
820,119 + CCNA_00760 0.77 -2.5
820,119 + CCNA_00760 0.77 -0.4
820,119 + CCNA_00760 0.77 +2.6
820,119 + CCNA_00760 0.77 -0.7
820,127 - CCNA_00760 0.77 -1.1
820,127 - CCNA_00760 0.77 -0.2
820,127 - CCNA_00760 0.77 +1.0
820,127 - CCNA_00760 0.77 -1.8
820,127 - CCNA_00760 0.77 +1.2
820,153 + CCNA_00760 0.79 +0.4
820,192 + CCNA_00760 0.81 +0.4
820,200 - CCNA_00760 0.82 -0.0
820,200 - CCNA_00760 0.82 -3.3
820,250 - CCNA_00760 0.85 -0.2
820,252 + CCNA_00760 0.85 -0.8
820,267 + CCNA_00760 0.86 +1.9
820,333 - CCNA_00760 0.90 +0.7
820,349 + -1.7
820,349 + -0.3
820,349 + +0.8
820,357 - +1.9
820,362 + -1.8
820,362 + -0.6
820,370 - -2.4
820,370 - -1.8
820,370 - +0.9
820,370 - +1.6
820,370 - +0.6
820,370 - -0.8
820,393 + +1.9
820,398 + -1.5
820,398 + +4.0
820,398 + -2.3
820,406 - +0.8
820,446 - +0.2
820,446 - +0.2
820,446 - +0.7
820,478 + -2.4
820,534 + -0.8
820,547 + -2.1
820,555 - +2.1
820,555 - +1.1
820,594 - -0.9
820,610 + -0.6
820,633 - -0.3
820,647 + -0.2
820,647 + -0.7
820,649 - -0.8
820,655 - -1.7
820,655 - -2.5
820,670 - +1.2
820,951 - CCNA_00762 0.26 +2.6
820,992 + CCNA_00762 0.38 +2.0
821,000 - CCNA_00762 0.40 +0.3
821,000 - CCNA_00762 0.40 +1.4
821,000 - CCNA_00762 0.40 +0.7
821,075 + CCNA_00762 0.62 +0.0
821,080 + CCNA_00762 0.63 +4.1
821,080 + -0.6
821,088 - CCNA_00762 0.66 -0.2
821,088 - CCNA_00762 0.66 +2.2
821,088 - CCNA_00762 0.66 +0.1
821,088 - CCNA_00762 0.66 +1.5
821,111 + CCNA_00762 0.72 -1.8
821,123 + CCNA_00762 0.76 +1.6
821,131 - CCNA_00762 0.78 -0.4
821,138 + CCNA_00762 0.80 -2.3
821,181 - +2.3
821,192 + -2.3

Or see this region's nucleotide sequence