Experiment: PYE 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00620 and CCNA_00621 are separated by 402 nucleotides CCNA_00621 and CCNA_00622 are separated by 19 nucleotides CCNA_00622 and CCNA_00623 are separated by 137 nucleotides
CCNA_00620: CCNA_00620 - acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase, at 664,466 to 665,644
_00620
CCNA_00621: CCNA_00621 - conserved domain hypothetical protein, at 666,047 to 666,601
_00621
CCNA_00622: CCNA_00622 - hypothetical protein, at 666,621 to 666,806
_00622
CCNA_00623: CCNA_00623 - PAS-family sensor histidine kinase, at 666,944 to 669,151
_00623
Position (kb) 666
667 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 665.637 kb on - strand at 665.657 kb on + strand at 665.657 kb on + strand at 665.665 kb on - strand at 665.665 kb on - strand at 665.665 kb on - strand at 665.665 kb on - strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.749 kb on - strand at 665.814 kb on - strand at 665.820 kb on + strand at 665.863 kb on + strand at 665.863 kb on + strand at 665.863 kb on + strand at 665.863 kb on + strand at 665.863 kb on + strand at 665.863 kb on + strand at 665.870 kb on - strand at 665.871 kb on - strand at 665.871 kb on - strand at 665.871 kb on - strand at 665.871 kb on - strand at 665.880 kb on - strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.886 kb on + strand at 665.888 kb on + strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.894 kb on - strand at 665.900 kb on + strand at 665.900 kb on + strand at 665.900 kb on + strand at 665.908 kb on - strand at 665.908 kb on - strand at 665.908 kb on - strand at 665.909 kb on + strand at 665.912 kb on + strand at 665.921 kb on + strand at 665.921 kb on + strand at 665.921 kb on + strand at 665.921 kb on + strand at 665.921 kb on + strand at 665.929 kb on - strand at 665.929 kb on - strand at 665.929 kb on - strand at 665.929 kb on - strand at 665.935 kb on + strand at 665.969 kb on - strand at 665.988 kb on + strand at 665.988 kb on + strand at 665.988 kb on + strand at 665.988 kb on + strand at 665.988 kb on + strand at 665.988 kb on + strand at 665.996 kb on - strand at 665.996 kb on - strand at 665.996 kb on - strand at 665.996 kb on - strand at 666.007 kb on - strand at 666.015 kb on - strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.020 kb on + strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.028 kb on - strand at 666.030 kb on + strand at 666.030 kb on + strand at 666.030 kb on + strand at 666.030 kb on + strand at 666.030 kb on + strand at 666.030 kb on + strand at 666.033 kb on - strand at 666.038 kb on - strand at 666.038 kb on - strand at 666.038 kb on - strand at 666.038 kb on - strand at 666.038 kb on - strand at 666.038 kb on - strand at 666.038 kb on - strand at 666.038 kb on - strand at 666.038 kb on - strand at 666.045 kb on + strand at 666.045 kb on + strand at 666.053 kb on - strand at 666.057 kb on + strand at 666.063 kb on + strand at 666.065 kb on - strand at 666.065 kb on - strand at 666.066 kb on - strand at 666.068 kb on + strand at 666.106 kb on + strand, within CCNA_00621 at 666.107 kb on - strand, within CCNA_00621 at 666.121 kb on + strand, within CCNA_00621 at 666.121 kb on - strand, within CCNA_00621 at 666.129 kb on - strand, within CCNA_00621 at 666.131 kb on - strand, within CCNA_00621 at 666.176 kb on - strand, within CCNA_00621 at 666.280 kb on + strand, within CCNA_00621 at 666.288 kb on - strand, within CCNA_00621 at 666.288 kb on - strand, within CCNA_00621 at 666.288 kb on - strand, within CCNA_00621 at 666.299 kb on - strand, within CCNA_00621 at 666.299 kb on - strand, within CCNA_00621 at 666.299 kb on - strand, within CCNA_00621 at 666.453 kb on + strand, within CCNA_00621 at 666.463 kb on + strand, within CCNA_00621 at 666.463 kb on + strand, within CCNA_00621 at 666.492 kb on - strand, within CCNA_00621 at 666.494 kb on + strand, within CCNA_00621 at 666.519 kb on - strand, within CCNA_00621 at 666.546 kb on - strand at 666.561 kb on + strand at 666.561 kb on + strand at 666.561 kb on + strand at 666.561 kb on + strand at 666.571 kb on + strand at 666.572 kb on - strand at 666.574 kb on - strand at 666.585 kb on + strand at 666.585 kb on + strand at 666.585 kb on + strand at 666.621 kb on - strand at 666.632 kb on + strand at 666.640 kb on - strand, within CCNA_00622 at 666.640 kb on - strand, within CCNA_00622 at 666.640 kb on - strand, within CCNA_00622 at 666.653 kb on - strand, within CCNA_00622 at 666.661 kb on - strand, within CCNA_00622 at 666.666 kb on + strand, within CCNA_00622 at 666.674 kb on - strand, within CCNA_00622 at 666.674 kb on - strand, within CCNA_00622 at 666.674 kb on - strand, within CCNA_00622 at 666.674 kb on - strand, within CCNA_00622 at 666.674 kb on - strand, within CCNA_00622 at 666.674 kb on - strand, within CCNA_00622 at 666.674 kb on - strand, within CCNA_00622 at 666.690 kb on + strand, within CCNA_00622 at 666.699 kb on + strand, within CCNA_00622 at 666.701 kb on + strand, within CCNA_00622 at 666.741 kb on + strand, within CCNA_00622 at 666.749 kb on + strand, within CCNA_00622 at 666.799 kb on + strand at 666.800 kb on + strand at 666.800 kb on + strand at 666.800 kb on + strand at 666.808 kb on - strand at 666.808 kb on - strand at 666.840 kb on + strand at 666.843 kb on - strand at 666.848 kb on - strand at 666.848 kb on - strand at 666.906 kb on + strand at 666.906 kb on + strand at 666.906 kb on + strand at 666.906 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.916 kb on + strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.924 kb on - strand at 666.940 kb on + strand at 666.940 kb on + strand at 666.940 kb on + strand at 666.948 kb on + strand at 666.948 kb on + strand at 666.948 kb on + strand at 666.948 kb on - strand at 666.948 kb on - strand at 666.948 kb on - strand at 666.948 kb on - strand at 666.948 kb on - strand at 666.956 kb on - strand at 666.956 kb on - strand at 666.956 kb on - strand at 666.956 kb on - strand at 666.956 kb on - strand at 666.965 kb on + strand at 667.026 kb on + strand at 667.029 kb on - strand at 667.035 kb on + strand at 667.045 kb on + strand at 667.045 kb on + strand at 667.048 kb on - strand at 667.053 kb on - strand at 667.081 kb on - strand at 667.094 kb on + strand at 667.107 kb on + strand at 667.113 kb on + strand at 667.121 kb on - strand at 667.121 kb on - strand at 667.126 kb on - strand at 667.207 kb on - strand, within CCNA_00623 at 667.260 kb on + strand, within CCNA_00623 at 667.265 kb on - strand, within CCNA_00623 at 667.268 kb on - strand, within CCNA_00623 at 667.268 kb on - strand, within CCNA_00623 at 667.268 kb on - strand, within CCNA_00623 at 667.270 kb on + strand, within CCNA_00623 at 667.282 kb on + strand, within CCNA_00623 at 667.342 kb on - strand, within CCNA_00623 at 667.395 kb on + strand, within CCNA_00623 at 667.403 kb on + strand, within CCNA_00623 at 667.419 kb on + strand, within CCNA_00623 at 667.472 kb on + strand, within CCNA_00623 at 667.481 kb on + strand, within CCNA_00623 at 667.481 kb on + strand, within CCNA_00623 at 667.486 kb on + strand, within CCNA_00623 at 667.489 kb on - strand, within CCNA_00623 at 667.494 kb on - strand, within CCNA_00623 at 667.494 kb on - strand, within CCNA_00623 at 667.494 kb on - strand, within CCNA_00623 at 667.549 kb on + strand, within CCNA_00623 at 667.554 kb on + strand, within CCNA_00623 at 667.562 kb on - strand, within CCNA_00623 at 667.562 kb on - strand, within CCNA_00623 at 667.562 kb on - strand, within CCNA_00623 at 667.564 kb on + strand, within CCNA_00623 at 667.564 kb on + strand, within CCNA_00623 at 667.603 kb on + strand, within CCNA_00623 at 667.613 kb on - strand, within CCNA_00623 at 667.628 kb on - strand, within CCNA_00623 at 667.630 kb on + strand, within CCNA_00623 at 667.672 kb on + strand, within CCNA_00623 at 667.690 kb on - strand, within CCNA_00623 at 667.715 kb on + strand, within CCNA_00623 at 667.720 kb on + strand, within CCNA_00623 at 667.720 kb on + strand, within CCNA_00623 at 667.725 kb on + strand, within CCNA_00623 at 667.728 kb on - strand, within CCNA_00623 at 667.728 kb on - strand, within CCNA_00623 at 667.734 kb on + strand, within CCNA_00623 at 667.752 kb on - strand, within CCNA_00623 at 667.762 kb on - strand, within CCNA_00623 at 667.762 kb on - strand, within CCNA_00623 at 667.779 kb on + strand, within CCNA_00623 at 667.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days remove 665,637 - -3.0 665,657 + -0.6 665,657 + +1.2 665,665 - -1.6 665,665 - -2.5 665,665 - +2.6 665,665 - +1.2 665,749 - +2.6 665,749 - +0.3 665,749 - +0.7 665,814 - +1.3 665,820 + +0.6 665,863 + -0.5 665,863 + -0.1 665,863 + +0.6 665,863 + +0.5 665,863 + -0.2 665,863 + +1.2 665,870 - +2.6 665,871 - -1.0 665,871 - -2.0 665,871 - -0.2 665,871 - -3.4 665,880 - -2.8 665,886 + +0.7 665,886 + +1.5 665,886 + -1.1 665,886 + -1.4 665,886 + +0.7 665,886 + -0.7 665,886 + +1.5 665,886 + -2.3 665,886 + +0.3 665,886 + +0.4 665,886 + -0.1 665,886 + +0.7 665,886 + +0.0 665,886 + +0.0 665,886 + +3.7 665,886 + +1.1 665,886 + +0.5 665,886 + -0.3 665,886 + +1.2 665,886 + +1.5 665,886 + +0.8 665,886 + +1.1 665,886 + +0.4 665,886 + +0.2 665,886 + +0.7 665,888 + -1.8 665,894 - -0.2 665,894 - -1.9 665,894 - -2.5 665,894 - -0.7 665,894 - -1.7 665,894 - -1.0 665,894 - -1.2 665,894 - +1.0 665,894 - +0.7 665,894 - -1.4 665,894 - -0.7 665,900 + +0.3 665,900 + -2.1 665,900 + -2.2 665,908 - -2.4 665,908 - +2.6 665,908 - -1.9 665,909 + -0.5 665,912 + +0.0 665,921 + +0.3 665,921 + +2.6 665,921 + +0.9 665,921 + -1.8 665,921 + -0.4 665,929 - +1.0 665,929 - +1.6 665,929 - -1.6 665,929 - -0.8 665,935 + +0.1 665,969 - +0.3 665,988 + -0.2 665,988 + +1.0 665,988 + -0.0 665,988 + -2.4 665,988 + +0.5 665,988 + -1.0 665,996 - -1.7 665,996 - +0.1 665,996 - -0.0 665,996 - -0.2 666,007 - +2.6 666,015 - +0.8 666,020 + +1.9 666,020 + +1.4 666,020 + -2.0 666,020 + -1.8 666,020 + -2.3 666,020 + -1.4 666,020 + -2.2 666,020 + -2.0 666,020 + -1.0 666,020 + -0.2 666,020 + -1.9 666,020 + -1.8 666,020 + -0.8 666,020 + -3.4 666,028 - +0.2 666,028 - +0.1 666,028 - +1.2 666,028 - +0.5 666,028 - +0.2 666,028 - -0.9 666,028 - -0.1 666,028 - +0.4 666,028 - +1.3 666,028 - +0.7 666,028 - +0.7 666,028 - +0.9 666,028 - +0.1 666,028 - +0.3 666,028 - +0.7 666,028 - +0.7 666,028 - +0.6 666,028 - +0.6 666,028 - +1.1 666,028 - -0.0 666,028 - +0.8 666,028 - +0.4 666,028 - +0.7 666,028 - +0.3 666,028 - +0.1 666,030 + -1.5 666,030 + -3.0 666,030 + +0.0 666,030 + -1.7 666,030 + -0.8 666,030 + -1.3 666,033 - -2.7 666,038 - +0.5 666,038 - -0.2 666,038 - -0.2 666,038 - -1.5 666,038 - -3.0 666,038 - -1.8 666,038 - -1.4 666,038 - +2.6 666,038 - -1.1 666,045 + -1.0 666,045 + -0.5 666,053 - +1.8 666,057 + -0.4 666,063 + +1.6 666,065 - -1.3 666,065 - -0.5 666,066 - -2.2 666,068 + +0.0 666,106 + CCNA_00621 0.11 +1.0 666,107 - CCNA_00621 0.11 -1.7 666,121 + CCNA_00621 0.13 -0.5 666,121 - CCNA_00621 0.13 -0.5 666,129 - CCNA_00621 0.15 +0.1 666,131 - CCNA_00621 0.15 +0.7 666,176 - CCNA_00621 0.23 -2.6 666,280 + CCNA_00621 0.42 -1.2 666,288 - CCNA_00621 0.43 +0.6 666,288 - CCNA_00621 0.43 +2.3 666,288 - CCNA_00621 0.43 +0.6 666,299 - CCNA_00621 0.45 -0.9 666,299 - CCNA_00621 0.45 -0.5 666,299 - CCNA_00621 0.45 +2.7 666,453 + CCNA_00621 0.73 -1.6 666,463 + CCNA_00621 0.75 -1.4 666,463 + CCNA_00621 0.75 +1.0 666,492 - CCNA_00621 0.80 +1.8 666,494 + CCNA_00621 0.81 -2.7 666,519 - CCNA_00621 0.85 +1.6 666,546 - +1.9 666,561 + +1.6 666,561 + -3.1 666,561 + -1.5 666,561 + -2.4 666,571 + +0.4 666,572 - -2.1 666,574 - +0.0 666,585 + -2.2 666,585 + +1.0 666,585 + +2.6 666,621 - +0.6 666,632 + +0.6 666,640 - CCNA_00622 0.10 +2.4 666,640 - CCNA_00622 0.10 +1.6 666,640 - CCNA_00622 0.10 -1.9 666,653 - CCNA_00622 0.17 +0.0 666,661 - CCNA_00622 0.22 -0.1 666,666 + CCNA_00622 0.24 +0.8 666,674 - CCNA_00622 0.28 -0.9 666,674 - CCNA_00622 0.28 +1.4 666,674 - CCNA_00622 0.28 -1.8 666,674 - CCNA_00622 0.28 -0.9 666,674 - CCNA_00622 0.28 +0.0 666,674 - CCNA_00622 0.28 -0.5 666,674 - CCNA_00622 0.28 -2.0 666,690 + CCNA_00622 0.37 +0.3 666,699 + CCNA_00622 0.42 -0.8 666,701 + CCNA_00622 0.43 -1.2 666,741 + CCNA_00622 0.65 +0.6 666,749 + CCNA_00622 0.69 +0.2 666,799 + +0.7 666,800 + -0.6 666,800 + -1.8 666,800 + +0.2 666,808 - -2.2 666,808 - -0.7 666,840 + +0.6 666,843 - -2.1 666,848 - -1.4 666,848 - +1.6 666,906 + -0.5 666,906 + +2.1 666,906 + -2.6 666,906 + +0.6 666,916 + -1.6 666,916 + -0.8 666,916 + -1.1 666,916 + -1.5 666,916 + -0.5 666,916 + -0.7 666,916 + +1.6 666,916 + -0.2 666,916 + -0.2 666,916 + -2.5 666,916 + +0.5 666,916 + +0.3 666,916 + -1.1 666,916 + -2.0 666,916 + -1.0 666,924 - +1.6 666,924 - +3.6 666,924 - +1.0 666,924 - +2.9 666,924 - -1.4 666,924 - +1.0 666,924 - -1.7 666,924 - +0.3 666,924 - +2.2 666,924 - +0.3 666,924 - -1.6 666,924 - -0.2 666,924 - +0.2 666,924 - -1.7 666,924 - +0.3 666,924 - +2.3 666,924 - -0.8 666,924 - -2.5 666,924 - -1.8 666,940 + +1.8 666,940 + -0.2 666,940 + +2.6 666,948 + +2.3 666,948 + +0.6 666,948 + -1.8 666,948 - +2.6 666,948 - -1.7 666,948 - -1.8 666,948 - -0.5 666,948 - +0.3 666,956 - +0.6 666,956 - +1.6 666,956 - +3.4 666,956 - +1.0 666,956 - +2.6 666,965 + +1.3 667,026 + -0.4 667,029 - +0.9 667,035 + +0.3 667,045 + -1.3 667,045 + -2.0 667,048 - +0.0 667,053 - +2.6 667,081 - -2.1 667,094 + -2.1 667,107 + -0.4 667,113 + -1.5 667,121 - -0.7 667,121 - -0.3 667,126 - -0.8 667,207 - CCNA_00623 0.12 +2.1 667,260 + CCNA_00623 0.14 -0.5 667,265 - CCNA_00623 0.15 -0.5 667,268 - CCNA_00623 0.15 +2.6 667,268 - CCNA_00623 0.15 -0.2 667,268 - CCNA_00623 0.15 +0.6 667,270 + CCNA_00623 0.15 -0.0 667,282 + CCNA_00623 0.15 +0.3 667,342 - CCNA_00623 0.18 -0.2 667,395 + CCNA_00623 0.20 -0.3 667,403 + CCNA_00623 0.21 -0.1 667,419 + CCNA_00623 0.22 -0.4 667,472 + CCNA_00623 0.24 -4.0 667,481 + CCNA_00623 0.24 +0.6 667,481 + CCNA_00623 0.24 +0.6 667,486 + CCNA_00623 0.25 +1.7 667,489 - CCNA_00623 0.25 -0.8 667,494 - CCNA_00623 0.25 -1.7 667,494 - CCNA_00623 0.25 -0.7 667,494 - CCNA_00623 0.25 -0.7 667,549 + CCNA_00623 0.27 -1.1 667,554 + CCNA_00623 0.28 -1.1 667,562 - CCNA_00623 0.28 +0.0 667,562 - CCNA_00623 0.28 +2.2 667,562 - CCNA_00623 0.28 -1.8 667,564 + CCNA_00623 0.28 -0.7 667,564 + CCNA_00623 0.28 -1.2 667,603 + CCNA_00623 0.30 +2.0 667,613 - CCNA_00623 0.30 +0.3 667,628 - CCNA_00623 0.31 -0.3 667,630 + CCNA_00623 0.31 -1.8 667,672 + CCNA_00623 0.33 +1.1 667,690 - CCNA_00623 0.34 -0.2 667,715 + CCNA_00623 0.35 -2.2 667,720 + CCNA_00623 0.35 +1.8 667,720 + CCNA_00623 0.35 -0.3 667,725 + CCNA_00623 0.35 +0.8 667,728 - CCNA_00623 0.36 +2.2 667,728 - CCNA_00623 0.36 +0.0 667,734 + CCNA_00623 0.36 +1.6 667,752 - CCNA_00623 0.37 +1.6 667,762 - CCNA_00623 0.37 +0.0 667,762 - CCNA_00623 0.37 -1.5 667,779 + CCNA_00623 0.38 +0.9 667,796 - -0.7
Or see this region's nucleotide sequence