Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2912

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2911 and DvMF_2912 are separated by 118 nucleotidesDvMF_2912 and DvMF_2913 are separated by 300 nucleotides DvMF_2911: DvMF_2911 - flagellar protein FliS (RefSeq), at 3,679,750 to 3,680,577 _2911 DvMF_2912: DvMF_2912 - flagellar hook-associated 2 domain protein (RefSeq), at 3,680,696 to 3,682,429 _2912 DvMF_2913: DvMF_2913 - peptidase M22 glycoprotease (RefSeq), at 3,682,730 to 3,683,878 _2913 Position (kb) 3680 3681 3682 3683Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3679.978 kb on - strand, within DvMF_2911at 3680.000 kb on - strand, within DvMF_2911at 3680.113 kb on - strand, within DvMF_2911at 3680.750 kb on - strandat 3680.764 kb on + strandat 3680.772 kb on - strandat 3681.162 kb on + strand, within DvMF_2912at 3681.162 kb on + strand, within DvMF_2912at 3681.323 kb on - strand, within DvMF_2912at 3681.402 kb on - strand, within DvMF_2912at 3681.476 kb on + strand, within DvMF_2912at 3681.783 kb on + strand, within DvMF_2912at 3681.882 kb on - strand, within DvMF_2912at 3681.896 kb on + strand, within DvMF_2912at 3682.006 kb on - strand, within DvMF_2912at 3682.103 kb on + strand, within DvMF_2912at 3682.156 kb on - strand, within DvMF_2912

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,679,978 - DvMF_2911 0.28 -0.2
3,680,000 - DvMF_2911 0.30 -0.1
3,680,113 - DvMF_2911 0.44 -1.7
3,680,750 - -0.1
3,680,764 + -4.5
3,680,772 - -1.5
3,681,162 + DvMF_2912 0.27 -2.4
3,681,162 + DvMF_2912 0.27 -2.7
3,681,323 - DvMF_2912 0.36 -2.5
3,681,402 - DvMF_2912 0.41 -1.2
3,681,476 + DvMF_2912 0.45 -5.7
3,681,783 + DvMF_2912 0.63 -1.2
3,681,882 - DvMF_2912 0.68 -2.5
3,681,896 + DvMF_2912 0.69 -1.5
3,682,006 - DvMF_2912 0.76 -4.3
3,682,103 + DvMF_2912 0.81 -1.6
3,682,156 - DvMF_2912 0.84 -3.1

Or see this region's nucleotide sequence