Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00302

Experiment: PYE 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00301 and CCNA_00302 are separated by 4 nucleotidesCCNA_00302 and CCNA_00303 are separated by 35 nucleotides CCNA_00301: CCNA_00301 - phosphotransferase family protein, at 314,615 to 315,697 _00301 CCNA_00302: CCNA_00302 - imidazolonepropionase-related amidohydrolase, at 315,702 to 316,991 _00302 CCNA_00303: CCNA_00303 - tetraacyldisaccharide-1-P 4'-kinase, at 317,027 to 318,034 _00303 Position (kb) 315 316 317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 314.739 kb on - strand, within CCNA_00301at 314.739 kb on - strand, within CCNA_00301at 314.745 kb on + strand, within CCNA_00301at 314.769 kb on - strand, within CCNA_00301at 314.802 kb on - strand, within CCNA_00301at 314.821 kb on - strand, within CCNA_00301at 314.864 kb on + strand, within CCNA_00301at 314.885 kb on - strand, within CCNA_00301at 314.889 kb on + strand, within CCNA_00301at 314.907 kb on - strand, within CCNA_00301at 314.907 kb on - strand, within CCNA_00301at 314.934 kb on - strand, within CCNA_00301at 314.936 kb on - strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.938 kb on + strand, within CCNA_00301at 314.946 kb on - strand, within CCNA_00301at 314.946 kb on - strand, within CCNA_00301at 314.946 kb on - strand, within CCNA_00301at 314.975 kb on + strand, within CCNA_00301at 314.975 kb on - strand, within CCNA_00301at 315.002 kb on + strand, within CCNA_00301at 315.032 kb on - strand, within CCNA_00301at 315.059 kb on + strand, within CCNA_00301at 315.067 kb on - strand, within CCNA_00301at 315.080 kb on - strand, within CCNA_00301at 315.088 kb on - strand, within CCNA_00301at 315.088 kb on - strand, within CCNA_00301at 315.093 kb on - strand, within CCNA_00301at 315.165 kb on + strand, within CCNA_00301at 315.175 kb on + strand, within CCNA_00301at 315.175 kb on + strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.183 kb on - strand, within CCNA_00301at 315.206 kb on - strand, within CCNA_00301at 315.259 kb on + strand, within CCNA_00301at 315.259 kb on + strand, within CCNA_00301at 315.294 kb on + strand, within CCNA_00301at 315.316 kb on + strand, within CCNA_00301at 315.332 kb on + strand, within CCNA_00301at 315.332 kb on + strand, within CCNA_00301at 315.346 kb on + strand, within CCNA_00301at 315.353 kb on + strand, within CCNA_00301at 315.353 kb on + strand, within CCNA_00301at 315.361 kb on - strand, within CCNA_00301at 315.399 kb on + strandat 315.408 kb on + strand, within CCNA_00301at 315.416 kb on - strand, within CCNA_00301at 315.416 kb on - strand, within CCNA_00301at 315.418 kb on + strand, within CCNA_00301at 315.430 kb on + strand, within CCNA_00301at 315.520 kb on + strand, within CCNA_00301at 315.543 kb on + strand, within CCNA_00301at 315.550 kb on + strand, within CCNA_00301at 315.577 kb on + strand, within CCNA_00301at 315.636 kb on - strandat 315.650 kb on + strandat 315.655 kb on + strandat 315.655 kb on + strandat 315.658 kb on - strandat 315.673 kb on - strandat 315.673 kb on - strandat 315.684 kb on + strandat 315.692 kb on - strandat 315.738 kb on + strandat 315.746 kb on - strandat 315.746 kb on - strandat 315.772 kb on - strandat 315.784 kb on - strandat 315.843 kb on + strand, within CCNA_00302at 315.843 kb on + strand, within CCNA_00302at 315.892 kb on - strand, within CCNA_00302at 315.931 kb on + strand, within CCNA_00302at 315.931 kb on + strand, within CCNA_00302at 315.931 kb on + strand, within CCNA_00302at 315.983 kb on - strand, within CCNA_00302at 316.028 kb on - strand, within CCNA_00302at 316.028 kb on - strand, within CCNA_00302at 316.028 kb on - strand, within CCNA_00302at 316.040 kb on - strand, within CCNA_00302at 316.068 kb on - strand, within CCNA_00302at 316.133 kb on - strand, within CCNA_00302at 316.167 kb on - strand, within CCNA_00302at 316.275 kb on - strand, within CCNA_00302at 316.336 kb on - strand, within CCNA_00302at 316.336 kb on - strand, within CCNA_00302at 316.353 kb on + strand, within CCNA_00302at 316.358 kb on + strand, within CCNA_00302at 316.358 kb on + strand, within CCNA_00302at 316.366 kb on - strand, within CCNA_00302at 316.366 kb on - strand, within CCNA_00302at 316.438 kb on + strand, within CCNA_00302at 316.438 kb on + strand, within CCNA_00302at 316.440 kb on - strand, within CCNA_00302at 316.447 kb on - strand, within CCNA_00302at 316.532 kb on - strand, within CCNA_00302at 316.553 kb on - strand, within CCNA_00302at 316.559 kb on + strand, within CCNA_00302at 316.567 kb on - strand, within CCNA_00302at 316.567 kb on - strand, within CCNA_00302at 316.567 kb on - strand, within CCNA_00302at 316.659 kb on - strand, within CCNA_00302at 316.680 kb on - strand, within CCNA_00302at 316.695 kb on - strand, within CCNA_00302at 316.721 kb on + strand, within CCNA_00302at 316.777 kb on + strand, within CCNA_00302at 316.808 kb on + strand, within CCNA_00302at 316.832 kb on + strand, within CCNA_00302at 316.861 kb on + strand, within CCNA_00302at 316.894 kb on + strandat 316.931 kb on - strandat 316.931 kb on - strandat 316.988 kb on - strandat 317.009 kb on + strandat 317.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days
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314,739 - CCNA_00301 0.11 -1.9
314,739 - CCNA_00301 0.11 -1.4
314,745 + CCNA_00301 0.12 -2.2
314,769 - CCNA_00301 0.14 +1.8
314,802 - CCNA_00301 0.17 -1.0
314,821 - CCNA_00301 0.19 -0.9
314,864 + CCNA_00301 0.23 -0.7
314,885 - CCNA_00301 0.25 +0.6
314,889 + CCNA_00301 0.25 -2.1
314,907 - CCNA_00301 0.27 +1.0
314,907 - CCNA_00301 0.27 +0.2
314,934 - CCNA_00301 0.29 +0.4
314,936 - CCNA_00301 0.30 +0.7
314,938 + CCNA_00301 0.30 -2.9
314,938 + CCNA_00301 0.30 -2.0
314,938 + CCNA_00301 0.30 -2.6
314,946 - CCNA_00301 0.31 -0.1
314,946 - CCNA_00301 0.31 +0.1
314,946 - CCNA_00301 0.31 -1.5
314,975 + CCNA_00301 0.33 +0.2
314,975 - CCNA_00301 0.33 -1.9
315,002 + CCNA_00301 0.36 -2.5
315,032 - CCNA_00301 0.39 +1.4
315,059 + CCNA_00301 0.41 -1.5
315,067 - CCNA_00301 0.42 -0.4
315,080 - CCNA_00301 0.43 -1.8
315,088 - CCNA_00301 0.44 -1.0
315,088 - CCNA_00301 0.44 +2.4
315,093 - CCNA_00301 0.44 +0.9
315,165 + CCNA_00301 0.51 -0.6
315,175 + CCNA_00301 0.52 +0.7
315,175 + CCNA_00301 0.52 +0.1
315,183 - CCNA_00301 0.52 +0.7
315,183 - CCNA_00301 0.52 -0.6
315,183 - CCNA_00301 0.52 +1.4
315,183 - CCNA_00301 0.52 -0.3
315,183 - CCNA_00301 0.52 +0.1
315,183 - CCNA_00301 0.52 -2.4
315,183 - CCNA_00301 0.52 -1.6
315,183 - CCNA_00301 0.52 -0.4
315,183 - CCNA_00301 0.52 -0.4
315,183 - CCNA_00301 0.52 -2.2
315,206 - CCNA_00301 0.55 -2.6
315,259 + CCNA_00301 0.59 -1.9
315,259 + CCNA_00301 0.59 +1.4
315,294 + CCNA_00301 0.63 -0.3
315,316 + CCNA_00301 0.65 -0.9
315,332 + CCNA_00301 0.66 +0.2
315,332 + CCNA_00301 0.66 -0.6
315,346 + CCNA_00301 0.67 +0.1
315,353 + CCNA_00301 0.68 -1.2
315,353 + CCNA_00301 0.68 -3.6
315,361 - CCNA_00301 0.69 +0.1
315,399 + -0.6
315,408 + CCNA_00301 0.73 -1.3
315,416 - CCNA_00301 0.74 +2.4
315,416 - CCNA_00301 0.74 -0.1
315,418 + CCNA_00301 0.74 -0.3
315,430 + CCNA_00301 0.75 -0.5
315,520 + CCNA_00301 0.84 +1.1
315,543 + CCNA_00301 0.86 -0.0
315,550 + CCNA_00301 0.86 -0.4
315,577 + CCNA_00301 0.89 +0.6
315,636 - -1.6
315,650 + -0.4
315,655 + +2.4
315,655 + +0.8
315,658 - -0.6
315,673 - -1.7
315,673 - -0.6
315,684 + +0.9
315,692 - -1.2
315,738 + -1.9
315,746 - -0.2
315,746 - -1.6
315,772 - -1.9
315,784 - +0.8
315,843 + CCNA_00302 0.11 +0.9
315,843 + CCNA_00302 0.11 -2.6
315,892 - CCNA_00302 0.15 -1.4
315,931 + CCNA_00302 0.18 +1.0
315,931 + CCNA_00302 0.18 +1.0
315,931 + CCNA_00302 0.18 -3.9
315,983 - CCNA_00302 0.22 -1.0
316,028 - CCNA_00302 0.25 -1.1
316,028 - CCNA_00302 0.25 -2.0
316,028 - CCNA_00302 0.25 +0.4
316,040 - CCNA_00302 0.26 +0.3
316,068 - CCNA_00302 0.28 +2.4
316,133 - CCNA_00302 0.33 -1.3
316,167 - CCNA_00302 0.36 -1.1
316,275 - CCNA_00302 0.44 -0.4
316,336 - CCNA_00302 0.49 +0.5
316,336 - CCNA_00302 0.49 -0.9
316,353 + CCNA_00302 0.50 -0.5
316,358 + CCNA_00302 0.51 -0.1
316,358 + CCNA_00302 0.51 -0.4
316,366 - CCNA_00302 0.51 +2.4
316,366 - CCNA_00302 0.51 +0.4
316,438 + CCNA_00302 0.57 -1.5
316,438 + CCNA_00302 0.57 -1.1
316,440 - CCNA_00302 0.57 -0.9
316,447 - CCNA_00302 0.58 -0.4
316,532 - CCNA_00302 0.64 -2.3
316,553 - CCNA_00302 0.66 +2.4
316,559 + CCNA_00302 0.66 -0.1
316,567 - CCNA_00302 0.67 -1.1
316,567 - CCNA_00302 0.67 -2.9
316,567 - CCNA_00302 0.67 -2.0
316,659 - CCNA_00302 0.74 +1.5
316,680 - CCNA_00302 0.76 -2.3
316,695 - CCNA_00302 0.77 -2.1
316,721 + CCNA_00302 0.79 -0.4
316,777 + CCNA_00302 0.83 -0.4
316,808 + CCNA_00302 0.86 -2.2
316,832 + CCNA_00302 0.88 +0.3
316,861 + CCNA_00302 0.90 -0.3
316,894 + +1.4
316,931 - +0.7
316,931 - -2.5
316,988 - +0.3
317,009 + -1.7
317,018 + -0.6

Or see this region's nucleotide sequence