Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00433

Experiment: PYE 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00431 and CCNA_00432 are separated by 272 nucleotidesCCNA_00432 and CCNA_00433 are separated by 97 nucleotidesCCNA_00433 and CCNA_00434 are separated by 62 nucleotides CCNA_00431: CCNA_00431 - hypothetical protein, at 437,761 to 437,883 _00431 CCNA_00432: CCNA_00432 - AsnC-family transcriptional regulator, at 438,156 to 438,650 _00432 CCNA_00433: CCNA_00433 - type 1 capsular polysaccharide biosynthesis protein J, at 438,748 to 439,005 _00433 CCNA_00434: CCNA_00434 - conserved membrane-spanning protein, at 439,068 to 440,003 _00434 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 437.765 kb on + strandat 437.777 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.807 kb on + strand, within CCNA_00431at 437.860 kb on - strand, within CCNA_00431at 437.860 kb on - strand, within CCNA_00431at 437.860 kb on - strandat 437.860 kb on - strand, within CCNA_00431at 437.865 kb on - strand, within CCNA_00431at 437.903 kb on + strandat 437.903 kb on + strandat 437.931 kb on + strandat 437.939 kb on - strandat 437.939 kb on - strandat 437.969 kb on - strandat 437.986 kb on + strandat 437.986 kb on + strandat 437.994 kb on - strandat 437.994 kb on - strandat 438.030 kb on + strandat 438.084 kb on - strandat 438.113 kb on + strandat 438.189 kb on - strandat 438.195 kb on - strandat 438.195 kb on - strandat 438.218 kb on + strand, within CCNA_00432at 438.241 kb on - strand, within CCNA_00432at 438.243 kb on + strand, within CCNA_00432at 438.246 kb on - strand, within CCNA_00432at 438.251 kb on - strand, within CCNA_00432at 438.264 kb on + strand, within CCNA_00432at 438.272 kb on - strand, within CCNA_00432at 438.272 kb on - strand, within CCNA_00432at 438.292 kb on + strand, within CCNA_00432at 438.292 kb on + strand, within CCNA_00432at 438.292 kb on + strand, within CCNA_00432at 438.293 kb on - strand, within CCNA_00432at 438.300 kb on - strand, within CCNA_00432at 438.300 kb on - strand, within CCNA_00432at 438.300 kb on - strand, within CCNA_00432at 438.348 kb on - strand, within CCNA_00432at 438.352 kb on + strand, within CCNA_00432at 438.352 kb on + strand, within CCNA_00432at 438.360 kb on - strand, within CCNA_00432at 438.360 kb on - strand, within CCNA_00432at 438.382 kb on - strand, within CCNA_00432at 438.387 kb on - strand, within CCNA_00432at 438.392 kb on - strand, within CCNA_00432at 438.435 kb on + strand, within CCNA_00432at 438.435 kb on + strand, within CCNA_00432at 438.435 kb on + strand, within CCNA_00432at 438.442 kb on - strand, within CCNA_00432at 438.442 kb on - strand, within CCNA_00432at 438.443 kb on - strand, within CCNA_00432at 438.453 kb on + strand, within CCNA_00432at 438.480 kb on - strand, within CCNA_00432at 438.480 kb on - strand, within CCNA_00432at 438.506 kb on + strand, within CCNA_00432at 438.519 kb on + strand, within CCNA_00432at 438.524 kb on + strand, within CCNA_00432at 438.524 kb on + strand, within CCNA_00432at 438.524 kb on + strandat 438.524 kb on + strandat 438.527 kb on - strand, within CCNA_00432at 438.528 kb on - strand, within CCNA_00432at 438.529 kb on + strand, within CCNA_00432at 438.530 kb on + strand, within CCNA_00432at 438.532 kb on - strand, within CCNA_00432at 438.532 kb on - strand, within CCNA_00432at 438.555 kb on + strand, within CCNA_00432at 438.563 kb on - strand, within CCNA_00432at 438.677 kb on + strandat 438.746 kb on + strandat 438.746 kb on + strandat 438.746 kb on + strandat 438.754 kb on - strandat 438.754 kb on - strandat 438.754 kb on - strandat 438.754 kb on - strandat 438.754 kb on - strandat 438.754 kb on - strandat 438.756 kb on + strandat 438.801 kb on + strand, within CCNA_00433at 438.801 kb on + strand, within CCNA_00433at 438.801 kb on + strand, within CCNA_00433at 438.801 kb on + strand, within CCNA_00433at 438.809 kb on - strand, within CCNA_00433at 438.809 kb on - strand, within CCNA_00433at 438.809 kb on - strand, within CCNA_00433at 438.809 kb on - strand, within CCNA_00433at 438.809 kb on - strand, within CCNA_00433at 438.809 kb on - strand, within CCNA_00433at 438.813 kb on + strand, within CCNA_00433at 438.814 kb on + strand, within CCNA_00433at 438.814 kb on + strand, within CCNA_00433at 438.814 kb on + strand, within CCNA_00433at 438.814 kb on + strand, within CCNA_00433at 438.821 kb on + strand, within CCNA_00433at 438.822 kb on - strand, within CCNA_00433at 438.822 kb on - strand, within CCNA_00433at 438.837 kb on + strand, within CCNA_00433at 438.847 kb on + strand, within CCNA_00433at 438.847 kb on + strand, within CCNA_00433at 438.847 kb on + strand, within CCNA_00433at 438.847 kb on + strand, within CCNA_00433at 438.847 kb on + strand, within CCNA_00433at 438.847 kb on + strand, within CCNA_00433at 438.852 kb on + strand, within CCNA_00433at 438.855 kb on - strand, within CCNA_00433at 438.855 kb on - strand, within CCNA_00433at 438.855 kb on - strand, within CCNA_00433at 438.855 kb on - strand, within CCNA_00433at 438.855 kb on - strand, within CCNA_00433at 438.855 kb on - strand, within CCNA_00433at 438.860 kb on - strand, within CCNA_00433at 438.861 kb on + strand, within CCNA_00433at 438.865 kb on - strand, within CCNA_00433at 438.871 kb on + strand, within CCNA_00433at 438.871 kb on + strand, within CCNA_00433at 438.871 kb on + strand, within CCNA_00433at 438.879 kb on - strand, within CCNA_00433at 438.879 kb on - strand, within CCNA_00433at 438.879 kb on - strand, within CCNA_00433at 438.891 kb on - strand, within CCNA_00433at 438.904 kb on - strand, within CCNA_00433at 438.910 kb on - strand, within CCNA_00433at 438.928 kb on + strand, within CCNA_00433at 438.933 kb on + strand, within CCNA_00433at 438.939 kb on + strand, within CCNA_00433at 438.951 kb on + strand, within CCNA_00433at 438.951 kb on + strand, within CCNA_00433at 438.955 kb on + strand, within CCNA_00433at 439.022 kb on + strandat 439.037 kb on + strandat 439.064 kb on + strandat 439.064 kb on + strandat 439.072 kb on - strandat 439.072 kb on - strandat 439.087 kb on - strandat 439.091 kb on + strandat 439.130 kb on + strandat 439.136 kb on + strandat 439.146 kb on - strandat 439.191 kb on - strand, within CCNA_00434at 439.198 kb on - strand, within CCNA_00434at 439.201 kb on + strand, within CCNA_00434at 439.232 kb on - strand, within CCNA_00434at 439.239 kb on - strand, within CCNA_00434at 439.244 kb on - strandat 439.263 kb on + strand, within CCNA_00434at 439.271 kb on - strand, within CCNA_00434at 439.281 kb on - strand, within CCNA_00434at 439.286 kb on + strand, within CCNA_00434at 439.286 kb on + strand, within CCNA_00434at 439.341 kb on + strand, within CCNA_00434at 439.341 kb on + strand, within CCNA_00434at 439.341 kb on + strand, within CCNA_00434at 439.341 kb on + strand, within CCNA_00434at 439.341 kb on + strand, within CCNA_00434at 439.349 kb on - strand, within CCNA_00434at 439.365 kb on + strand, within CCNA_00434at 439.377 kb on + strand, within CCNA_00434at 439.385 kb on - strand, within CCNA_00434at 439.410 kb on + strand, within CCNA_00434at 439.431 kb on + strand, within CCNA_00434at 439.436 kb on + strand, within CCNA_00434at 439.449 kb on + strand, within CCNA_00434at 439.451 kb on - strand, within CCNA_00434at 439.459 kb on + strand, within CCNA_00434at 439.464 kb on + strand, within CCNA_00434at 439.469 kb on + strand, within CCNA_00434at 439.477 kb on - strand, within CCNA_00434at 439.480 kb on + strand, within CCNA_00434at 439.480 kb on + strand, within CCNA_00434at 439.480 kb on + strand, within CCNA_00434at 439.490 kb on + strand, within CCNA_00434at 439.490 kb on + strand, within CCNA_00434at 439.490 kb on + strand, within CCNA_00434at 439.498 kb on - strand, within CCNA_00434at 439.509 kb on - strand, within CCNA_00434at 439.538 kb on + strand, within CCNA_00434at 439.538 kb on + strand, within CCNA_00434at 439.538 kb on + strand, within CCNA_00434at 439.540 kb on + strand, within CCNA_00434at 439.546 kb on - strand, within CCNA_00434at 439.546 kb on - strand, within CCNA_00434at 439.652 kb on + strand, within CCNA_00434at 439.669 kb on - strand, within CCNA_00434at 439.689 kb on - strand, within CCNA_00434at 439.702 kb on + strand, within CCNA_00434at 439.707 kb on + strand, within CCNA_00434at 439.710 kb on - strand, within CCNA_00434at 439.710 kb on - strand, within CCNA_00434at 439.715 kb on - strand, within CCNA_00434at 439.717 kb on + strand, within CCNA_00434at 439.720 kb on - strand, within CCNA_00434at 439.722 kb on + strand, within CCNA_00434at 439.730 kb on - strand, within CCNA_00434at 439.744 kb on - strand, within CCNA_00434at 439.801 kb on + strand, within CCNA_00434at 439.809 kb on - strand, within CCNA_00434at 439.826 kb on + strand, within CCNA_00434at 439.828 kb on + strand, within CCNA_00434at 439.828 kb on + strand, within CCNA_00434at 439.845 kb on + strand, within CCNA_00434at 439.854 kb on - strand, within CCNA_00434at 439.878 kb on - strand, within CCNA_00434at 439.905 kb on - strand, within CCNA_00434at 439.915 kb on + strandat 439.923 kb on - strandat 439.952 kb on + strandat 439.956 kb on - strandat 440.004 kb on + strandat 440.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days
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437,765 + +0.4
437,777 + CCNA_00431 0.13 -0.0
437,779 + CCNA_00431 0.15 +1.3
437,779 + CCNA_00431 0.15 +3.9
437,779 + CCNA_00431 0.15 +1.1
437,779 + CCNA_00431 0.15 +1.9
437,779 + CCNA_00431 0.15 -0.5
437,779 + CCNA_00431 0.15 -0.8
437,779 + CCNA_00431 0.15 -0.2
437,779 + CCNA_00431 0.15 +1.6
437,779 + CCNA_00431 0.15 -1.0
437,779 + CCNA_00431 0.15 -0.8
437,779 + CCNA_00431 0.15 +1.5
437,789 + CCNA_00431 0.23 +0.2
437,789 + CCNA_00431 0.23 +1.4
437,789 + CCNA_00431 0.23 +0.2
437,789 + CCNA_00431 0.23 -1.4
437,789 + CCNA_00431 0.23 +2.3
437,789 + CCNA_00431 0.23 -0.6
437,789 + CCNA_00431 0.23 +2.5
437,789 + CCNA_00431 0.23 -1.7
437,807 + CCNA_00431 0.37 -0.8
437,860 - CCNA_00431 0.80 +2.3
437,860 - CCNA_00431 0.80 -1.3
437,860 - +0.5
437,860 - CCNA_00431 0.80 +0.2
437,865 - CCNA_00431 0.85 -2.0
437,903 + -1.0
437,903 + -1.0
437,931 + +0.3
437,939 - +0.9
437,939 - +0.3
437,969 - -1.5
437,986 + -0.5
437,986 + -2.0
437,994 - -1.4
437,994 - -2.7
438,030 + -0.6
438,084 - -1.7
438,113 + -1.2
438,189 - +1.1
438,195 - +2.0
438,195 - +0.1
438,218 + CCNA_00432 0.13 +2.5
438,241 - CCNA_00432 0.17 +0.9
438,243 + CCNA_00432 0.18 +1.6
438,246 - CCNA_00432 0.18 +0.7
438,251 - CCNA_00432 0.19 +0.7
438,264 + CCNA_00432 0.22 +0.9
438,272 - CCNA_00432 0.23 +0.4
438,272 - CCNA_00432 0.23 +0.2
438,292 + CCNA_00432 0.27 +0.5
438,292 + CCNA_00432 0.27 -0.6
438,292 + CCNA_00432 0.27 -0.6
438,293 - CCNA_00432 0.28 +0.6
438,300 - CCNA_00432 0.29 +0.7
438,300 - CCNA_00432 0.29 +1.4
438,300 - CCNA_00432 0.29 +0.4
438,348 - CCNA_00432 0.39 +1.1
438,352 + CCNA_00432 0.40 -1.3
438,352 + CCNA_00432 0.40 -1.5
438,360 - CCNA_00432 0.41 +1.3
438,360 - CCNA_00432 0.41 +1.2
438,382 - CCNA_00432 0.46 -0.3
438,387 - CCNA_00432 0.47 +1.2
438,392 - CCNA_00432 0.48 +1.8
438,435 + CCNA_00432 0.56 -0.8
438,435 + CCNA_00432 0.56 +0.1
438,435 + CCNA_00432 0.56 +0.5
438,442 - CCNA_00432 0.58 -1.2
438,442 - CCNA_00432 0.58 -2.8
438,443 - CCNA_00432 0.58 +0.1
438,453 + CCNA_00432 0.60 +2.5
438,480 - CCNA_00432 0.65 +0.7
438,480 - CCNA_00432 0.65 +0.3
438,506 + CCNA_00432 0.71 +0.6
438,519 + CCNA_00432 0.73 -0.7
438,524 + CCNA_00432 0.74 -1.2
438,524 + CCNA_00432 0.74 +2.5
438,524 + -1.0
438,524 + -0.1
438,527 - CCNA_00432 0.75 +0.9
438,528 - CCNA_00432 0.75 +0.5
438,529 + CCNA_00432 0.75 +3.1
438,530 + CCNA_00432 0.76 +0.5
438,532 - CCNA_00432 0.76 +0.2
438,532 - CCNA_00432 0.76 +3.1
438,555 + CCNA_00432 0.81 -1.9
438,563 - CCNA_00432 0.82 +2.3
438,677 + -0.0
438,746 + +1.9
438,746 + -0.9
438,746 + +0.3
438,754 - -0.5
438,754 - +2.5
438,754 - +2.2
438,754 - +2.7
438,754 - +0.9
438,754 - -1.0
438,756 + -1.2
438,801 + CCNA_00433 0.21 +0.9
438,801 + CCNA_00433 0.21 +1.4
438,801 + CCNA_00433 0.21 -0.8
438,801 + CCNA_00433 0.21 +1.0
438,809 - CCNA_00433 0.24 +0.2
438,809 - CCNA_00433 0.24 -2.9
438,809 - CCNA_00433 0.24 -1.8
438,809 - CCNA_00433 0.24 -0.5
438,809 - CCNA_00433 0.24 +3.0
438,809 - CCNA_00433 0.24 +0.8
438,813 + CCNA_00433 0.25 +3.0
438,814 + CCNA_00433 0.26 +3.0
438,814 + CCNA_00433 0.26 -1.9
438,814 + CCNA_00433 0.26 +2.9
438,814 + CCNA_00433 0.26 -0.2
438,821 + CCNA_00433 0.28 +1.4
438,822 - CCNA_00433 0.29 -1.1
438,822 - CCNA_00433 0.29 +2.1
438,837 + CCNA_00433 0.34 +1.5
438,847 + CCNA_00433 0.38 +1.0
438,847 + CCNA_00433 0.38 -2.2
438,847 + CCNA_00433 0.38 +0.3
438,847 + CCNA_00433 0.38 +2.7
438,847 + CCNA_00433 0.38 +0.1
438,847 + CCNA_00433 0.38 +0.2
438,852 + CCNA_00433 0.40 +1.3
438,855 - CCNA_00433 0.41 -0.1
438,855 - CCNA_00433 0.41 +2.1
438,855 - CCNA_00433 0.41 -2.2
438,855 - CCNA_00433 0.41 -1.8
438,855 - CCNA_00433 0.41 -0.5
438,855 - CCNA_00433 0.41 -1.5
438,860 - CCNA_00433 0.43 -2.0
438,861 + CCNA_00433 0.44 -1.0
438,865 - CCNA_00433 0.45 -3.6
438,871 + CCNA_00433 0.48 -0.5
438,871 + CCNA_00433 0.48 +1.5
438,871 + CCNA_00433 0.48 +0.9
438,879 - CCNA_00433 0.51 +1.9
438,879 - CCNA_00433 0.51 +0.9
438,879 - CCNA_00433 0.51 +1.9
438,891 - CCNA_00433 0.55 +0.8
438,904 - CCNA_00433 0.60 +1.8
438,910 - CCNA_00433 0.63 -1.2
438,928 + CCNA_00433 0.70 +0.1
438,933 + CCNA_00433 0.72 -0.1
438,939 + CCNA_00433 0.74 -0.8
438,951 + CCNA_00433 0.79 -1.1
438,951 + CCNA_00433 0.79 -0.2
438,955 + CCNA_00433 0.80 +1.3
439,022 + +0.5
439,037 + +1.1
439,064 + -0.2
439,064 + +1.2
439,072 - +3.1
439,072 - -0.8
439,087 - +1.0
439,091 + +0.9
439,130 + +0.9
439,136 + -0.7
439,146 - +1.1
439,191 - CCNA_00434 0.13 -1.1
439,198 - CCNA_00434 0.14 -1.2
439,201 + CCNA_00434 0.14 -0.2
439,232 - CCNA_00434 0.18 -2.1
439,239 - CCNA_00434 0.18 +2.5
439,244 - -1.8
439,263 + CCNA_00434 0.21 -0.7
439,271 - CCNA_00434 0.22 +0.9
439,281 - CCNA_00434 0.23 -1.1
439,286 + CCNA_00434 0.23 -0.6
439,286 + CCNA_00434 0.23 +2.0
439,341 + CCNA_00434 0.29 +0.3
439,341 + CCNA_00434 0.29 +2.1
439,341 + CCNA_00434 0.29 +0.5
439,341 + CCNA_00434 0.29 +0.9
439,341 + CCNA_00434 0.29 +1.1
439,349 - CCNA_00434 0.30 +0.1
439,365 + CCNA_00434 0.32 -0.5
439,377 + CCNA_00434 0.33 -1.9
439,385 - CCNA_00434 0.34 +0.0
439,410 + CCNA_00434 0.37 -0.9
439,431 + CCNA_00434 0.39 -0.6
439,436 + CCNA_00434 0.39 +0.3
439,449 + CCNA_00434 0.41 -3.3
439,451 - CCNA_00434 0.41 -0.3
439,459 + CCNA_00434 0.42 -2.3
439,464 + CCNA_00434 0.42 -0.1
439,469 + CCNA_00434 0.43 +0.1
439,477 - CCNA_00434 0.44 +1.1
439,480 + CCNA_00434 0.44 -0.9
439,480 + CCNA_00434 0.44 +0.2
439,480 + CCNA_00434 0.44 -0.6
439,490 + CCNA_00434 0.45 +1.4
439,490 + CCNA_00434 0.45 +2.2
439,490 + CCNA_00434 0.45 -1.2
439,498 - CCNA_00434 0.46 -0.1
439,509 - CCNA_00434 0.47 -1.7
439,538 + CCNA_00434 0.50 -1.8
439,538 + CCNA_00434 0.50 -2.0
439,538 + CCNA_00434 0.50 +0.9
439,540 + CCNA_00434 0.50 +1.6
439,546 - CCNA_00434 0.51 -1.3
439,546 - CCNA_00434 0.51 +1.5
439,652 + CCNA_00434 0.62 -1.4
439,669 - CCNA_00434 0.64 -0.7
439,689 - CCNA_00434 0.66 +2.5
439,702 + CCNA_00434 0.68 +0.1
439,707 + CCNA_00434 0.68 +0.8
439,710 - CCNA_00434 0.69 +2.5
439,710 - CCNA_00434 0.69 -0.2
439,715 - CCNA_00434 0.69 -1.9
439,717 + CCNA_00434 0.69 +0.1
439,720 - CCNA_00434 0.70 +2.5
439,722 + CCNA_00434 0.70 +0.3
439,730 - CCNA_00434 0.71 -2.3
439,744 - CCNA_00434 0.72 +0.5
439,801 + CCNA_00434 0.78 +0.2
439,809 - CCNA_00434 0.79 +0.1
439,826 + CCNA_00434 0.81 +0.4
439,828 + CCNA_00434 0.81 -1.4
439,828 + CCNA_00434 0.81 -0.1
439,845 + CCNA_00434 0.83 -1.9
439,854 - CCNA_00434 0.84 -1.3
439,878 - CCNA_00434 0.87 +5.1
439,905 - CCNA_00434 0.89 +0.9
439,915 + -0.8
439,923 - -0.1
439,952 + -2.3
439,956 - -0.9
440,004 + -2.5
440,004 + -0.9

Or see this region's nucleotide sequence