Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00284

Experiment: PYE 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00282 and CCNA_00283 are separated by 117 nucleotidesCCNA_00283 and CCNA_00284 overlap by 4 nucleotidesCCNA_00284 and CCNA_00285 overlap by 4 nucleotides CCNA_00282: CCNA_00282 - conserved cell surface protein, at 294,659 to 294,991 _00282 CCNA_00283: CCNA_00283 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 295,109 to 295,969 _00283 CCNA_00284: CCNA_00284 - pyrimidine 5'-nucleotidase family protein, at 295,966 to 296,631 _00284 CCNA_00285: CCNA_00285 - acetylglutamate kinase, at 296,628 to 297,542 _00285 Position (kb) 295 296 297Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 294.994 kb on - strandat 294.995 kb on - strandat 295.041 kb on - strandat 295.050 kb on - strandat 295.078 kb on + strandat 295.107 kb on + strandat 295.962 kb on - strandat 296.044 kb on + strand, within CCNA_00284at 296.053 kb on - strand, within CCNA_00284at 296.068 kb on + strand, within CCNA_00284at 296.068 kb on + strand, within CCNA_00284at 296.068 kb on + strand, within CCNA_00284at 296.073 kb on + strand, within CCNA_00284at 296.073 kb on + strand, within CCNA_00284at 296.073 kb on + strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.080 kb on + strand, within CCNA_00284at 296.081 kb on - strand, within CCNA_00284at 296.081 kb on - strand, within CCNA_00284at 296.088 kb on - strand, within CCNA_00284at 296.153 kb on + strand, within CCNA_00284at 296.156 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.269 kb on + strand, within CCNA_00284at 296.346 kb on + strand, within CCNA_00284at 296.352 kb on + strand, within CCNA_00284at 296.352 kb on + strand, within CCNA_00284at 296.360 kb on - strand, within CCNA_00284at 296.360 kb on - strand, within CCNA_00284at 296.366 kb on - strand, within CCNA_00284at 296.366 kb on - strand, within CCNA_00284at 296.437 kb on + strand, within CCNA_00284at 296.445 kb on - strand, within CCNA_00284at 296.447 kb on + strand, within CCNA_00284at 296.449 kb on + strand, within CCNA_00284at 296.449 kb on + strand, within CCNA_00284at 296.450 kb on - strand, within CCNA_00284at 296.450 kb on - strand, within CCNA_00284at 296.455 kb on - strand, within CCNA_00284at 296.455 kb on - strand, within CCNA_00284at 296.619 kb on + strandat 296.620 kb on - strandat 296.620 kb on - strandat 297.617 kb on + strandat 297.619 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 28 days
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294,994 - +0.3
294,995 - -1.5
295,041 - -1.4
295,050 - +2.4
295,078 + -1.5
295,107 + -2.7
295,962 - +0.3
296,044 + CCNA_00284 0.12 +0.4
296,053 - CCNA_00284 0.13 +2.4
296,068 + CCNA_00284 0.15 +1.2
296,068 + CCNA_00284 0.15 +0.1
296,068 + CCNA_00284 0.15 -1.0
296,073 + CCNA_00284 0.16 +0.4
296,073 + CCNA_00284 0.16 -0.6
296,073 + CCNA_00284 0.16 +1.9
296,076 - CCNA_00284 0.17 -1.6
296,076 - CCNA_00284 0.17 -0.1
296,076 - CCNA_00284 0.17 +1.2
296,076 - CCNA_00284 0.17 +0.1
296,076 - CCNA_00284 0.17 +1.4
296,076 - CCNA_00284 0.17 -0.1
296,080 + CCNA_00284 0.17 +2.4
296,081 - CCNA_00284 0.17 +0.4
296,081 - CCNA_00284 0.17 +2.5
296,088 - CCNA_00284 0.18 +3.2
296,153 + CCNA_00284 0.28 +0.4
296,156 - CCNA_00284 0.29 +3.1
296,183 - CCNA_00284 0.33 -0.6
296,183 - CCNA_00284 0.33 +3.0
296,183 - CCNA_00284 0.33 -1.8
296,183 - CCNA_00284 0.33 +2.8
296,269 + CCNA_00284 0.45 +0.2
296,346 + CCNA_00284 0.57 +0.0
296,352 + CCNA_00284 0.58 -4.4
296,352 + CCNA_00284 0.58 +0.4
296,360 - CCNA_00284 0.59 +1.7
296,360 - CCNA_00284 0.59 +2.2
296,366 - CCNA_00284 0.60 +2.4
296,366 - CCNA_00284 0.60 +1.8
296,437 + CCNA_00284 0.71 +2.0
296,445 - CCNA_00284 0.72 +1.4
296,447 + CCNA_00284 0.72 +2.3
296,449 + CCNA_00284 0.73 +2.1
296,449 + CCNA_00284 0.73 +0.1
296,450 - CCNA_00284 0.73 +2.9
296,450 - CCNA_00284 0.73 +2.4
296,455 - CCNA_00284 0.73 +2.4
296,455 - CCNA_00284 0.73 +3.2
296,619 + +2.2
296,620 - +1.3
296,620 - +1.3
297,617 + +1.4
297,619 + +0.3

Or see this region's nucleotide sequence