Experiment: PYE 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00533 and CCNA_00534 are separated by 126 nucleotides CCNA_00534 and CCNA_00535 are separated by 42 nucleotides CCNA_00535 and CCNA_00536 are separated by 293 nucleotides
CCNA_00533: CCNA_00533 - secreted polysaccharide polymerase hfsI, at 544,865 to 546,187
_00533
CCNA_00534: CCNA_00534 - hypothetical protein, at 546,314 to 547,336
_00534
CCNA_00535: CCNA_00535 - hypothetical protein, at 547,379 to 547,537
_00535
CCNA_00536: CCNA_00536 - DNA-directed RNA polymerase beta chain, at 547,831 to 551,901
_00536
Position (kb) 546
547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 545.337 kb on - strand, within CCNA_00533 at 545.342 kb on - strand, within CCNA_00533 at 545.392 kb on - strand, within CCNA_00533 at 545.392 kb on - strand at 545.404 kb on + strand, within CCNA_00533 at 545.417 kb on - strand, within CCNA_00533 at 545.452 kb on - strand, within CCNA_00533 at 545.483 kb on - strand, within CCNA_00533 at 545.506 kb on + strand, within CCNA_00533 at 545.572 kb on - strand, within CCNA_00533 at 545.572 kb on - strand, within CCNA_00533 at 545.572 kb on - strand, within CCNA_00533 at 545.595 kb on + strand, within CCNA_00533 at 545.603 kb on - strand, within CCNA_00533 at 545.618 kb on + strand, within CCNA_00533 at 545.655 kb on + strand, within CCNA_00533 at 545.664 kb on - strand, within CCNA_00533 at 545.664 kb on - strand, within CCNA_00533 at 545.673 kb on + strand, within CCNA_00533 at 545.673 kb on + strand, within CCNA_00533 at 545.691 kb on - strand, within CCNA_00533 at 545.696 kb on + strand, within CCNA_00533 at 545.704 kb on - strand, within CCNA_00533 at 545.704 kb on - strand, within CCNA_00533 at 545.707 kb on + strand, within CCNA_00533 at 545.713 kb on - strand, within CCNA_00533 at 545.734 kb on + strand, within CCNA_00533 at 545.734 kb on - strand, within CCNA_00533 at 545.742 kb on + strand, within CCNA_00533 at 545.742 kb on + strand, within CCNA_00533 at 545.742 kb on + strand, within CCNA_00533 at 545.743 kb on + strand, within CCNA_00533 at 545.750 kb on - strand, within CCNA_00533 at 545.778 kb on - strand, within CCNA_00533 at 545.780 kb on + strand, within CCNA_00533 at 545.780 kb on + strand, within CCNA_00533 at 545.785 kb on + strand, within CCNA_00533 at 545.788 kb on - strand, within CCNA_00533 at 545.788 kb on - strand, within CCNA_00533 at 545.793 kb on - strand, within CCNA_00533 at 545.797 kb on - strand, within CCNA_00533 at 545.798 kb on - strand, within CCNA_00533 at 545.803 kb on + strand, within CCNA_00533 at 545.816 kb on - strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.845 kb on + strand, within CCNA_00533 at 545.846 kb on - strand, within CCNA_00533 at 545.846 kb on - strand, within CCNA_00533 at 545.846 kb on - strand, within CCNA_00533 at 545.846 kb on - strand, within CCNA_00533 at 545.848 kb on - strand, within CCNA_00533 at 545.848 kb on - strand, within CCNA_00533 at 545.883 kb on + strand, within CCNA_00533 at 545.883 kb on + strand, within CCNA_00533 at 545.883 kb on + strand, within CCNA_00533 at 545.883 kb on + strand, within CCNA_00533 at 545.891 kb on - strand, within CCNA_00533 at 545.894 kb on + strand, within CCNA_00533 at 545.902 kb on - strand, within CCNA_00533 at 545.902 kb on - strand, within CCNA_00533 at 545.912 kb on + strand, within CCNA_00533 at 545.921 kb on - strand, within CCNA_00533 at 545.930 kb on + strand, within CCNA_00533 at 545.975 kb on + strand, within CCNA_00533 at 545.978 kb on - strand, within CCNA_00533 at 545.990 kb on + strand, within CCNA_00533 at 545.996 kb on + strand, within CCNA_00533 at 545.998 kb on - strand, within CCNA_00533 at 546.013 kb on - strand, within CCNA_00533 at 546.013 kb on - strand, within CCNA_00533 at 546.019 kb on + strand, within CCNA_00533 at 546.035 kb on - strand, within CCNA_00533 at 546.036 kb on + strand, within CCNA_00533 at 546.037 kb on - strand, within CCNA_00533 at 546.037 kb on - strand, within CCNA_00533 at 546.037 kb on - strand, within CCNA_00533 at 546.051 kb on + strand, within CCNA_00533 at 546.059 kb on - strand at 546.059 kb on - strand at 546.059 kb on - strand at 546.059 kb on - strand at 546.076 kb on - strand at 546.091 kb on + strand at 546.099 kb on - strand at 546.144 kb on - strand at 546.150 kb on + strand at 546.150 kb on + strand at 546.150 kb on + strand at 546.150 kb on + strand at 546.158 kb on - strand at 546.158 kb on - strand at 546.226 kb on + strand at 546.282 kb on - strand at 546.298 kb on + strand at 546.304 kb on + strand at 546.304 kb on + strand at 546.304 kb on + strand at 546.306 kb on + strand at 546.306 kb on + strand at 546.306 kb on + strand at 546.312 kb on - strand at 546.312 kb on - strand at 546.314 kb on - strand at 546.314 kb on - strand at 546.316 kb on + strand at 546.324 kb on - strand at 546.324 kb on - strand at 546.324 kb on - strand at 546.328 kb on + strand at 546.328 kb on + strand at 546.328 kb on + strand at 546.336 kb on - strand at 546.336 kb on - strand at 546.336 kb on - strand at 546.345 kb on + strand at 546.345 kb on + strand at 546.345 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.398 kb on - strand at 546.403 kb on - strand at 546.433 kb on + strand, within CCNA_00534 at 546.460 kb on + strand, within CCNA_00534 at 546.460 kb on + strand, within CCNA_00534 at 546.470 kb on + strand, within CCNA_00534 at 546.499 kb on + strand, within CCNA_00534 at 546.499 kb on + strand, within CCNA_00534 at 546.545 kb on - strand, within CCNA_00534 at 546.555 kb on + strand, within CCNA_00534 at 546.582 kb on + strand, within CCNA_00534 at 546.625 kb on + strand, within CCNA_00534 at 546.625 kb on + strand, within CCNA_00534 at 546.631 kb on - strand, within CCNA_00534 at 546.633 kb on - strand, within CCNA_00534 at 546.644 kb on - strand, within CCNA_00534 at 546.647 kb on + strand, within CCNA_00534 at 546.655 kb on - strand, within CCNA_00534 at 546.660 kb on - strand, within CCNA_00534 at 546.709 kb on - strand, within CCNA_00534 at 546.735 kb on + strand, within CCNA_00534 at 546.735 kb on - strand, within CCNA_00534 at 546.743 kb on - strand, within CCNA_00534 at 546.744 kb on - strand, within CCNA_00534 at 546.765 kb on + strand, within CCNA_00534 at 546.769 kb on + strand, within CCNA_00534 at 546.769 kb on + strand, within CCNA_00534 at 546.769 kb on + strand, within CCNA_00534 at 546.772 kb on + strand, within CCNA_00534 at 546.777 kb on - strand, within CCNA_00534 at 546.904 kb on + strand, within CCNA_00534 at 546.928 kb on - strand, within CCNA_00534 at 546.931 kb on + strand, within CCNA_00534 at 546.931 kb on + strand, within CCNA_00534 at 546.935 kb on + strand, within CCNA_00534 at 546.939 kb on - strand, within CCNA_00534 at 546.939 kb on - strand, within CCNA_00534 at 546.939 kb on - strand, within CCNA_00534 at 546.950 kb on + strand, within CCNA_00534 at 547.055 kb on + strand, within CCNA_00534 at 547.066 kb on - strand, within CCNA_00534 at 547.082 kb on + strand, within CCNA_00534 at 547.082 kb on + strand, within CCNA_00534 at 547.084 kb on + strand, within CCNA_00534 at 547.090 kb on - strand, within CCNA_00534 at 547.096 kb on - strand, within CCNA_00534 at 547.151 kb on - strand, within CCNA_00534 at 547.181 kb on + strand, within CCNA_00534 at 547.181 kb on + strand, within CCNA_00534 at 547.216 kb on - strand, within CCNA_00534 at 547.240 kb on + strand at 547.240 kb on + strand at 547.240 kb on + strand at 547.261 kb on - strand at 547.261 kb on - strand at 547.263 kb on + strand at 547.263 kb on + strand at 547.263 kb on - strand at 547.268 kb on + strand at 547.268 kb on + strand at 547.276 kb on - strand at 547.283 kb on - strand at 547.289 kb on + strand at 547.302 kb on - strand at 547.322 kb on + strand at 547.330 kb on - strand at 547.330 kb on - strand at 547.332 kb on + strand at 547.339 kb on - strand at 547.340 kb on - strand at 547.344 kb on + strand at 547.387 kb on + strand at 547.388 kb on - strand at 547.419 kb on - strand, within CCNA_00535 at 547.500 kb on + strand, within CCNA_00535 at 547.503 kb on + strand, within CCNA_00535 at 547.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days remove 545,337 - CCNA_00533 0.36 -2.1 545,342 - CCNA_00533 0.36 -2.2 545,392 - CCNA_00533 0.40 -2.8 545,392 - -0.2 545,404 + CCNA_00533 0.41 -1.8 545,417 - CCNA_00533 0.42 -1.3 545,452 - CCNA_00533 0.44 +0.3 545,483 - CCNA_00533 0.47 -1.4 545,506 + CCNA_00533 0.48 -1.6 545,572 - CCNA_00533 0.53 +1.3 545,572 - CCNA_00533 0.53 +0.2 545,572 - CCNA_00533 0.53 +1.0 545,595 + CCNA_00533 0.55 -1.8 545,603 - CCNA_00533 0.56 +1.6 545,618 + CCNA_00533 0.57 -0.6 545,655 + CCNA_00533 0.60 -2.1 545,664 - CCNA_00533 0.60 -0.3 545,664 - CCNA_00533 0.60 +3.6 545,673 + CCNA_00533 0.61 -1.1 545,673 + CCNA_00533 0.61 -0.0 545,691 - CCNA_00533 0.62 +0.1 545,696 + CCNA_00533 0.63 -0.6 545,704 - CCNA_00533 0.63 -2.1 545,704 - CCNA_00533 0.63 -0.8 545,707 + CCNA_00533 0.64 -1.0 545,713 - CCNA_00533 0.64 -1.5 545,734 + CCNA_00533 0.66 +0.7 545,734 - CCNA_00533 0.66 +0.0 545,742 + CCNA_00533 0.66 -2.2 545,742 + CCNA_00533 0.66 -0.0 545,742 + CCNA_00533 0.66 -1.0 545,743 + CCNA_00533 0.66 -0.1 545,750 - CCNA_00533 0.67 -1.0 545,778 - CCNA_00533 0.69 -2.3 545,780 + CCNA_00533 0.69 -0.2 545,780 + CCNA_00533 0.69 +0.1 545,785 + CCNA_00533 0.70 -0.0 545,788 - CCNA_00533 0.70 -1.0 545,788 - CCNA_00533 0.70 +0.8 545,793 - CCNA_00533 0.70 +1.2 545,797 - CCNA_00533 0.70 +1.0 545,798 - CCNA_00533 0.71 -0.4 545,803 + CCNA_00533 0.71 -0.4 545,816 - CCNA_00533 0.72 -1.9 545,838 + CCNA_00533 0.74 -0.2 545,838 + CCNA_00533 0.74 +0.4 545,838 + CCNA_00533 0.74 -0.8 545,838 + CCNA_00533 0.74 -1.2 545,838 + CCNA_00533 0.74 +2.2 545,845 + CCNA_00533 0.74 -1.5 545,846 - CCNA_00533 0.74 -0.1 545,846 - CCNA_00533 0.74 -1.8 545,846 - CCNA_00533 0.74 -0.8 545,846 - CCNA_00533 0.74 -0.1 545,848 - CCNA_00533 0.74 +2.5 545,848 - CCNA_00533 0.74 +1.8 545,883 + CCNA_00533 0.77 -0.3 545,883 + CCNA_00533 0.77 -1.4 545,883 + CCNA_00533 0.77 -0.6 545,883 + CCNA_00533 0.77 -0.2 545,891 - CCNA_00533 0.78 -0.8 545,894 + CCNA_00533 0.78 -2.0 545,902 - CCNA_00533 0.78 +0.4 545,902 - CCNA_00533 0.78 -2.7 545,912 + CCNA_00533 0.79 -0.7 545,921 - CCNA_00533 0.80 +0.2 545,930 + CCNA_00533 0.80 -1.1 545,975 + CCNA_00533 0.84 +2.1 545,978 - CCNA_00533 0.84 -0.8 545,990 + CCNA_00533 0.85 -2.3 545,996 + CCNA_00533 0.85 -0.2 545,998 - CCNA_00533 0.86 -3.2 546,013 - CCNA_00533 0.87 +0.4 546,013 - CCNA_00533 0.87 -2.1 546,019 + CCNA_00533 0.87 +1.0 546,035 - CCNA_00533 0.88 +0.2 546,036 + CCNA_00533 0.89 -0.9 546,037 - CCNA_00533 0.89 -0.7 546,037 - CCNA_00533 0.89 +2.4 546,037 - CCNA_00533 0.89 +0.6 546,051 + CCNA_00533 0.90 +2.3 546,059 - -0.3 546,059 - -0.8 546,059 - -1.0 546,059 - +2.6 546,076 - +2.5 546,091 + -0.1 546,099 - -2.2 546,144 - -2.1 546,150 + -1.4 546,150 + -0.3 546,150 + -0.0 546,150 + -1.7 546,158 - -0.2 546,158 - -1.8 546,226 + -0.4 546,282 - -0.9 546,298 + -0.1 546,304 + -0.0 546,304 + -2.7 546,304 + +1.0 546,306 + +1.0 546,306 + +0.1 546,306 + -2.0 546,312 - -1.5 546,312 - +0.9 546,314 - -0.2 546,314 - -0.5 546,316 + -0.1 546,324 - -0.4 546,324 - -1.2 546,324 - +0.9 546,328 + -0.7 546,328 + +0.2 546,328 + -0.4 546,336 - -0.0 546,336 - +0.6 546,336 - -0.6 546,345 + -0.9 546,345 + +1.1 546,345 + +1.4 546,350 + +1.8 546,350 + -1.1 546,350 + -3.0 546,350 + +0.1 546,350 + -1.3 546,350 + +2.3 546,350 + -0.3 546,350 + +1.9 546,350 + -0.7 546,358 - -2.6 546,358 - -1.0 546,358 - -1.0 546,358 - -1.1 546,358 - -1.0 546,358 - -0.8 546,398 - -0.1 546,403 - -2.2 546,433 + CCNA_00534 0.12 -0.4 546,460 + CCNA_00534 0.14 -1.0 546,460 + CCNA_00534 0.14 +1.8 546,470 + CCNA_00534 0.15 -1.1 546,499 + CCNA_00534 0.18 +0.8 546,499 + CCNA_00534 0.18 +1.6 546,545 - CCNA_00534 0.23 -2.5 546,555 + CCNA_00534 0.24 +0.3 546,582 + CCNA_00534 0.26 -2.3 546,625 + CCNA_00534 0.30 +2.2 546,625 + CCNA_00534 0.30 +0.1 546,631 - CCNA_00534 0.31 -0.9 546,633 - CCNA_00534 0.31 +0.2 546,644 - CCNA_00534 0.32 -1.1 546,647 + CCNA_00534 0.33 +0.4 546,655 - CCNA_00534 0.33 +0.7 546,660 - CCNA_00534 0.34 -0.7 546,709 - CCNA_00534 0.39 -1.2 546,735 + CCNA_00534 0.41 -0.7 546,735 - CCNA_00534 0.41 -0.9 546,743 - CCNA_00534 0.42 -0.6 546,744 - CCNA_00534 0.42 +0.6 546,765 + CCNA_00534 0.44 -1.0 546,769 + CCNA_00534 0.44 -1.2 546,769 + CCNA_00534 0.44 +1.9 546,769 + CCNA_00534 0.44 -0.2 546,772 + CCNA_00534 0.45 -0.1 546,777 - CCNA_00534 0.45 +0.6 546,904 + CCNA_00534 0.58 +2.1 546,928 - CCNA_00534 0.60 +2.0 546,931 + CCNA_00534 0.60 -0.2 546,931 + CCNA_00534 0.60 +1.4 546,935 + CCNA_00534 0.61 +1.4 546,939 - CCNA_00534 0.61 -1.5 546,939 - CCNA_00534 0.61 -0.1 546,939 - CCNA_00534 0.61 +4.1 546,950 + CCNA_00534 0.62 +1.3 547,055 + CCNA_00534 0.72 +2.7 547,066 - CCNA_00534 0.74 +2.5 547,082 + CCNA_00534 0.75 +0.3 547,082 + CCNA_00534 0.75 +0.5 547,084 + CCNA_00534 0.75 -0.2 547,090 - CCNA_00534 0.76 +4.1 547,096 - CCNA_00534 0.76 +2.6 547,151 - CCNA_00534 0.82 -0.6 547,181 + CCNA_00534 0.85 +1.0 547,181 + CCNA_00534 0.85 +2.8 547,216 - CCNA_00534 0.88 -0.6 547,240 + +0.2 547,240 + +1.5 547,240 + +1.7 547,261 - +0.6 547,261 - +1.6 547,263 + -1.6 547,263 + -2.4 547,263 - +7.0 547,268 + -2.2 547,268 + -1.4 547,276 - -2.4 547,283 - -1.2 547,289 + -1.5 547,302 - +4.1 547,322 + -1.9 547,330 - -0.2 547,330 - -1.6 547,332 + +0.6 547,339 - -3.0 547,340 - +0.6 547,344 + +0.2 547,387 + +0.4 547,388 - -1.3 547,419 - CCNA_00535 0.25 -0.8 547,500 + CCNA_00535 0.76 -3.7 547,503 + CCNA_00535 0.78 -1.4 547,615 + -1.1
Or see this region's nucleotide sequence