Experiment: PYE 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00343 and CCNA_00344 are separated by 59 nucleotides CCNA_00344 and CCNA_00345 are separated by 7 nucleotides
CCNA_00343: CCNA_00343 - dihydrolipoamide succinyltransferase, at 357,720 to 358,928
_00343
CCNA_00344: CCNA_00344 - hypothetical protein, at 358,988 to 359,335
_00344
CCNA_00345: CCNA_00345 - alpha/beta family hydrolase, at 359,343 to 360,176
_00345
Position (kb) 358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 358.933 kb on + strand at 358.980 kb on + strand at 358.988 kb on - strand at 358.990 kb on + strand at 358.990 kb on + strand at 358.990 kb on + strand at 358.990 kb on + strand at 358.990 kb on + strand at 358.990 kb on + strand at 358.997 kb on + strand at 358.998 kb on - strand at 358.998 kb on - strand at 358.998 kb on - strand at 358.998 kb on - strand at 358.998 kb on - strand at 359.001 kb on + strand at 359.015 kb on - strand at 359.042 kb on + strand, within CCNA_00344 at 359.049 kb on - strand, within CCNA_00344 at 359.050 kb on - strand, within CCNA_00344 at 359.050 kb on - strand, within CCNA_00344 at 359.050 kb on - strand, within CCNA_00344 at 359.050 kb on - strand, within CCNA_00344 at 359.099 kb on - strand, within CCNA_00344 at 359.127 kb on - strand, within CCNA_00344 at 359.133 kb on + strand, within CCNA_00344 at 359.163 kb on - strand, within CCNA_00344 at 359.167 kb on + strand, within CCNA_00344 at 359.175 kb on - strand, within CCNA_00344 at 359.175 kb on - strand, within CCNA_00344 at 359.192 kb on + strand, within CCNA_00344 at 359.205 kb on - strand, within CCNA_00344 at 359.277 kb on - strand, within CCNA_00344 at 359.324 kb on + strand at 359.330 kb on + strand at 359.361 kb on + strand at 359.388 kb on - strand at 359.407 kb on + strand at 359.407 kb on + strand at 359.415 kb on - strand at 359.434 kb on + strand, within CCNA_00345 at 359.445 kb on + strand, within CCNA_00345 at 359.475 kb on - strand, within CCNA_00345 at 359.487 kb on - strand, within CCNA_00345 at 359.497 kb on + strand, within CCNA_00345 at 359.499 kb on + strand, within CCNA_00345 at 359.505 kb on - strand, within CCNA_00345 at 359.507 kb on - strand, within CCNA_00345 at 359.530 kb on + strand, within CCNA_00345 at 359.538 kb on - strand, within CCNA_00345 at 359.542 kb on - strand, within CCNA_00345 at 359.558 kb on - strand, within CCNA_00345 at 359.608 kb on + strand, within CCNA_00345 at 359.612 kb on + strand at 359.618 kb on + strand, within CCNA_00345 at 359.618 kb on + strand, within CCNA_00345 at 359.626 kb on - strand, within CCNA_00345 at 359.689 kb on - strand, within CCNA_00345 at 359.697 kb on + strand, within CCNA_00345 at 359.718 kb on + strand, within CCNA_00345 at 359.741 kb on - strand, within CCNA_00345 at 359.752 kb on + strand, within CCNA_00345 at 359.754 kb on - strand, within CCNA_00345 at 359.760 kb on - strand, within CCNA_00345 at 359.760 kb on - strand, within CCNA_00345 at 359.760 kb on - strand, within CCNA_00345 at 359.760 kb on - strand, within CCNA_00345 at 359.796 kb on + strand, within CCNA_00345 at 359.801 kb on + strand, within CCNA_00345 at 359.804 kb on - strand, within CCNA_00345 at 359.820 kb on + strand, within CCNA_00345 at 359.827 kb on - strand, within CCNA_00345 at 359.833 kb on + strand, within CCNA_00345 at 359.833 kb on + strand, within CCNA_00345 at 359.841 kb on - strand, within CCNA_00345 at 359.841 kb on - strand, within CCNA_00345 at 359.841 kb on - strand, within CCNA_00345 at 359.841 kb on - strand, within CCNA_00345 at 359.841 kb on - strand, within CCNA_00345 at 359.844 kb on + strand, within CCNA_00345 at 359.877 kb on - strand, within CCNA_00345 at 359.901 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.902 kb on + strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.910 kb on - strand, within CCNA_00345 at 359.922 kb on - strand, within CCNA_00345 at 359.981 kb on + strand at 359.981 kb on + strand, within CCNA_00345 at 359.984 kb on - strand, within CCNA_00345 at 359.984 kb on - strand, within CCNA_00345 at 359.991 kb on + strand, within CCNA_00345 at 359.999 kb on - strand, within CCNA_00345 at 359.999 kb on - strand, within CCNA_00345 at 359.999 kb on - strand, within CCNA_00345 at 360.037 kb on + strand, within CCNA_00345 at 360.063 kb on + strand, within CCNA_00345 at 360.063 kb on - strand, within CCNA_00345 at 360.063 kb on - strand, within CCNA_00345 at 360.071 kb on - strand, within CCNA_00345 at 360.123 kb on - strand at 360.148 kb on + strand at 360.161 kb on - strand at 360.161 kb on - strand at 360.161 kb on - strand at 360.161 kb on - strand at 360.166 kb on + strand at 360.166 kb on - strand at 360.178 kb on + strand at 360.178 kb on + strand at 360.185 kb on + strand at 360.198 kb on - strand at 360.206 kb on - strand at 360.207 kb on + strand at 360.207 kb on + strand at 360.215 kb on - strand at 360.226 kb on + strand at 360.231 kb on + strand at 360.239 kb on - strand at 360.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days remove 358,933 + +1.1 358,980 + +0.4 358,988 - +0.1 358,990 + -0.4 358,990 + -0.3 358,990 + -2.2 358,990 + -0.1 358,990 + -0.4 358,990 + +1.1 358,997 + +0.4 358,998 - -1.0 358,998 - +0.1 358,998 - -2.4 358,998 - -0.1 358,998 - +0.6 359,001 + +1.1 359,015 - +1.8 359,042 + CCNA_00344 0.16 +1.5 359,049 - CCNA_00344 0.18 -2.5 359,050 - CCNA_00344 0.18 -2.6 359,050 - CCNA_00344 0.18 -1.6 359,050 - CCNA_00344 0.18 -0.4 359,050 - CCNA_00344 0.18 +1.2 359,099 - CCNA_00344 0.32 -0.9 359,127 - CCNA_00344 0.40 -0.8 359,133 + CCNA_00344 0.42 +1.9 359,163 - CCNA_00344 0.50 +1.5 359,167 + CCNA_00344 0.51 +0.9 359,175 - CCNA_00344 0.54 +4.0 359,175 - CCNA_00344 0.54 -0.0 359,192 + CCNA_00344 0.59 +1.4 359,205 - CCNA_00344 0.62 +1.1 359,277 - CCNA_00344 0.83 +2.4 359,324 + +0.1 359,330 + +1.5 359,361 + -0.1 359,388 - -0.3 359,407 + -0.3 359,407 + +2.3 359,415 - -1.0 359,434 + CCNA_00345 0.11 +0.1 359,445 + CCNA_00345 0.12 -0.4 359,475 - CCNA_00345 0.16 -2.3 359,487 - CCNA_00345 0.17 +1.6 359,497 + CCNA_00345 0.18 +0.5 359,499 + CCNA_00345 0.19 +0.8 359,505 - CCNA_00345 0.19 +0.2 359,507 - CCNA_00345 0.20 +1.5 359,530 + CCNA_00345 0.22 +1.3 359,538 - CCNA_00345 0.23 +1.3 359,542 - CCNA_00345 0.24 -1.5 359,558 - CCNA_00345 0.26 +0.2 359,608 + CCNA_00345 0.32 +2.2 359,612 + -2.6 359,618 + CCNA_00345 0.33 +2.2 359,618 + CCNA_00345 0.33 +1.8 359,626 - CCNA_00345 0.34 -1.8 359,689 - CCNA_00345 0.41 -3.2 359,697 + CCNA_00345 0.42 +0.4 359,718 + CCNA_00345 0.45 +1.1 359,741 - CCNA_00345 0.48 +0.6 359,752 + CCNA_00345 0.49 +1.4 359,754 - CCNA_00345 0.49 +0.3 359,760 - CCNA_00345 0.50 -1.7 359,760 - CCNA_00345 0.50 -0.0 359,760 - CCNA_00345 0.50 -0.5 359,760 - CCNA_00345 0.50 -1.4 359,796 + CCNA_00345 0.54 +0.4 359,801 + CCNA_00345 0.55 -1.4 359,804 - CCNA_00345 0.55 +0.9 359,820 + CCNA_00345 0.57 -1.0 359,827 - CCNA_00345 0.58 -0.4 359,833 + CCNA_00345 0.59 -3.0 359,833 + CCNA_00345 0.59 -0.6 359,841 - CCNA_00345 0.60 +3.6 359,841 - CCNA_00345 0.60 -0.9 359,841 - CCNA_00345 0.60 +1.4 359,841 - CCNA_00345 0.60 -1.9 359,841 - CCNA_00345 0.60 -1.5 359,844 + CCNA_00345 0.60 -1.1 359,877 - CCNA_00345 0.64 -0.7 359,901 + CCNA_00345 0.67 +0.3 359,902 + CCNA_00345 0.67 -1.7 359,902 + CCNA_00345 0.67 +0.6 359,902 + CCNA_00345 0.67 -0.2 359,902 + CCNA_00345 0.67 +2.7 359,902 + CCNA_00345 0.67 +0.3 359,902 + CCNA_00345 0.67 +0.1 359,902 + CCNA_00345 0.67 +1.6 359,902 + CCNA_00345 0.67 -2.4 359,902 + CCNA_00345 0.67 +0.1 359,902 + CCNA_00345 0.67 -0.9 359,902 + CCNA_00345 0.67 -0.4 359,910 - CCNA_00345 0.68 +0.2 359,910 - CCNA_00345 0.68 -1.2 359,910 - CCNA_00345 0.68 -1.4 359,910 - CCNA_00345 0.68 +0.4 359,910 - CCNA_00345 0.68 -0.7 359,910 - CCNA_00345 0.68 +0.8 359,910 - CCNA_00345 0.68 -1.5 359,910 - CCNA_00345 0.68 -2.9 359,910 - CCNA_00345 0.68 -1.5 359,910 - CCNA_00345 0.68 +2.4 359,910 - CCNA_00345 0.68 -2.2 359,910 - CCNA_00345 0.68 -0.2 359,922 - CCNA_00345 0.69 -2.1 359,981 + -2.0 359,981 + CCNA_00345 0.76 -0.6 359,984 - CCNA_00345 0.77 +0.8 359,984 - CCNA_00345 0.77 -0.2 359,991 + CCNA_00345 0.78 +0.3 359,999 - CCNA_00345 0.79 -1.8 359,999 - CCNA_00345 0.79 +0.6 359,999 - CCNA_00345 0.79 +0.3 360,037 + CCNA_00345 0.83 +0.4 360,063 + CCNA_00345 0.86 -0.3 360,063 - CCNA_00345 0.86 +0.6 360,063 - CCNA_00345 0.86 -0.9 360,071 - CCNA_00345 0.87 +1.9 360,123 - +0.8 360,148 + -0.3 360,161 - -0.5 360,161 - +0.6 360,161 - -1.2 360,161 - -1.0 360,166 + +0.2 360,166 - -0.7 360,178 + +1.1 360,178 + -1.0 360,185 + -1.3 360,198 - +3.3 360,206 - +0.3 360,207 + -0.7 360,207 + +2.4 360,215 - -3.2 360,226 + +2.4 360,231 + -2.4 360,239 - -3.0 360,255 - -0.6
Or see this region's nucleotide sequence