Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2907

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2906 and DvMF_2907 are separated by 347 nucleotidesDvMF_2907 and DvMF_2908 are separated by 169 nucleotides DvMF_2906: DvMF_2906 - hypothetical protein (RefSeq), at 3,673,437 to 3,674,207 _2906 DvMF_2907: DvMF_2907 - hypothetical protein (RefSeq), at 3,674,555 to 3,674,890 _2907 DvMF_2908: DvMF_2908 - MJ0042 family finger-like protein (RefSeq), at 3,675,060 to 3,676,760 _2908 Position (kb) 3674 3675Strain fitness (log2 ratio) -2 -1 0 1at 3673.792 kb on - strand, within DvMF_2906at 3674.044 kb on + strand, within DvMF_2906at 3674.112 kb on + strand, within DvMF_2906at 3674.139 kb on - strandat 3674.577 kb on - strandat 3674.580 kb on + strandat 3674.954 kb on - strandat 3675.013 kb on + strandat 3675.200 kb on - strandat 3675.268 kb on - strand, within DvMF_2908at 3675.339 kb on + strand, within DvMF_2908at 3675.346 kb on - strand, within DvMF_2908at 3675.383 kb on - strand, within DvMF_2908at 3675.395 kb on + strand, within DvMF_2908at 3675.622 kb on + strand, within DvMF_2908at 3675.627 kb on + strand, within DvMF_2908at 3675.825 kb on - strand, within DvMF_2908at 3675.842 kb on + strand, within DvMF_2908at 3675.850 kb on - strand, within DvMF_2908

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,673,792 - DvMF_2906 0.46 -0.8
3,674,044 + DvMF_2906 0.79 -1.0
3,674,112 + DvMF_2906 0.88 -1.9
3,674,139 - -1.6
3,674,577 - -0.7
3,674,580 + -0.9
3,674,954 - -1.4
3,675,013 + -0.5
3,675,200 - +0.4
3,675,268 - DvMF_2908 0.12 -0.3
3,675,339 + DvMF_2908 0.16 -0.0
3,675,346 - DvMF_2908 0.17 -0.2
3,675,383 - DvMF_2908 0.19 -0.2
3,675,395 + DvMF_2908 0.20 -0.1
3,675,622 + DvMF_2908 0.33 -1.0
3,675,627 + DvMF_2908 0.33 -0.3
3,675,825 - DvMF_2908 0.45 -0.1
3,675,842 + DvMF_2908 0.46 +0.0
3,675,850 - DvMF_2908 0.46 -1.4

Or see this region's nucleotide sequence