Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00492

Experiment: PYE 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00490 and CCNA_00491 are separated by 147 nucleotidesCCNA_00491 and CCNA_00492 are separated by 195 nucleotidesCCNA_00492 and CCNA_00493 are separated by 2 nucleotidesCCNA_00493 and CCNA_00494 are separated by 6 nucleotidesCCNA_00494 and CCNA_00495 are separated by 52 nucleotides CCNA_00490: CCNA_00490 - hypothetical protein, at 507,838 to 508,722 _00490 CCNA_00491: CCNA_00491 - GTP cyclohydrolase I, at 508,870 to 509,508 _00491 CCNA_00492: CCNA_00492 - cysteinyl-tRNA synthetase, at 509,704 to 511,095 _00492 CCNA_00493: CCNA_00493 - putative polyketide cyclase-dehydrase/lipid transport protein, at 511,098 to 511,559 _00493 CCNA_00494: CCNA_00494 - transport protein, at 511,566 to 512,027 _00494 CCNA_00495: CCNA_00495 - putative membrane protein insertion efficiency factor YidD, at 512,080 to 512,334 _00495 Position (kb) 509 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 508.712 kb on - strandat 508.717 kb on + strandat 508.717 kb on + strandat 508.724 kb on - strandat 508.725 kb on - strandat 508.729 kb on + strandat 508.729 kb on + strandat 508.729 kb on + strandat 508.737 kb on - strandat 508.737 kb on - strandat 508.737 kb on - strandat 508.762 kb on - strandat 508.771 kb on + strandat 508.771 kb on + strandat 508.771 kb on + strandat 508.771 kb on + strandat 508.779 kb on - strandat 508.779 kb on - strandat 508.779 kb on - strandat 508.791 kb on - strandat 508.791 kb on - strandat 508.798 kb on - strandat 508.808 kb on + strandat 508.816 kb on - strandat 508.831 kb on - strandat 508.834 kb on + strandat 508.842 kb on - strandat 508.867 kb on - strandat 508.879 kb on + strandat 509.557 kb on + strandat 509.652 kb on - strandat 509.652 kb on - strandat 509.655 kb on - strandat 509.668 kb on + strandat 509.668 kb on + strandat 509.668 kb on + strandat 509.676 kb on + strandat 509.676 kb on + strandat 509.709 kb on - strandat 509.709 kb on - strandat 509.709 kb on - strandat 511.103 kb on - strandat 511.110 kb on + strandat 511.110 kb on + strandat 511.116 kb on - strandat 511.116 kb on - strandat 511.118 kb on - strandat 511.118 kb on - strandat 511.123 kb on + strandat 511.134 kb on - strandat 511.139 kb on + strandat 511.161 kb on - strand, within CCNA_00493at 511.175 kb on + strand, within CCNA_00493at 511.175 kb on + strand, within CCNA_00493at 511.188 kb on - strand, within CCNA_00493at 511.219 kb on + strand, within CCNA_00493at 511.251 kb on - strand, within CCNA_00493at 511.253 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.301 kb on - strand, within CCNA_00493at 511.301 kb on - strand, within CCNA_00493at 511.414 kb on + strand, within CCNA_00493at 511.416 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.456 kb on + strand, within CCNA_00493at 511.472 kb on + strand, within CCNA_00493at 511.483 kb on + strand, within CCNA_00493at 511.517 kb on + strandat 511.517 kb on + strandat 511.517 kb on + strandat 511.525 kb on - strandat 511.525 kb on - strandat 511.526 kb on + strandat 511.585 kb on - strandat 511.585 kb on - strandat 511.981 kb on - strandat 512.003 kb on + strandat 512.037 kb on + strandat 512.037 kb on + strandat 512.053 kb on - strandat 512.055 kb on - strandat 512.077 kb on + strandat 512.088 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days
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508,712 - -1.9
508,717 + -1.4
508,717 + -1.0
508,724 - -0.8
508,725 - -1.2
508,729 + -2.2
508,729 + -0.4
508,729 + +2.5
508,737 - -1.4
508,737 - +0.5
508,737 - -0.5
508,762 - +0.5
508,771 + +0.3
508,771 + +1.6
508,771 + -2.3
508,771 + -1.8
508,779 - -0.2
508,779 - +1.1
508,779 - -0.6
508,791 - -0.5
508,791 - -0.3
508,798 - +0.5
508,808 + +0.1
508,816 - -0.2
508,831 - -0.6
508,834 + +0.2
508,842 - +0.2
508,867 - +1.3
508,879 + +1.0
509,557 + +1.5
509,652 - -1.4
509,652 - -0.2
509,655 - -1.8
509,668 + -0.3
509,668 + +2.5
509,668 + +0.5
509,676 + +0.1
509,676 + -1.6
509,709 - -0.9
509,709 - -1.8
509,709 - +2.5
511,103 - -2.3
511,110 + -0.5
511,110 + -0.6
511,116 - -2.2
511,116 - -0.6
511,118 - +0.6
511,118 - -0.8
511,123 + -1.2
511,134 - -1.3
511,139 + +1.4
511,161 - CCNA_00493 0.14 -1.5
511,175 + CCNA_00493 0.17 -2.0
511,175 + CCNA_00493 0.17 -2.3
511,188 - CCNA_00493 0.19 +1.5
511,219 + CCNA_00493 0.26 -1.5
511,251 - CCNA_00493 0.33 +2.5
511,253 + CCNA_00493 0.34 -1.7
511,293 + CCNA_00493 0.42 -2.0
511,293 + CCNA_00493 0.42 -0.8
511,293 + CCNA_00493 0.42 -1.5
511,293 + CCNA_00493 0.42 -0.1
511,293 + CCNA_00493 0.42 +1.1
511,293 + CCNA_00493 0.42 -0.6
511,293 + CCNA_00493 0.42 -2.0
511,293 + CCNA_00493 0.42 -0.8
511,301 - CCNA_00493 0.44 +2.0
511,301 - CCNA_00493 0.44 +0.2
511,414 + CCNA_00493 0.68 -0.0
511,416 + CCNA_00493 0.69 -1.5
511,424 + CCNA_00493 0.71 -0.6
511,424 + CCNA_00493 0.71 -1.3
511,424 + CCNA_00493 0.71 -0.5
511,424 + CCNA_00493 0.71 -1.3
511,424 + CCNA_00493 0.71 -2.3
511,432 - CCNA_00493 0.72 -0.9
511,432 - CCNA_00493 0.72 -1.0
511,432 - CCNA_00493 0.72 +1.2
511,432 - CCNA_00493 0.72 -0.6
511,432 - CCNA_00493 0.72 -0.8
511,432 - CCNA_00493 0.72 -1.4
511,456 + CCNA_00493 0.77 +0.3
511,472 + CCNA_00493 0.81 -1.0
511,483 + CCNA_00493 0.83 +1.1
511,517 + +1.9
511,517 + -1.4
511,517 + -0.5
511,525 - +2.5
511,525 - +1.0
511,526 + +1.1
511,585 - -2.5
511,585 - -1.3
511,981 - -2.0
512,003 + +0.7
512,037 + +0.9
512,037 + -0.1
512,053 - -1.0
512,055 - -0.4
512,077 + +0.7
512,088 + +1.7

Or see this region's nucleotide sequence