Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00672

Experiment: PYE 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00670 and CCNA_00671 are separated by 9 nucleotidesCCNA_00671 and CCNA_00672 are separated by 133 nucleotidesCCNA_00672 and CCNA_00673 are separated by 87 nucleotides CCNA_00670: CCNA_00670 - ABC-type polysaccharide/polyol phosphate transport system, ATPase component, at 728,203 to 728,955 _00670 CCNA_00671: CCNA_00671 - ABC-type polysaccharide/polyol phosphate export system, permease component, at 728,965 to 729,756 _00671 CCNA_00672: CCNA_00672 - hypothetical protein, at 729,890 to 730,693 _00672 CCNA_00673: CCNA_00673 - AraC-family transcriptional regulator, at 730,781 to 731,788 _00673 Position (kb) 729 730 731Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 728.936 kb on + strandat 728.960 kb on + strandat 728.968 kb on - strandat 729.782 kb on + strandat 729.782 kb on + strandat 729.782 kb on + strandat 729.799 kb on + strandat 729.807 kb on - strandat 729.817 kb on - strandat 729.837 kb on - strandat 729.837 kb on - strandat 729.850 kb on + strandat 729.855 kb on + strandat 729.922 kb on + strandat 729.926 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.933 kb on + strandat 729.935 kb on - strandat 729.941 kb on - strandat 729.963 kb on - strandat 729.981 kb on + strand, within CCNA_00672at 729.981 kb on + strand, within CCNA_00672at 729.981 kb on + strand, within CCNA_00672at 729.989 kb on - strand, within CCNA_00672at 730.001 kb on - strand, within CCNA_00672at 730.001 kb on - strand, within CCNA_00672at 730.008 kb on + strand, within CCNA_00672at 730.016 kb on - strand, within CCNA_00672at 730.019 kb on - strand, within CCNA_00672at 730.053 kb on - strand, within CCNA_00672at 730.063 kb on + strand, within CCNA_00672at 730.063 kb on + strand, within CCNA_00672at 730.066 kb on - strand, within CCNA_00672at 730.085 kb on - strand, within CCNA_00672at 730.085 kb on - strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.184 kb on + strand, within CCNA_00672at 730.192 kb on + strand, within CCNA_00672at 730.192 kb on - strand, within CCNA_00672at 730.227 kb on + strand, within CCNA_00672at 730.227 kb on + strand, within CCNA_00672at 730.252 kb on - strand, within CCNA_00672at 730.262 kb on + strand, within CCNA_00672at 730.272 kb on + strand, within CCNA_00672at 730.285 kb on - strand, within CCNA_00672at 730.393 kb on - strand, within CCNA_00672at 730.395 kb on + strand, within CCNA_00672at 730.427 kb on + strand, within CCNA_00672at 730.442 kb on - strand, within CCNA_00672at 730.481 kb on + strand, within CCNA_00672at 730.482 kb on + strand, within CCNA_00672at 730.498 kb on + strand, within CCNA_00672at 730.505 kb on + strand, within CCNA_00672at 730.523 kb on - strand, within CCNA_00672at 730.532 kb on - strand, within CCNA_00672at 730.551 kb on + strand, within CCNA_00672at 730.556 kb on + strand, within CCNA_00672at 730.556 kb on + strand, within CCNA_00672at 730.556 kb on + strand, within CCNA_00672at 730.559 kb on - strand, within CCNA_00672at 730.564 kb on - strand, within CCNA_00672at 730.584 kb on - strand, within CCNA_00672at 730.599 kb on + strandat 730.613 kb on - strandat 730.652 kb on + strandat 730.660 kb on - strandat 730.666 kb on - strandat 730.743 kb on - strandat 730.763 kb on + strandat 730.765 kb on + strandat 730.786 kb on - strandat 730.787 kb on + strandat 730.788 kb on - strandat 730.835 kb on + strandat 730.843 kb on - strandat 730.843 kb on - strandat 730.872 kb on + strandat 730.873 kb on + strandat 730.902 kb on + strand, within CCNA_00673at 730.929 kb on + strand, within CCNA_00673at 730.937 kb on - strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.961 kb on - strand, within CCNA_00673at 731.007 kb on + strand, within CCNA_00673at 731.025 kb on - strand, within CCNA_00673at 731.067 kb on + strand, within CCNA_00673at 731.081 kb on - strand, within CCNA_00673at 731.116 kb on + strand, within CCNA_00673at 731.124 kb on - strand, within CCNA_00673at 731.188 kb on + strand, within CCNA_00673at 731.188 kb on + strand, within CCNA_00673at 731.196 kb on - strand, within CCNA_00673at 731.196 kb on - strand, within CCNA_00673at 731.197 kb on - strand, within CCNA_00673at 731.207 kb on - strand, within CCNA_00673at 731.207 kb on - strand, within CCNA_00673at 731.209 kb on + strand, within CCNA_00673at 731.219 kb on + strand, within CCNA_00673at 731.233 kb on + strand, within CCNA_00673at 731.279 kb on - strand, within CCNA_00673at 731.315 kb on + strand, within CCNA_00673at 731.347 kb on - strand, within CCNA_00673at 731.347 kb on - strand, within CCNA_00673at 731.349 kb on + strand, within CCNA_00673at 731.367 kb on - strand, within CCNA_00673at 731.424 kb on - strand, within CCNA_00673at 731.482 kb on - strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.561 kb on + strand, within CCNA_00673at 731.577 kb on + strand, within CCNA_00673at 731.585 kb on - strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.616 kb on - strand, within CCNA_00673at 731.617 kb on - strand, within CCNA_00673at 731.622 kb on + strand, within CCNA_00673at 731.627 kb on + strand, within CCNA_00673at 731.627 kb on + strand, within CCNA_00673at 731.654 kb on + strand, within CCNA_00673at 731.662 kb on - strand, within CCNA_00673

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days
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728,936 + +1.6
728,960 + -1.0
728,968 - +0.9
729,782 + -2.1
729,782 + -0.4
729,782 + +1.6
729,799 + -0.4
729,807 - -4.2
729,817 - -2.5
729,837 - +1.6
729,837 - +2.8
729,850 + +1.6
729,855 + -0.5
729,922 + -0.8
729,926 + -1.5
729,927 + -1.2
729,927 + -2.5
729,927 + -0.2
729,933 + -0.9
729,935 - +0.3
729,941 - -0.2
729,963 - +2.6
729,981 + CCNA_00672 0.11 -1.8
729,981 + CCNA_00672 0.11 -1.2
729,981 + CCNA_00672 0.11 -1.0
729,989 - CCNA_00672 0.12 -0.5
730,001 - CCNA_00672 0.14 -0.6
730,001 - CCNA_00672 0.14 -0.5
730,008 + CCNA_00672 0.15 -0.7
730,016 - CCNA_00672 0.16 -2.4
730,019 - CCNA_00672 0.16 +0.6
730,053 - CCNA_00672 0.20 -1.2
730,063 + CCNA_00672 0.22 -1.1
730,063 + CCNA_00672 0.22 -1.5
730,066 - CCNA_00672 0.22 -0.2
730,085 - CCNA_00672 0.24 -1.3
730,085 - CCNA_00672 0.24 -0.8
730,104 + CCNA_00672 0.27 -2.1
730,104 + CCNA_00672 0.27 -0.2
730,104 + CCNA_00672 0.27 -0.2
730,104 + CCNA_00672 0.27 +1.5
730,104 + CCNA_00672 0.27 -0.5
730,104 + CCNA_00672 0.27 +1.6
730,104 + CCNA_00672 0.27 -1.2
730,104 + CCNA_00672 0.27 -3.0
730,112 - CCNA_00672 0.28 +0.5
730,112 - CCNA_00672 0.28 +2.0
730,184 + CCNA_00672 0.37 -1.8
730,192 + CCNA_00672 0.38 -2.5
730,192 - CCNA_00672 0.38 -1.3
730,227 + CCNA_00672 0.42 -1.0
730,227 + CCNA_00672 0.42 -1.4
730,252 - CCNA_00672 0.45 -0.2
730,262 + CCNA_00672 0.46 -1.5
730,272 + CCNA_00672 0.48 -0.1
730,285 - CCNA_00672 0.49 -1.2
730,393 - CCNA_00672 0.63 -0.3
730,395 + CCNA_00672 0.63 -1.0
730,427 + CCNA_00672 0.67 -0.8
730,442 - CCNA_00672 0.69 -0.9
730,481 + CCNA_00672 0.74 -1.0
730,482 + CCNA_00672 0.74 -2.7
730,498 + CCNA_00672 0.76 -1.8
730,505 + CCNA_00672 0.76 -0.5
730,523 - CCNA_00672 0.79 -2.0
730,532 - CCNA_00672 0.80 -1.8
730,551 + CCNA_00672 0.82 +0.0
730,556 + CCNA_00672 0.83 -2.3
730,556 + CCNA_00672 0.83 -2.7
730,556 + CCNA_00672 0.83 -0.7
730,559 - CCNA_00672 0.83 -1.2
730,564 - CCNA_00672 0.84 -1.4
730,584 - CCNA_00672 0.86 -0.0
730,599 + -1.4
730,613 - -0.6
730,652 + -2.6
730,660 - -1.1
730,666 - +2.0
730,743 - -0.8
730,763 + -1.1
730,765 + +1.6
730,786 - +1.8
730,787 + +0.4
730,788 - -0.8
730,835 + +1.6
730,843 - -0.2
730,843 - +0.0
730,872 + -1.3
730,873 + -1.8
730,902 + CCNA_00673 0.12 -1.1
730,929 + CCNA_00673 0.15 +0.5
730,937 - CCNA_00673 0.15 +1.0
730,952 + CCNA_00673 0.17 +0.6
730,952 + CCNA_00673 0.17 +0.6
730,952 + CCNA_00673 0.17 -0.4
730,952 + CCNA_00673 0.17 -1.5
730,952 + CCNA_00673 0.17 -0.7
730,960 - CCNA_00673 0.18 -0.8
730,960 - CCNA_00673 0.18 -0.4
730,960 - CCNA_00673 0.18 +2.6
730,960 - CCNA_00673 0.18 -0.0
730,960 - CCNA_00673 0.18 -1.7
730,960 - CCNA_00673 0.18 +4.6
730,960 - CCNA_00673 0.18 -1.0
730,960 - CCNA_00673 0.18 -1.0
730,961 - CCNA_00673 0.18 -0.2
731,007 + CCNA_00673 0.22 +1.2
731,025 - CCNA_00673 0.24 +0.8
731,067 + CCNA_00673 0.28 +0.5
731,081 - CCNA_00673 0.30 +0.4
731,116 + CCNA_00673 0.33 -1.1
731,124 - CCNA_00673 0.34 +1.6
731,188 + CCNA_00673 0.40 +0.5
731,188 + CCNA_00673 0.40 -0.2
731,196 - CCNA_00673 0.41 -1.5
731,196 - CCNA_00673 0.41 -3.0
731,197 - CCNA_00673 0.41 -1.6
731,207 - CCNA_00673 0.42 -0.4
731,207 - CCNA_00673 0.42 -0.8
731,209 + CCNA_00673 0.42 -1.2
731,219 + CCNA_00673 0.43 +1.2
731,233 + CCNA_00673 0.45 +1.5
731,279 - CCNA_00673 0.49 -2.3
731,315 + CCNA_00673 0.53 -1.7
731,347 - CCNA_00673 0.56 +1.4
731,347 - CCNA_00673 0.56 -2.4
731,349 + CCNA_00673 0.56 +1.0
731,367 - CCNA_00673 0.58 -2.1
731,424 - CCNA_00673 0.64 -2.0
731,482 - CCNA_00673 0.70 +2.6
731,497 + CCNA_00673 0.71 +2.6
731,497 + CCNA_00673 0.71 +2.6
731,497 + CCNA_00673 0.71 +2.3
731,497 + CCNA_00673 0.71 +0.2
731,561 + CCNA_00673 0.77 +0.8
731,577 + CCNA_00673 0.79 +1.9
731,585 - CCNA_00673 0.80 +1.0
731,596 + CCNA_00673 0.81 -0.9
731,596 + CCNA_00673 0.81 +1.0
731,596 + CCNA_00673 0.81 +1.5
731,596 + CCNA_00673 0.81 -0.7
731,596 + CCNA_00673 0.81 +2.8
731,604 - CCNA_00673 0.82 -1.0
731,604 - CCNA_00673 0.82 +0.4
731,604 - CCNA_00673 0.82 +0.6
731,604 - CCNA_00673 0.82 +0.2
731,604 - CCNA_00673 0.82 -1.7
731,604 - CCNA_00673 0.82 -2.7
731,604 - CCNA_00673 0.82 -2.2
731,616 - CCNA_00673 0.83 +0.3
731,617 - CCNA_00673 0.83 +0.1
731,622 + CCNA_00673 0.83 +1.4
731,627 + CCNA_00673 0.84 -0.3
731,627 + CCNA_00673 0.84 -3.2
731,654 + CCNA_00673 0.87 +0.7
731,662 - CCNA_00673 0.87 +0.0

Or see this region's nucleotide sequence